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  • Snakemake workshop

    6 - 7 January 2020

    Cambridge, United Kingdom

    Elixir node event
    Snakemake workshop https://tess.elixir-europe.org/events/snakemake-workshop Data analyses usually entail the application of many command line tools or scripts to transform, filter, aggregate or plot data and results. With ever increasing amounts of data being collected in science, reproducible and scalable automatic workflow management becomes increasingly important. The [Snakemake](https://snakemake.readthedocs.io/en/stable/) workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. With over 100k downloads on Bioconda, Snakemake is a widely used and accepted standard for reproducible data science that has powered numerous high impact publications. This 2-day workshop with, at the first day, teach how to use Snakemake for reproducible data analysis. On the second day, we will further discuss advanced topics and everybody is welcome to apply the obtained knowledge for his or her own analysis project while getting help from the organizers. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3108957&course-title=Snakemake%20workshop).'' 2020-01-06 09:30:00 UTC 2020-01-07 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to RNA-Seq and Functional Interpretation

    20 - 23 January 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to RNA-Seq and Functional Interpretation https://tess.elixir-europe.org/events/introduction-to-rna-seq-and-functional-interpretation-e2471a7b-692d-419f-8746-a251893793f3 This course is aimed at life science researchers wanting to learn more about processing RNA-Seq data and later downstream analysis. 2020-01-20 09:00:00 UTC 2020-01-23 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Ensembl Browser Workshop- American University in Cairo, 21st January 2020

    21 January 2020

    Cairo, Egypt

    Elixir node event
    Ensembl Browser Workshop- American University in Cairo, 21st January 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-american-university-in-cairo-21st-january-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-01-21 09:00:00 UTC 2020-01-21 09:00:00 UTC American University in Cairo, Cairo, Egypt American University in Cairo Cairo Egypt 11835 [] Benjamin Moore [] [] [] [] HDRUK
  • Ensembl REST API workshop, American University in Cairo, 22nd January 2020

    22 January 2020

    Cairo, Egypt

    Elixir node event
    Ensembl REST API workshop, American University in Cairo, 22nd January 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-american-university-in-cairo-22nd-january-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-01-22 09:30:00 UTC 2020-01-22 09:30:00 UTC American University in Cairo, Cairo, Egypt American University in Cairo Cairo Egypt 11835 [] Benjamin Moore [] [] [] [] HDRUK
  • Ensembl Train the Trainer Workshop, American University in Cairo, 23rd January 2020

    23 January 2020

    Cairo, Egypt

    Elixir node event
    Ensembl Train the Trainer Workshop, American University in Cairo, 23rd January 2020 https://tess.elixir-europe.org/events/ensembl-train-the-trainer-workshop-american-university-in-cairo-23rd-january-2020 Work with the Ensembl outreach team to develop teaching skills and practice delivering Ensembl Browser workshops. 2020-01-23 09:00:00 UTC 2020-01-23 09:00:00 UTC American University in Cairo, Cairo, Egypt American University in Cairo Cairo Egypt 11835 [] Benjamin Moore [] [] [] [] HDRUK
  • Extracting biological information from gene lists

    23 January 2020

    Cambridge, United Kingdom

    Elixir node event
    Extracting biological information from gene lists https://tess.elixir-europe.org/events/extracting-biological-information-from-gene-lists-06e84be3-c3c2-40da-b84a-1465e1a5571a Many experimental designs end up producing lists of hits, usually based around genes or transcripts. Sometimes these lists are small enough that they can be examined individually, but often it is useful to do a more structured functional analysis to try to automatically determine any interesting biological themes which turn up in the lists. This course looks at the various software packages, databases and statistical methods which may be of use in performing such an analysis. As well as being a practical guide to performing these types of analysis the course will also look at the types of artefacts and bias which can lead to false conclusions about functionality and will look at the appropriate ways to both run the analysis and present the results for publication. Course materials are available [here](https://www.bioinformatics.babraham.ac.uk/training.html#fagl). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3097799&course-title=Extracting%20biological%20information%20from%20gene%20lists).'' 2020-01-23 09:30:00 UTC 2020-01-23 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Bioinformatics for Discovery

    4 February 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-b8d92a0c-662f-4bcf-9e23-e005357edfa2 We are sorry to announce that this course has been cancelled and will not be running in 2020. 2020-02-04 09:00:00 UTC 2020-02-04 09:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Exploring Human Genetic Variation

    11 - 12 February 2020

    Cambridge, United Kingdom

    Elixir node event
    Exploring Human Genetic Variation https://tess.elixir-europe.org/events/exploring-human-genetic-variation-13efb0bd-ea44-48b8-8e1e-7d6fd7ee8c95 Do you want to understand more about genetic variation? Are you aware of the resources available for finding, viewing and exploring variant data? Are you trying to link variant data to phenotypes? This two-day workshop will demonstrate resources and bioinformatics tools available at EMBL-EBI and the Sanger Institute that will aid understanding of human genetic variation. 2020-02-11 09:00:00 UTC 2020-02-12 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Introduction to Multiomics Data Integration

    2 - 5 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Multiomics Data Integration https://tess.elixir-europe.org/events/introduction-to-multiomics-data-integration-beba48af-1cd5-40f2-b174-16fd200be7d5 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-03-02 09:00:00 UTC 2020-03-05 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] [] [] HDRUK
  • Introduction to Multiomics Data Integration and Visualisation

    2 - 6 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Multiomics Data Integration and Visualisation https://tess.elixir-europe.org/events/introduction-to-multiomics-data-integration-and-visualisation This introductory course will highlight the challenges that researchers face in integrating multiomics data sets using biological examples. 2020-03-02 09:00:00 UTC 2020-03-06 13:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Bioinformatics Resources for Protein Biology

    10 - 12 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics Resources for Protein Biology https://tess.elixir-europe.org/events/bioinformatics-resources-for-protein-biology-71c4f4fc-5ec0-4ea8-9e3a-4e67268eeb86 This three day workshop will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. Each day will focus on a particular protein topic, with the aim of helping you get more from your data and also to explore publically-available data that can further support your research. 2020-03-10 09:00:00 UTC 2020-03-12 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Data Visualisation for Biology: A Practical Workshop on Design, Techniques and Tools

    16 - 20 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Data Visualisation for Biology: A Practical Workshop on Design, Techniques and Tools https://tess.elixir-europe.org/events/data-visualisation-for-biology-a-practical-workshop-on-design-techniques-and-tools-e75d7444-88a1-42c8-b062-a65c8816e3bc This course will give insights into, and practical experience in data visualisation for exploring biological data. 2020-03-16 09:00:00 UTC 2020-03-20 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Michelle Mendonca [] [] [] [] HDRUK
  • Introduction to Metabolomics Analysis

    30 March - 2 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Metabolomics Analysis https://tess.elixir-europe.org/events/introduction-to-metabolomics-analysis-95208499-863e-42de-9e3b-fc08328d6583 This course will provide an introduction to metabolomics data analysis. 2020-03-30 09:00:00 UTC 2020-04-02 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • RNA-Sequence Analysis

    20 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    RNA-Sequence Analysis https://tess.elixir-europe.org/events/rna-sequence-analysis-3d0c99e5-ef69-464f-a2ac-66c0ccfaff93 This course will familiarise participants with advanced data analysis methodologies in the field of transcriptomics and to provide practical training in the latest analytical approaches. 2020-04-20 09:00:00 UTC 2020-04-24 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • 2nd European Network Biology Conference: From Networks to Modeling

    20 - 22 April 2020

    Cambridge, United Kingdom

    Elixir node event
    2nd European Network Biology Conference: From Networks to Modeling https://tess.elixir-europe.org/events/2nd-european-network-biology-conference-from-networks-to-modeling The conference will examine novel computational and experimental approaches for generating functional understanding from network modeling and review current trends in network mapping and analysis. 2020-04-20 12:00:00 UTC 2020-04-22 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Networks and Pathways

    23 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Networks and Pathways https://tess.elixir-europe.org/events/networks-and-pathways-33bc9682-193c-4c63-9c89-994c45083776 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-04-23 09:00:00 UTC 2020-04-24 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Advanced Network Analysis and Visualisation in Cytoscape

    23 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Advanced Network Analysis and Visualisation in Cytoscape https://tess.elixir-europe.org/events/advanced-network-analysis-and-visualisation-in-cytoscape This course will focus on advanced network analysis and visualisation functionalities of Cytoscape. The course will feature tutorials on advanced network data visualisation, integration of single cell data into network analysis, and computational access to Cytoscape functionalities. EMBL-EBI resources directly related to interaction and pathway information will also be highlighted. 2020-04-23 09:00:00 UTC 2020-04-24 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Managing Single-Cell Transcriptomics Data

    11 - 15 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing Single-Cell Transcriptomics Data https://tess.elixir-europe.org/events/managing-single-cell-transcriptomics-data-777fd37c-2de8-4ebf-99d8-49597d50c9a8 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-05-11 09:00:00 UTC 2020-05-15 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Starting Single Cell RNA-Seq Analysis

    11 - 15 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Starting Single Cell RNA-Seq Analysis https://tess.elixir-europe.org/events/starting-single-cell-rna-seq-analysis This course trains participants to analyse single cell RNA-seq data utilising Galaxy pipelines, an online open-access resource for the computer-phobic. 2020-05-11 10:15:00 UTC 2020-05-15 13:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • CABANA: Understanding Biodiversity Through Bioinformatics Based Approaches

    18 - 22 May 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Understanding Biodiversity Through Bioinformatics Based Approaches https://tess.elixir-europe.org/events/cabana-understanding-biodiversity-through-bioinformatics-based-approaches This course covers aspects of biodiversity and how bioinformatics plays a role in our understanding of the natural world. 2020-05-18 09:00:00 UTC 2020-05-22 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Managing a Bioinformatics Core Facility

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing a Bioinformatics Core Facility https://tess.elixir-europe.org/events/managing-a-bioinformatics-core-facility-29661ccd-c017-4f20-8a90-165dfa72ad60 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Bioinformatics for Principal Investigators

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Principal Investigators https://tess.elixir-europe.org/events/bioinformatics-for-principal-investigators-941ecaa1-1e36-4f45-b138-c9a40cd09bfa We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Summer School in Bioinformatics

    22 - 26 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Summer School in Bioinformatics https://tess.elixir-europe.org/events/summer-school-in-bioinformatics-77f7f58f-cee6-430c-b176-c28939aac928 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-06-22 09:00:00 UTC 2020-06-26 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Scientific Conferences [] [] [] [] HDRUK
  • Cancer Genomics

    29 June - 3 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-2787b481-b1cb-4721-971a-d68ec96d1cba We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-06-29 09:00:00 UTC 2020-07-03 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Systems Biology: From Large Datasets to Biological Insight

    6 - 10 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Systems Biology: From Large Datasets to Biological Insight https://tess.elixir-europe.org/events/systems-biology-from-large-datasets-to-biological-insight-7d62660b-3786-4a60-a850-004aace58aaf We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-07-06 09:00:00 UTC 2020-07-10 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Metagenomics Bioinformatics

    13 - 17 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics Bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics-91c48308-c2e6-48eb-b1ea-113f79da1edd We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-07-13 09:00:00 UTC 2020-07-17 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Proteomics Bioinformatics

    19 - 24 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Proteomics Bioinformatics https://tess.elixir-europe.org/events/proteomics-bioinformatics-9b73f6df-951a-4be8-98df-a6d73fcb5f07 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-07-19 09:00:00 UTC 2020-07-24 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Structural Bioinformatics

    14 - 18 September 2020

    Cambridge, United Kingdom

    Elixir node event
    Structural Bioinformatics https://tess.elixir-europe.org/events/structural-bioinformatics-de38d612-6cf9-481f-9a57-3a54511976de We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-09-14 09:00:00 UTC 2020-09-18 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Single-Cell RNA-Sequence Analysis

    5 - 8 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Single-Cell RNA-Sequence Analysis https://tess.elixir-europe.org/events/single-cell-rna-sequence-analysis We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-10-05 09:00:00 UTC 2020-10-08 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Exploring Biological Sequences

    14 - 16 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Exploring Biological Sequences https://tess.elixir-europe.org/events/exploring-biological-sequences-29445985-7c94-447f-b262-fc5d6208cfd0 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-10-14 09:00:00 UTC 2020-10-16 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] [] [] [] HDRUK
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