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38 events found

Scientific topics: Epigenetics  or RNA-Seq 

  • RNA-Seq using R

    28 September 2015

    Melbourne, Australia

    RNA-Seq using R https://tess.elixir-europe.org/events/rna-seq-using-r The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. Day one (Programming in R) is optional, for those well-versed in the R programming language, or programming in general. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. 2015-09-28 09:00:00 UTC 2015-09-28 00:00:00 UTC Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computer science Biomedical science Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • RNASeq using R

    30 November 2015

    Melbourne, Australia

    RNASeq using R https://tess.elixir-europe.org/events/rnaseq-using-r RNA-Seq using R 2015-11-30 09:00:00 UTC 2015-11-30 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computational biology Software engineering RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • Analysis of mapped NGS data with SeqMonk

    3 February 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of mapped NGS data with SeqMonk https://tess.elixir-europe.org/events/analysis-of-mapped-ngs-data-with-seqmonk-43412e62-e3fc-4434-a56e-41cec9577dbf [SeqMonk](http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/) is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets. This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides. Further information is available [here](http://www.bioinformatics.babraham.ac.uk/training.html#seqmonk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Analysing%20mapped%20NGS%20data%20with%20SeqMonk_bioinfo-seqmonk_03.02.2016_1572361&CourseName=Analysing%20mapped%20NGS%20data%20with%20SeqMonk&CourseDate=03.02.2016&CourseDuration=1&EventID=1572361).'' 2016-02-03 09:30:00 UTC 2016-02-03 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Exome sequencing Data mining Data visualisation ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • RNA-Seq Data Analysis Using Galaxy

    26 May 2016

    Sydney, Australia

    RNA-Seq Data Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-26 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Westmead, Sydney, Australia Children’s Medical Research Institute, Westmead Sydney Australia Data architecture, analysis and design RNA-Seq [] [] [] workshops_and_courses [] BPAABRGalaxy
  • RNA-Seq Analysis Using Galaxy

    26 - 27 May 2016

    Sydney, Australia

    RNA-Seq Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-27 00:00:00 UTC Children’s Medical Research Institute Sydney, Australia Sydney Australia Biomedical science RNA-Seq Bioinformatics [] [] [] workshops_and_courses [] BPAABRBioinformatics
  • RNAseq using R

    1 - 2 June 2016

    Melbourne, Australia

    RNAseq using R https://tess.elixir-europe.org/events/rnaseq-using-r-632bdf76-dd3d-4c41-9e65-b175a2bb37e6 The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2016-06-01 09:00:00 UTC 2016-06-02 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy

    14 June 2016

    University of Melbourne, Australia

    RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-the-genomics-virtual-laboratory-and-galaxy This tutorial covers the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2016-06-14 09:00:00 UTC 2016-06-14 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Genomics RNA-Seq Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] BioinformaticsABRVLSCI
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • Bioinformatics & DNA Methylation Analysis

    22 June 2016

    Adelaide, Australia

    Bioinformatics & DNA Methylation Analysis https://tess.elixir-europe.org/events/bioinformatics-dna-methylation-analysis The Epigenetics Consortium of South Australia (EpiCSA) & the University of Adelaide's Bioinformatics Hub invite you to the second workshop of 2016, “Bioinformatics & DNA Methylation Analysis”. In this workshop, we will discuss Bioinformatics and Epigenetics analysis, and introduce computational processes to study DNA methylation. 2016-06-22 09:00:00 UTC 2016-06-22 00:00:00 UTC University of Adelaide Horace Lamb Building, University of Adelaide, Adelaide, Australia Horace Lamb Building, University of Adelaide Adelaide Australia Data architecture, analysis and design Epigenetics Bioinformatics [] [] [] workshops_and_courses [] ABR
  • RNA-Seq Next Generation Sequencing Analysis Workshop

    26 - 28 October 2016

    Leicester, United Kingdom

    RNA-Seq Next Generation Sequencing Analysis Workshop https://tess.elixir-europe.org/events/rna-seq-next-generation-sequencing-analysis-workshop This course will provide an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping), differential expression, de novo and referenced based transcriptome assembly, annotation and gene discovery of RNA sequencing (RNA-Seq) data. The course will be delivered using a mixture of lectures and computer based hands on practical sessions using real data. This course is aimed at wet-lab biologists who are involved in research projects that will require the handling and analysis of NGS data. A significant proportion of the course will be computer-based using command line tools in the Unix environment, therefore, in order to gain maximum benefit from the course all attendees will be required to have basic Unix skills. This means applicants must at a minimum be able to move easily around the file system and make directories (e.g. pwd, cd, ls, mkdir), manage files (e.g. cp, mv, ln, rm, less, head, tail, wc) and search with grep. 2016-10-26 00:00:00 UTC 2016-10-28 00:00:00 UTC University of Leicester University of Leicester - College Court Conference Centre, Leicester, United Kingdom University of Leicester - College Court Conference Centre Leicester United Kingdom LE2 3UF Bioinformatics Sequencing RNA-Seq [] [] [] workshops_and_courses [] NGSRNA-SeqBioinformatics
  • EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis

    14 - 15 November 2016

    Melbourne, Australia

    EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis https://tess.elixir-europe.org/events/embl-abr-goblet-hands-on-training-rna-seq-data-analysis A one and a half days workshop that covers hands-on introduction to RNA-seq data analysis. The attendees would learn about the theory, tools and file formats involved right from raw RNA sequence to differentially expressed genes. The workshop would have alternating short lectures and hands-on exercises. 2016-11-14 09:00:00 UTC 2016-11-15 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data architecture, analysis and design Data management Computational biology Bioinformatics RNA-Seq [] [] [] meetings_and_conferences [] ABRVLSCIBioinformaticslifescience
  • Analysis of DNA Methylation using Sequencing

    2 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally, the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Course materials are available [here](http://www.bioinformatics.babraham.ac.uk/training.html#bsseq). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1827776&course-title=The%20Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2016-12-02 09:30:00 UTC 2016-12-02 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • ADER17 - Analysis of Differential Expression with RNAseq

    17 April 2017

    Oeiras, Portugal

    Elixir node event
    ADER17 - Analysis of Differential Expression with RNAseq https://tess.elixir-europe.org/events/ader17-analysis-of-differential-expression-with-rnaseq    IMPORTANT DATES for this Course   Deadline for applications: April 10th 2017   Course dates: April 17th - April 20th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application, until we reach 20 participants. Course description Overview High-throughput technologies allow us to detect transcripts present in a cell or tissue. This course covers practical aspects of the analysis of differential gene expression by RNAseq. Participants will be presented with real world examples and work with them in the training room, covering all the steps of RNAseq analysis, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial steps of secondary analysis, such as functional enrichment of the obtained gene lists. Target Audiences Life Scientists who want to be able to use NGS data to evaluate gene expression (RNAseq). Computational researchers that wish to get acquainted with the concepts and methodologies used in RNAseq are also welcome. Participants are encouraged to bring their own data and will have the opportunity to apply the concepts learned in the course. Pre-requisites Familiarity with elementary statistics and a few basics of scripting in R. Please have a look at the following resources and gauge your ability to use R in statitics at the basic level: Introduction to Data Science with R Videos from Coursera's four week course in R Statistics at Square One - BMJ Basic Unix command line skills, such as being able to navigate in a directory tree and copy files. See, for example, "Session 1" of the Software Carpentry training for a Unix introduction (Shell-novice material from the Software Carpentry Foundation). 2017-04-17 07:30:00 UTC 2017-04-17 07:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 1000-029 Transcriptomics RNA-Seq [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • RNA-Seq Data Analysis Workshop Using R

    18 - 21 April 2017

    RNA-Seq Data Analysis Workshop Using R https://tess.elixir-europe.org/events/rna-seq-data-analysis-workshop-using-r The RNA-Seq Data Analysis With R workshop will introduce attendees to the R software environment and the specific skills and applications used in R-based RNA-Seq data analysis. Register: http://www.bioplatforms.com/rna-data-analysis-with-r-2017/ 2017-04-18 23:00:00 UTC 2017-04-21 01:30:00 UTC RNA-Seq [] [] [] workshops_and_courses [] []
  • Analysis of DNA Methylation using Sequencing

    14 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-82f6a29e-f4ac-4f20-a329-90b60855ae5f This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923832&course-title=Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2017-06-14 08:30:00 UTC 2017-06-14 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • RNA-seq Analysis Workshop

    6 - 7 July 2017

    Saint Lucia, Australia

    RNA-seq Analysis Workshop https://tess.elixir-europe.org/events/rna-seq-analysis-workshop In this workshop, you will learn how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the limma-voom analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available. Some basic R knowledge is assumed. If you are not familiar with the R statistical programming language we strongly encourage you attend our R/Bash workshop or a similar course prior to attending. 2017-07-06 09:00:00 UTC 2017-07-07 17:00:00 UTC COMBINE Australia The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Australia RNA-Seq University of Queensland [] [] workshops_and_courses [] BioinformaticsRNA-Seq
  • Training Course on RNA-Seq data analysis

    18 - 20 July 2017

    Milano, Italy

    Training Course on RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-rna-seq-data-analysis The course will provide students with theoretical and practical knowledge on how to perform bioinformatic analyses of RNA-Seq data, mainly aimed at the identification of genes differentially expressed across different conditions. 2017-07-18 14:00:00 UTC 2017-07-20 12:00:00 UTC Allegra Via, Giulio Pavesi, Federico Zambelli, Matteo Chiara Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26, Milano, Italy Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26 Milano Città Metropolitana di Milano Italy RNA-Seq University of Milan, Milan, Italy elixir.ita.training@gmail.com, giulio.pavesi@unimi.it ELIXIR Italy PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics. 30 workshops_and_courses [] RNA-SeqGalaxy
  • Training Course on Best practices for RNA-Seq data analysis

    27 - 29 September 2017

    Fisciano, Italy

    Training Course on Best practices for RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-best-practices-for-rna-seq-data-analysis Next-generation sequencing (NGS) of RNA libraries (RNA-Seq) has become increasingly common and it largely replaced microarray technology for gene expression profiling. The aim of this course is to get a deeper understanding of RNA-Seq experiments, providing a theoretical introduction to the data processing steps, together with practical sessions illustrating the use of the most popular data analysis tools. The classroom size is limited to 25 participants to optimize the learning and the interaction with the instructors. Starting from the raw sequenced data coming from different phenotypical samples (e.g disease vs healthy control samples), genes which are differentially expressed between the two conditions are determine. Some strategies are illustrated for detecting alternative splicing products, predicting novel isoforms and gene fusion events. Some methods for downstream analysis are described to give insight into how biological knowledge can be generated from RNA-Seq experiments. A lecture on single-cell RNA-Seq will provide an idea of how transcriptome data from individual cells is now emerging as a powerful tool, allowing the study of cell-to-cell gene expression heterogeneity in the same tissue. 2017-09-27 09:15:00 UTC 2017-09-29 16:30:00 UTC Anna Marabotti (University of Salerno and ELIXIR-IIB Training Team, Italy), Roberto Tagliaferri (University of Salerno, Italy), Alessandro Weisz (University of Salerno, Italy), Loredana Le Pera (ELIXIR-IIB Training Team and IIT, Italy), Allegra Via (ELIXIR-IIB Training Coordinator, CNR-IBPM, Italy) Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132, Fisciano, Italy Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132 Fisciano Provincia di Salerno Italy 84084 Transcriptomics RNA splicing Sequencing Bioinformatics RNA-Seq Gene expression Campus di Fisciano, University of Salerno, Italy elixir.ita.training@gmail.com, amarabotti@unisa.it ELIXIR Italy PhD students and young researchers in the life science and computational biology field who are planning to use RNA-seq data and are looking for the best practices to analyze these types of data 25 workshops_and_courses first_come_first_servedregistration_of_interest NGSRNA-SeqBioinformaticsData analysisHigh Throughput Sequencing AnalysisGene Expression
  • ELIXIR-EXCELERATE Train the Trainer

    27 - 29 September 2017

    Fisciano, Italy

    ELIXIR-EXCELERATE Train the Trainer https://tess.elixir-europe.org/events/elixir-excelerate-train-the-trainer ELIXIR-IIB, in cooperation with the ELIXIR-EXCELERATE Train-The-Trainer programme, will hold a Train the Trainer (TtT) event in connection with a course on “Best Practices for RNA-Seq analysis”. The course is made up of four sessions, covering: Learning principles and how they apply to training and teaching; Teaching techniques that can be used to enhance learner engagement and participation; Assessment and feedback in training and teaching; Lesson, course, and materials design. 2017-09-27 12:13:00 UTC 2017-09-29 12:13:00 UTC Allegra Via, Pedro Fernandes, Anna Marabotti, Roberto Tagliaferri, Loredana Le Pera Campus di Fisciano, Università di Salerno, Fisciano, Italy Campus di Fisciano, Università di Salerno Fisciano Provincia di Salerno Italy 84084 RNA-Seq RNA Campus di Fisciano, University of Salerno, Italy elixir.ita.training@gmail.com [] teachers / trainersAnyone who wants to become a teacher / trainer or a better one 15 workshops_and_courses registration_of_interest TtT, Train the Trainer, Educational psychology, cognitive science, teaching practices
  • Analysis of DNA Methylation using Sequencing

    15 November 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-dea9cf78-4e98-4523-bbff-9d745765ec98 This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2168507&course-title=Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2017-11-15 09:30:00 UTC 2017-11-15 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • ResBaz Brisbane 2018

    6 - 8 June 2018

    Brisbane , Australia

    ResBaz Brisbane 2018 https://tess.elixir-europe.org/events/resbaz-brisbane-2018 2018-06-06 08:30:00 UTC 2018-06-08 17:30:00 UTC ResBaz Southbank campus of Griffith University, Brisbane , Australia Southbank campus of Griffith University Brisbane Australia 4101 RNA-Seq Bioinformatics Griffith UniversityUniversity of QueenslandQCIFUniversity of Southern QueenslandQueensland University of Technology resbazbris@gmail.com Amazon Web Services [] workshops_and_courses [] pythonbioinformatics RNA-Seq
  • Analysis of DNA Methylation using Sequencing

    27 June 2018

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-827a3be6-8191-4d6f-abfe-0d401570d477 This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2426618&course-title=Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2018-06-27 08:30:00 UTC 2018-06-27 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Single-Cell RNAseq

    3 - 7 December 2018

    Norwich, United Kingdom

    Single-Cell RNAseq https://tess.elixir-europe.org/events/single-cell-rnaseq-workshop The course provides an introduction to Single Cell Genomics. It covers several aspects such as the experimental design, cell sorting and processing for production of quality samples for sequencing, generation of sequencing data, assessing the quality of sequence data, data visualisation, differential expression analyses and identifying Copy Number Variants at the single cell level. 2018-12-03 09:00:00 UTC 2018-12-07 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Cell biology RNA-Seq [] training@earlham.ac.uk [] PhD studentspost-docsWet-lab Researchers workshops_and_courses [] []
  • CyVerse UK RNASeq Workshop

    10 - 12 December 2018

    Norwich, United Kingdom

    CyVerse UK RNASeq Workshop https://tess.elixir-europe.org/events/cyverse-uk-rnaseq-workshop This meeting is focused on researchers who are either at the beginning of their studies or have moved onto a new subject area and will be analysing RNAseq expression data as part of their studies. This workshop is designed for non-bioinformatic experts and will be run at a level appropriate for wet-lab researchers without previous bioinformatics experience. We will provide hands-on sessions that will describe the use of software tools that can interrogate RNAseq data and the biological relevance of these tools. The workshop will also demonstrate different ways to visualise RNAseq data. Prior to the workshop we will provide an example dataset that will be analysed as part of the workshop. This hands-on training will be useful for the analysis of delegates’ own data. In addition we include a session on Open Data and data reuse strategies that can benefit your research. We are also offering a optional one-day Genomics Data Carpentry (Monday December 10) for researchers who have limited or no previous command-line experience. This optional section will introduce you to analysing data in R, and better prepare you for future analyses. The cost of this additional session is £20 to cover food, refreshments and administration. 2018-12-10 09:00:00 UTC 2018-12-12 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ RNA-Seq [] training@earlham.ac.uk [] PhD Studentspost-docs workshops_and_courses first_come_first_served []
  • Analysis of DNA Methylation using Sequencing

    14 December 2018

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-451867ff-b0e1-4e80-9606-54c7ada67d97 This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. The training room is located on the first floor and there is currently no level access. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2653218&course-title=Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2018-12-14 09:30:00 UTC 2018-12-14 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Revolutionizing Next-Generation Sequencing (3rd edition)

    25 - 26 March 2019

    Antwerpen, Belgium

    Revolutionizing Next-Generation Sequencing (3rd edition) https://tess.elixir-europe.org/events/revolutionizing-next-generation-sequencing-3rd-edition After two successful editions (Jan 2015, Leuven and March 2017, Antwerp), VIB is proud to present the third edition of this Tools & Technologies conference. VIB believes that the revolutionary discoveries enabled by NGS are not yet at its zenith and that the technology can go much further. During this 3rd edition VIB will bring together over 30 top scientists and technology developers form both industry and academia. They will discuss emerging tools and approaches in several sessions such as: • Long reads, Genome Structure and Mapping • Epigenomics • Metagenomics • Spatial transcriptomics • Population Scale and Clinical Sequencing • Single Cell Sequencing • Emerging technologies In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions and the conference dinner. Also young scientists are encouraged to showcase their own work to the international research community by oral or poster presentation! Information for poster submissions: The format for your poster should be: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 11/02/2019 • Late Registration: 11/03/2019 • Abstract deadline: 21/01/2019 2019-03-25 08:00:00 UTC 2019-03-26 18:00:00 UTC VIB Conferences BluePoint Antwerpen, 9, Filip Williotstraat, Antwerpen, Belgium BluePoint Antwerpen, 9, Filip Williotstraat Antwerpen Antwerpen Belgium 2600 Genomics Genotype and phenotype Genotyping experiment Epigenomics Epigenetics Metagenomics Metagenomic sequencing Transcriptomics Sequencing Population genetics Population genomics Mapping [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be BioradBiokeLexogenAnalisBio-techneBGI [] 350 meetings_and_conferences [] Genome Structure Genome MappingEpigenomicsMetagenomicsSpatial transcriptomicsPopulation Scale clinical sequencingSequencingSingle Cell Sequencing
  • NeLS hands-on workshop

    3 June 2019

    Oslo, Norway

    Elixir node event
    NeLS hands-on workshop https://tess.elixir-europe.org/events/nels-hands-on-workshop The sixth in a series of hands-on bioinformatics workshops organized in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customizable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-06-03 10:00:00 UTC 2019-06-03 14:00:00 UTC ELIXIR UiO node Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway 0373 Data management Bioinformatics RNA-Seq university of Oslo [] PhD studentspost-docs 20 workshops_and_courses first_come_first_served []
  • Introducing UTAP: User-friendly Transcriptome Analysis Pipeline

    9 September 2019

    Rehovot, Israel

    Introducing UTAP: User-friendly Transcriptome Analysis Pipeline https://tess.elixir-europe.org/events/introducing-utap-user-friendly-transcriptome-analysis-pipeline RNA-Seq (including bulk Mars-seq) technology is routinely used to characterize the transcriptome and detect gene expression differences among cell types, genotypes and conditions. In order to enable fast and user-friendly data analysis, we developed an intuitive and scalable transcriptome pipeline: UTAP that executes the full process on Weizmann computer cluster (WEXAC), starting from sequences and ending with a comprehensive report. The workshop includes a lecture regarding the analysis steps UTAP performs and a hands on session to run the pipeline and understand the outputs it produces. Registration is required and will open near the workshop date. First you need to register for the BBCU activities here: http://bip.weizmann.ac.il/activbin/events (click on the LogIn button) and then you need to register for the workshop. (click on the Register button) 2019-09-09 13:30:00 UTC 2019-09-09 16:00:00 UTC Dr. Dena Leshkowitz Feinberg Room B, Rehovot, Israel Feinberg Room B Rehovot Israel Israel RNA-Seq [] [] [] workshops_and_courses registration_of_interest []
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 October 2019

    Melbourne, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-39b2ddbd-bddb-44c7-bbec-b317ebdb7224 2019-10-04 01:00:00 UTC 2019-10-04 04:00:00 UTC Melbourne Bioinformatics Arts West North Wing Room 355 Professors Walk University of Melbourne Carlton, VIC 3053, Melbourne, Australia Arts West North Wing Room 355 Professors Walk University of Melbourne Carlton, VIC 3053 Melbourne Australia 3053 RNA-Seq Bioinformatics University of Melbourne [] [] [] [] bioinformaticsRNA-SeqGalaxy

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