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  • Nextflow 2019

    17 - 20 September 2019

    Barcelona, Spain

    Elixir node event
    Nextflow 2019 https://tess.elixir-europe.org/events/nextflow-2019 **Create. Deploy. Share.** Nextflow is a popular workflow management solution that allows scientists and engineers to create data-driven applications which can be effortlessly scaled across clusters and clouds. It simplifies the writing of complex distributed computational workflows in a portable and replicable manner. Nextflow allows the seamless parallelization and deployment of any existing application with minimal development and maintenance overhead, irrespective of the original programming language. Containerisation technologies and inbuilt executors for the most popular cluster systems (SLURM, PBS, UGE, LSF, etc) and cloud infrastructure (AWS Batch & Google Cloud Platform) ensures unrivalled deployment. The built-in support for code repositories provides code sharing for the collaborations that matter most and enable your applications to touch the world. But most of all, the active community of that has formed around Nextflow provides inspirational, best-in-class technical examples from global leaders in workflow deployment as well as lasting relationships in a growing community. __Nextflow Training - 17th and 18th September 2019__ The week kicks off with a two-day intensive workshop intended for Nextflow beginners and intermediate users. In these practical sessions, participants learn about Nextflow technology starting from basic through to advanced concepts, with the expectation they will acquire the proficiency to develop and deploy their own workflows. The workshop will be provided across 14 topics including processes, operators, executors, containers and best practices. A GitHub repository will be provided with all the necessary material and software as well as AWS cloud instances for running the deployments in the relevant practical sessions. The audience is expected to have at least some prior basic command line experience. __Nextflow Camp - 19th and 20th September 2019__ Nextflow Camp brings together the Nextflow community of developers and users to discuss the state of Nextflow technology, the latest developments and tackle the open questions in a collaborative manner. Each day is split between talks from Nextflow experts and tutorial breakout sessions where participants get a flavour for the possibilities for their own applications. We hope to see you in Barcelona in September! 2019-09-17 09:00:00 UTC 2019-09-20 18:00:00 UTC Paolo Di Tommaso PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader, Barcelona, Spain PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader Barcelona Barcelona Spain 08003 Centre for Genomic Regulation training@crg.eu AWS Bioinformaticians 50 meetings_and_conferencesworkshops_and_courses first_come_first_served NextflowWorkflowsContainersCloud ComputingHPC
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide)

    25 - 26 September 2019

    Adelaide, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow 2019-09-25 09:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000, Adelaide, Australia Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000 Adelaide Adelaide City Council Australia Bioinformatics University of Adelaide [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre)

    25 - 26 September 2019

    Perth, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-3e39d24f-3f89-496f-8d54-479324a373b9 2019-09-25 10:00:00 UTC 2019-09-26 14:00:00 UTC EMBL-ABR Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151, Perth, Australia Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151 Perth Australia Bioinformatics Australian Resources Research Centre [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-monash-university 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC, Melbourne, Australia L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC Melbourne Australia Bioinformatics Monash University [] [] [] [] SnakemakeNextflowbioinformatics
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-c253f254-38a1-4de9-b3cf-8abf216453db 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168, Melbourne, Australia Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168 Melbourne Australia Bioinformatics [] [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU)

    25 - 26 September 2019

    Townsville, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-b20f419e-63fe-4ad1-a65c-4afe6f988d4c 2019-09-25 12:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 002-107 James Cook University Townsville, QLD, Townsville, Australia Room 002-107 James Cook University Townsville, QLD Townsville Townsville City Australia Bioinformatics James Cook University [] [] [] [] bioinformaticsSnakemakeNextflow
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UNSW)

    25 - 26 September 2019

    New South Wales , Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UNSW) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-77dd69fe-1580-410f-86bc-adba3f78eabf 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Squarehouse 217 Kensington Campus (Lower campus near Anzac Parade) UNSW NSW, New South Wales , Australia Squarehouse 217 Kensington Campus (Lower campus near Anzac Parade) UNSW NSW New South Wales Randwick City Council Australia Bioinformatics The University of Sydney [] [] [] [] BioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ)

    25 - 26 September 2019

    Saint Lucia, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-826ee571-b240-4f58-afb8-fd46491db6b1 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Room 505 Axon Building (#47) University of Queensland St Lucia, QLD, Saint Lucia, Australia Room 505 Axon Building (#47) University of Queensland St Lucia, QLD Saint Lucia Australia Bioinformatics University of Queensland [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-23941db7-c610-4aaf-8789-f55c938edb0d 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053, Melbourne, Australia Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053 Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsSnakemakeNextflow
  • 4th de.NBI Training Course on Metagenome Analysis

    9 - 11 October 2019

    Bielefeld, Germany

    4th de.NBI Training Course on Metagenome Analysis https://tess.elixir-europe.org/events/4th-de-nbi-training-course-on-metagenome-analysis Educators: Sebastian Jünemann (Bielefeld University), Dr. Alex Sczyrba (Bielefeld University), Sebastian Jaenicke (Giessen University), Nils Kleinboelting (Bielefeld University) Location: Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Room V6-113 Date: October the 9th to 11th, 2019 Content: The aim of this 3-day workshop will be to give students a brief overview of the tools and bioinformatics techniques available for the analysis of next generation sequence (NGS) data from microbial communities. The format will comprise a mixture of lectures and hands-on tutorials where students will process example data sets in real-time in the de.NBI cloud environment. After covering general aspects of sequence based analysis (e.g. pre-processing, quality measurements, error handling, and so on) the course is divided into two parts: targeted (16S rRNA gene amplicons) and untargeted (whole-genome shotgun; WGS) metagenome analysis. On demand, a compact introduction into the Linux operating system and the usage of the command line interface will be given upstream to the introducing part to guarantee a consistent baseline for the following lectures. The main aspects of the 16S part are the common pipeline steps beginning with pre-processing and filtering followed by OTU clustering, taxonomic classification, and different statistical measurements. Then, the new ASV/zOTU approach will be introduced followed by similar statistics and both approaches discussed with the attendants in conclusion. In the third part, advantages and disadvantages of whole metagenome sequencing will be illustrated. As WGS metagenomics has the potential to address the full spectra of genome-based issues, the focus here will be on taxonomic and functional analysis with the aid of different bioinformatic tools. Two different techniques to analyze WGS metagenome data are part of this section: (1) in the read-based approach the software solution MGX, an integrated platform for metagenome analysis and data visualization, will be demonstrated. (2) the assembly-based approach to potentially recover near-complete genome by assembling reads into contigs which are subject to binning methods to group individual contigs into genome bins. Prerequisites: - basic knowledge in microbiology and NGS-based analysis - practical experience in a Linux/Unix derivatives, the command line interface and file system required Prerequisites for the workshop plus the optional Linux introduction: - basic knowledge in microbiology and NGS-based analysis Please not that participation to this course does not depend on the actual Linux experience of the applicant. Both, experienced as well as inexperienced Linux users are encouraged to submit an application. However, the Linux introducing session in the morning of the first day is optional only for applicants fulfilling the Linux prerequisite. Application: Please send your application to denbi-courses@cebitec.uni-bielefeld.de (subject MG­course2019) including a short motivation, a few words about your background, your level of experience on the command line (Linux/Unix), and your experience within the field of metagenomic analysis and related bioinformatic tools. There will be no participation fee, yet travel and accommodation expenses need to be paid by the participants. 2019-10-09 09:00:00 UTC 2019-10-11 17:00:00 UTC de.NBI Bielefeld, Bielefeld, Germany Bielefeld Bielefeld Detmold Germany [] [] [] workshops_and_courses [] metagenomics
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
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