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8 events found

Target audience: Post-docs  or Bioinformaticians 

  • Multi-scale study of 3D Chromatin structure

    10 - 11 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Multi-scale study of 3D Chromatin structure https://tess.elixir-europe.org/events/multi-scale-study-of-3d-chromatin-structure This workshop will introduce delegates to a Virtual Research Environment (VRE), created by the Multi-scale complex Genomics project (MuG), to facilitate the analysis and interpretation of the genome. 2017-04-10 09:30:00 UTC 2017-04-11 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] Experimental ResearchersBioinformaticians 30 workshops_and_courses registration_of_interest HDRUK
  • Computational approaches to the study of protein interactions and rational drug design

    10 - 14 April 2017

    Padova, Italy

    Computational approaches to the study of protein interactions and rational drug design https://tess.elixir-europe.org/events/computational-approaches-to-the-study-of-protein-interactions-and-rational-drug-design In this workshop, participants will familiarise with docking approaches to the study of protein-protein interactions (PPIs) and protein-small molecule interactions. Irreversible binders design using molecular docking and computational methods to rational drug design will be also described, as well as the functional role of the intrinsically disordered proteins. The Plenary lectures of N. Davey (10.02.2017), A. Bonvin, S. Forli and S. Moro (11.02.2017) will be open and free to everyone but require application. Practical sessions are limited to 30 participants. On the afternoon of day 3, participants can bring their own data (e.g. proteins they want to study interactions for). They will be split in groups based on the type of system they want to study (i.e protein-protein, protein-small ligand interactions or virtual screening) and will analyse it assisted by A. Bonvin and S. Forli. 2017-04-10 14:00:00 UTC 2017-04-14 13:00:00 UTC Allegra Via, Lisanna Paladin, Marco Carraro Campus di Biologia e Biomedicina “Fiore di Botta”, University of Padova, Via del Pescarotto, 8, Padova, Italy Campus di Biologia e Biomedicina “Fiore di Botta”, University of Padova, Via del Pescarotto, 8 Padova Provincia di Padova Italy Protein-protein interactions Protein-protein interactions Protein-ligand interactions Protein-ligand interactions Protein interactions Medicinal chemistry University of Padova, Italy elixir.ita.training@gmail.com ELIXIR Italy Structural biologistsBioinformaticians 30 workshops_and_courses first_come_first_served Bioinformaticsprotein structureDrug designDockingProtein interactions
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • Sequences and genomic features in R

    4 September 2017

    Melbourne, Australia

    Sequences and genomic features in R https://tess.elixir-europe.org/events/sequences-and-genomic-features-in-r This course introduces Bioconductor, a comprehensive collection of R packages related to bioinformatics. We will demonstrate the Bioconductor way of doing things and how to work with biological data types, and equip you to confidently approach whichever specific Bioconductor packages you need. Pre-requisite To attend this class, you must have attended our introductory R course or be reasonably familiar with the R language. 2017-09-04 14:00:00 UTC 2017-09-04 16:00:00 UTC Monash Bioinformatics Platform Melbourne, Melbourne, Australia Melbourne Melbourne Australia Bioinformatics Monash University Dr Sonika Tyagi, bioinformatics.platform@monash.edu [] PhD studentsPost-docsBioinformaticiansResearchers workshops_and_courses registration_of_interest R-programmingbioinformaticsBioconductor
  • Training course on Machine Learning for Biologists

    4 - 7 September 2017

    San Michele all'Adige, Italy

    Training course on Machine Learning for Biologists https://tess.elixir-europe.org/events/training-course-on-machine-learning-for-biologists The aim of the course is to provide a practical introduction to the analysis of "omics" data. Topics will range from data visualization/exploration to univariate/multivariate analysis and machine learning. Practical examples and applications will be illustrated by using R and Python. 2017-09-04 14:00:00 UTC 2017-09-07 13:00:00 UTC Vincenza Colonna, Alessandro Cestaro Fondazione Edmund Mach, Palazzo della Ricerca e della Conoscenza, Via E. Mach 1, San Michele all'Adige, San Michele all'Adige, Italy Fondazione Edmund Mach, Palazzo della Ricerca e della Conoscenza, Via E. Mach 1, San Michele all'Adige San Michele all'Adige Province of Trento Italy 38010 Gene expression Machine learning Fondazione Edmund Mach, San Michele all’Adige (TN), Italy elixir.ita.training@gmail.com, alessandro.cestaro@fmach.it ELIXIR Italy Computational biologistsBioinformaticiansbiological data analysts 24 workshops_and_courses registration_of_interest omics datamachine learning
  • Nextflow 2019

    17 - 20 September 2019

    Barcelona, Spain

    Elixir node event
    Nextflow 2019 https://tess.elixir-europe.org/events/nextflow-2019 **Create. Deploy. Share.** Nextflow is a popular workflow management solution that allows scientists and engineers to create data-driven applications which can be effortlessly scaled across clusters and clouds. It simplifies the writing of complex distributed computational workflows in a portable and replicable manner. Nextflow allows the seamless parallelization and deployment of any existing application with minimal development and maintenance overhead, irrespective of the original programming language. Containerisation technologies and inbuilt executors for the most popular cluster systems (SLURM, PBS, UGE, LSF, etc) and cloud infrastructure (AWS Batch & Google Cloud Platform) ensures unrivalled deployment. The built-in support for code repositories provides code sharing for the collaborations that matter most and enable your applications to touch the world. But most of all, the active community of that has formed around Nextflow provides inspirational, best-in-class technical examples from global leaders in workflow deployment as well as lasting relationships in a growing community. __Nextflow Training - 17th and 18th September 2019__ The week kicks off with a two-day intensive workshop intended for Nextflow beginners and intermediate users. In these practical sessions, participants learn about Nextflow technology starting from basic through to advanced concepts, with the expectation they will acquire the proficiency to develop and deploy their own workflows. The workshop will be provided across 14 topics including processes, operators, executors, containers and best practices. A GitHub repository will be provided with all the necessary material and software as well as AWS cloud instances for running the deployments in the relevant practical sessions. The audience is expected to have at least some prior basic command line experience. __Nextflow Camp - 19th and 20th September 2019__ Nextflow Camp brings together the Nextflow community of developers and users to discuss the state of Nextflow technology, the latest developments and tackle the open questions in a collaborative manner. Each day is split between talks from Nextflow experts and tutorial breakout sessions where participants get a flavour for the possibilities for their own applications. We hope to see you in Barcelona in September! 2019-09-17 09:00:00 UTC 2019-09-20 18:00:00 UTC Paolo Di Tommaso PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader, Barcelona, Spain PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader Barcelona Barcelona Spain 08003 Centre for Genomic Regulation training@crg.eu AWS Bioinformaticians 50 meetings_and_conferencesworkshops_and_courses first_come_first_served NextflowWorkflowsContainersCloud ComputingHPC
  • R for Reproducible Scientific Analysis

    14 - 17 July 2020

    R for Reproducible Scientific Analysis https://tess.elixir-europe.org/events/r-for-reproducible-scientific-analysis-d1cbf082-e0f6-4791-b690-68d062097d5c Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. The course is aimed at both Bioinformaticians and Biologists who want to learn how to manipulate, process data, and make plots using R. Some best practices for scientific programming will be explained: breakdown analyses into modular units, task automation, and encapsulation. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2020-07-14 09:00:00 UTC 2020-07-17 13:10:00 UTC Vincenza Colonna (CNR), Loredana Le Pera (CNR), Allegra Via (CNR) Bioinformatics Data visualisation Data management Computer science National Research Council of Italy elixir.ita.training@gmail.com, loredanalepera@gmail.com [] BioinformaticiansBiologistsBioinformaticians and Biologists who want to learn how to manipulate, process data, and make plots using R 15 workshops_and_courses registration_of_interest R-programmingR StudioData VisualizationData handling
  • WEBINAR: Detection of and phasing of hybrid accessions in a target capture dataset

    10 June 2021

    WEBINAR: Detection of and phasing of hybrid accessions in a target capture dataset https://tess.elixir-europe.org/events/https-unimelb-zoom-us-webinar-register-wn_czvhidkxst-6xyw4pg3b4g Hybridisation plays an important role in evolution, leading to the exchange of genes between species and in some cases generate new lineages. The use of molecular methods has revealed the frequency and importance of reticulation events is higher than previously thought and this insight continues with the ongoing development of phylogenomic methods that allow novel insights into the role and extent of hybridisation. Hybrids notoriously provide challenges for the reconstruction of evolutionary relationships, as they contain conflicting genetic information from their divergent parental lineages. However, this also provides the opportunity to gain insights into the origin of hybrids (including autopolyploids). This webinar explores some of the challenges and opportunities that occur when hybrids are included in a target capture sequence dataset. In particular, it describes the impact of hybrid accessions on sequence assembly and phylogenetic analysis and further explores how the information of the conflicting phylogenetic signal can be used to detect and resolve hybrid accessions. The webinar will showcase a novel bioinformatic workflow, [HybPhaser](https://www.biorxiv.org/content/10.1101/2020.10.27.354589v2), that can be used to detect and phase hybrids in target capture datasets and will provide the theoretical background and concepts behind the workflow. **Presenter:** Dr Lars Nauheimer, Australian Tropical Herbarium **Date/time:** 10 June 2021 - 12:00-13:00 AEST / 11:30 - 12:30 ACST / 10:00-11:00 AWST [**Register here**](https://unimelb.zoom.us/webinar/register/WN_AZ-ezvarRhqH-eg6TFMG5w) 2021-06-10 12:00:00 UTC 2021-06-10 13:00:00 UTC Australian BioCommons Phylogenetics Australian Biocommons Melissa Burke melissa@biocommons.org.au [] BioinformaticiansBiologists 500 workshops_and_courses first_come_first_served phylogenetics

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