Bacterial Genomes: Disease Outbreaks and Antimicrobial Resistance
31 August 2020 - 3 January 2021Bacterial Genomes: Disease Outbreaks and Antimicrobial Resistance https://coursesandconferences.wellcomegenomecampus.org/our-events/bacterial-genomes-disease-outbreaks-amr-online-mar20-copy/ https://tess.elixir-europe.org/events/bacterial-genomes-disease-outbreaks-and-antimicrobial-resistance-2aa0df3a-e74c-4f5c-acc3-8c2ee0847f71 # Overview * **Duration**: 3 weeks, 3 hours per week * Free * Certificate of achievement available on satisfactory completion * **CPD Approval**: Royal College of Pathologists (9 credits), Royal College of Nursing (9 credits) * **Start Date**: The course is run ‘live’ for 3 weeks from the start date above. Once this period is over there will be no live monitoring of the forums, but you can still join and complete the course during the remaining period. ### Why join the course? The increase in resistance of harmful bacteria to antibiotics is a major global threat to health. Here we explore bacterial genomes and the use of genome sequencing to identify and track these drug resistant bacteria. Join us to discover how genome research is helping scientists and healthcare professionals track disease outbreaks and prevent the rise of antibiotic resistant ‘superbugs’. ### Who is the course for? This course will be of interest to scientists, healthcare professionals, biomedical researchers and bioinformaticians. The course offers all learners an opportunity to learn about genomes, disease, and antimicrobial resistance. You require no previous knowledge of genome science to complete the course. ### What do people say about this course? "_I would definitely point students to this resource. Text, videos, and figures were all very well done._" Pablo Tsukayama, Assistant Professor of Microbiology "_A highlight of the course was the introduction to whole genome sequencing – new information for me._" Christine Laws, Medical Doctor “_Exchanging genetic information quickly throughout the world is clearly going to revolutionise the ability to combat disease._” Prue van der Hoorn, Artist # Programme and start dates ### Course start dates This course is repeated twice a year. ### What topics will you cover? * Diseases caused by bacteria * What bacterial genomes look like * Genome sequencing technology * Mechanisms of transmission and resistance * Genomic epidemiology – tracking the spread of bacterial pathogens * Antimicrobial resistance ### What will you achieve? By the end of the course, you'll be able to... * Explain why some bacteria are pathogenic * Explore the structure of bacterial genomes * Describe the uses of different genome sequencing technologies * Investigate how genome data are used to track the spread of bacterial disease * Discuss the role of genome sequencing in stopping the spread of antimicrobial resistance # Educators ## **Lead Educators** **[Dr Adam Reid]** I am a senior staff scientist at the Wellcome Sanger Institute near Cambridge in the United Kingdom. I'm interested in using genomics and bioinformatics to better understand infectious diseases. **[Dr Josie Bryant]** I am a Henry Wellcome Postdoctoral Fellow in the University of Cambridge, Department of Medicine. I am working on bacterial genomics and evolution with a focus on within-patient microbial diversity ### Dr Francesca Short I am a scientist at the Wellcome Sanger Institute. I am interested in using functional genomics techniques to understand infections caused by the bacterium _Klebsiella pneumoniae_. ## **Programme Lead Educator** **[Professor Nicholas Thomson]** I am a Group Leader at the Wellcome Sanger Institute. I provide scientific oversight for this course. I am interested in bacterial evolution and the spread of infectious disease. ### The course also features interviews with distinguished scientists, including: * **[Mathew Beale]** - Wellcome Sanger Institute * **[Daryl Domman]** - Wellcome Sanger Institute * **[Gal Horesh]** - Wellcome Sanger Institute * **[Catherine Ludden]** - London School of Hygiene and Tropical Medicine * **[Tapoka Mkandawire]** - Wellcome Sanger Institute * **[Julian Parkhill]** - Wellcome Sanger Institute * **Lindsay Pike** - Wellcome Sanger Institute * **[Michael Quail]** - Wellcome Sanger Institute * **[Susannah J. Salter]** - Wellcome Sanger Institute * **[Estee Torok]** - Addenbrooke’s Hospital and University of Cambridge : http://www.sanger.ac.uk/people/directory/reid-adam-james : https://www.infectiousdisease.cam.ac.uk/directory/josie-bryant : http://www.sanger.ac.uk/people/directory/thomson-nicholas-robert : http://www.sanger.ac.uk/people/directory/beale-mathew : http://www.sanger.ac.uk/people/directory/domman-daryl : http://www.sanger.ac.uk/people/directory/horesh-gal : https://www.lshtm.ac.uk/aboutus/people/ludden.catherine : http://www.sanger.ac.uk/people/directory/mkandawire-tapoka-t : http://www.sanger.ac.uk/people/directory/parkhill-julian : http://www.sanger.ac.uk/people/directory/quail-michael-andrew : http://www.sanger.ac.uk/people/directory/salter-susannah-j : https://email@example.com # What's Included Wellcome Genome Campus Advanced Courses and Scientific Conferences are offering everyone who joins this course a free digital upgrade, so that you can experience the full benefits of studying online for free. This means that you get: * Unlimited access to this course * Includes any articles, videos, peer reviews and quizzes * Tests to validate your learning * A PDF Certificate of Achievement to prove your success when you’re eligible # CDP Approval 2020-08-31 09:00:00 UTC 2021-01-03 23:59:59 UTC Wellcome Genome Campus - Advanced Courses  firstname.lastname@example.org   workshops_and_courses  bacterialgenomesAMRHDRUK
Bacterial Genomes: From DNA to Protein Function Using Bioinformatics
12 October 2020 - 7 February 2021Bacterial Genomes: From DNA to Protein Function Using Bioinformatics https://coursesandconferences.wellcomegenomecampus.org/our-events/bacterial-genomes-dna-protein-function-bioinformatics-online-oct20/ https://tess.elixir-europe.org/events/bacterial-genomes-from-dna-to-protein-function-using-bioinformatics-e18aa62a-65f6-478d-ad25-61b757305166 # Overview * **Duration**: 2 weeks, 5 hours per week * Free * Certificate of Achievement available on satisfactory completion * **CPD Approval**: Royal College of Pathologists (10 credits) * **Start Date**: The course is run ‘live’ for 2 weeks from the start date above. Once this period is over there will be no live monitoring of the forums, but you can still join and complete the course during the remaining period. ### Why join the course? Join us in our quest to discover what makes microbes dangerous. Use bioinformatics to probe genomes, to explore and represent DNA and protein sequences. Then, use databases to find protein sequences’ conserved domains and investigate their functions. ### Who is the course for? The course will be of interest to undergraduates, post-graduates, researchers, bioinformaticians, biomedical researchers, microbiologists, healthcare professionals and all those who are interested in learning about the underlying mechanisms of bacterial disease, DNA sequences and protein data, or how to use online analytical tools to probe genomes. The topics covered in this course are applicable to the genomes of all organisms. It is not essential to have previous knowledge or experience in bioinformatics. Scientific terminology is explained. The opportunity to use online computational tools in the context of bacterial genomes will also be of interest to teachers and their 16-18-year-old science and computing students. ### What do people say about this course? "_Clear introduction of the – often viewed as complex – field of bioinformatics_." Mqondisi Tshabalala, PhD student, Institute for Cellular and Molecular Medicine, University of Pretoria, South Africa "_Highlights of the course were the investigations with the databases - these reinforced the learning._" Dr. Alan McLintic, Anaesthesiologist, Faculty of Medicine and Health Scientists, University of Auckland, New Zealand # Programme and start dates ### Course start dates This course will be repeated twice a year. ### What topics will you cover? * Bioinformatics tools, DNA and protein sequences * Retrieving DNA and protein sequences from repositories * Databases for protein annotation * Inferring function from sequence ### What will you achieve? By the end of the course, you'll be able to... * assess DNA representations and protein sequences * perform searches in primary databases (repositories) and retrieve gene/protein data * interpret different repository submission formats * investigate biological databases for research * identify the putative function of proteins based on their conserved domains # Educators ## **Lead Educators** ### Dr Anna Protasio I am a researcher in parasitology and life sciences. I am passionate about bioinformatics and how we can use these tools to answer questions in biology. ### Martin Aslett I am the IT Manager for the Wellcome Genome Campus Advanced Courses and Scientific Conferences team. My interests lie in bioinformatics and its application to microbial genomics. ### Dr Christine Boinett I am a researcher in bacterial genetics and my interest is in understanding the development of resistance in bacterial pathogens using next generation sequencing techniques. ## **Educator** ### Matthew Dorman I am a graduate student at the Wellcome Sanger Institute, where I research the virulence and the molecular genetics of bacterial pathogens as part of the Infection Genomics programme. ## **Programme Lead Educator** ### Professor Nicholas Thomson Group Leader at the Wellcome Sanger Institute, interested in bacterial evolution and the spread of infectious disease; provides scientific oversight for this course. The course also features interviews with two distinguished experts: ### Dr Rob Finn Team Leader of EMBL-EBI Sequence Families Team ### Dr Claire Chewapreecha Sir Henry Wellcome Fellow and Lecturer, University of Cambridge, UK, and King Mongkut University of Technology, Thailand. # What's Included Wellcome Genome Campus Advanced Courses and Scientific Conferences are offering everyone who joins this course a free digital upgrade, so that you can experience the full benefits of studying online for free. This means that you get: * Unlimited access to this course * Includes any articles, videos, peer reviews and quizzes * Tests to validate your learning * A PDF Certificate of Achievement to prove your success when you’re eligible # CPD Approval 2020-10-12 09:00:00 UTC 2021-02-07 23:59:59 UTC Wellcome Genome Campus - Advanced Courses  email@example.com   workshops_and_courses  bacterialgenomesinformaticsHDRUK
Introduction to Galaxy online workshop
7 December 2020
Prague, CzechiaIntroduction to Galaxy online workshop https://www.elixir-czech.cz/events/introduction-to-galaxy-online-workshop-dec-2020 https://tess.elixir-europe.org/events/introduction-to-galaxy-online-workshop The workshop is online, please register to obtain connection details. 2020-12-07 13:00:00 UTC 2020-12-07 16:00:00 UTC Institute of Organic Chemistry and Biochemistry (IOCB) Flemingovo nám. 542, 542, Flemingovo náměstí, Prague, Czechia Flemingovo nám. 542, 542, Flemingovo náměstí Prague Hlavní město Praha Czechia    workshops_and_courses first_come_first_served GalaxyChemistry
Galaxy Admin Training
25 - 29 January 2021Galaxy Admin Training https://galaxyproject.org/events/2021-01-admin-training/ https://tess.elixir-europe.org/events/galaxy-admin-training-e8fe46a1-a150-4a0d-a33f-e7e8b2653258 Galaxy is an open web based platform for biomedical data integration and analysis. It is deployed at large and small organizations around the world and used in a broad range of biomedical research domains, and across the tree of life. This [workshop](https://gxy.io/gat) will cover introductory and advanced topics you need to know to set up your own production, high-performance and multi-user Galaxy instance. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. Participants will learn how to install, configure, customize, and extend their own Galaxy servers. Topics include tool configuration, authentication and user management, using heterogeneous storage and compute services, and many other topics that will enable you to get your own Galaxy server up and running, performing well, and used by your community. 2021-01-25 09:00:00 UTC 2021-01-29 23:00:00 UTC Galaxy Training Network   Linux system administrators workshops_and_courses first_come_first_served GalaxytrainingSystem Administration
15 - 19 February 2021GTN Smörgåsbord https://galaxyproject.org/events/2021-02-smorgasbord/ https://tess.elixir-europe.org/events/gtn-smorgasbord In February 2021, we will organize a global 5-day Galaxy Training event showcasing a wide variety of GTN (Galaxy Training Network) tutorials. This will be an online event, spanning all time zones. All training sessions are pre-recorded, so you can work through them at your own pace, and manage your own time. A large community of GTN trainers will be available via online support to answer all your questions. The program covers a general introduction to the Galaxy platform, NGS Analysis (DNA-seq and RNA-seq), Proteomics, and also features a Choose your own adventure day on Friday, where we encourage you to explore all the tutorials that the GTN training repository has to offer, and follow those that are of interest to you. The GTN tutorials cover a wide range of scientific topics, from NGS to ecology, climate science, machine learning, visualization, and many more. All the tutorials can be found on the GTN website 2021-02-15 09:00:00 UTC 2021-02-19 17:00:00 UTC Galaxy Training Network Zoom, Global Zoom Global   beginner bioinformaticiansintermediate bioinformaticians workshops_and_courses first_come_first_served GalaxyTraining
Note, this map only displays events that have geolocation information in TeSS.
For the complete list of events in TeSS, click the grid tab.