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  • A Tidy Transcriptomics introduction to RNA-Seq analyses

    27 July 2020

    A Tidy Transcriptomics introduction to RNA-Seq analyses https://tess.elixir-europe.org/events/a-tidy-transcriptomics-introduction-to-rna-seq-analyses This workshop will present how to perform analysis of RNA sequencing data following the tidy data paradigm. The tidy data paradigm provides a standard way to organise data values within a dataset, where each variable is a column, each observation is a row, and data is manipulated using an easy-to-understand vocabulary. Most importantly, the data structure remains consistent across manipulation and analysis functions. This can be achieved for RNA sequencing data with the [tidybulk](github.com/stemangiola/tidybulk), [tidyHeatmap](github.com/stemangiola/tidyHeatmap) and tidyverse packages. The package [tidybulk](github.com/stemangiola/tidybulk) provides a tidy data structure and a modular framework for bulk transcriptional analyses. tidyHeatmap provides a tidy implementation of ComplexHeatmap. These packages are part of the tidytranscriptomics suite that introduces a tidy approach to RNA sequencing data. The topics presented in this workshop will be - Data exploration - Data dimensionality reduction and clustering - Differential gene expression analysis - Data visualisation ## Pre-requisites * Basic knowledge of RStudio * Familiarity with tidyverse syntax Recommended Background Reading [Introduction to R for Biologists](https://melbournebioinformatics.github.io/r-intro-biologists/intro_r_biologists.html) 2020-07-27 17:00:00 UTC 2020-07-27 17:55:00 UTC Bioc2020 RNA-Seq [] [] Beginners workshops_and_courses [] RNA-seqTranscriptomicsDifferential ExpressionGene Expression R-programmingBioconductortidyverse
  • Metagenomics Analysis using Galaxy

    11 August 2020

    Metagenomics Analysis using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-bfd44b56-d4a3-4863-a62b-e7656374a9a9 This workshop will cover the concepts of 16S bacterial metagenomics analysis. You will learn about pre-processing and quality -filtering of your data, assembly of reads into Operational Taxonomic Units (OTUs), and visualisation and export of data for further analysis. 2020-08-11 09:00:00 UTC 2020-08-11 17:00:00 UTC QCIF Online workshop delivered via Zoom, N/A, Australia Online workshop delivered via Zoom N/A Queensland Australia N/A QCIF Mark Crowe - mark.crowe@qcif.edu.au [] Postgraduate studentsPostdoctoral researchers workshops_and_courses first_come_first_served MetagenomicsGalaxyBioinformatics

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