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36 events found

Organizer: Pedro Fernandes  or ELIXIR Norway 

  • PDA17 Proteomics Data Analysis

    6 March 2017

    Oeiras, Portugal

    Elixir node event
    PDA17 Proteomics Data Analysis https://tess.elixir-europe.org/events/proteomics-data-analysis    IMPORTANT DATES for this Course   Deadline for applications: Feb 25th 2017 (New)   Course date: March 6th - March 10th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering both protein identification and quantification. The core focus will be on shotgun proteomics data. Quantification through isobaric labels (iTRAQ, TMT) and label-free precursor peptide (MS1) ion intensities will also be introduced. The course will rely exclusively on free and user-friendly software, all of which can be directly applied in your lab upon your return from the course. An introduction to available online resources and repositories will also be given. Here you will see how to link the results from proteomic experiments with external data to conduct pathway, gene ontology and interaction analyses. In the course, you will also learn how to submit data to the ProteomeXchange online repositories, and how to browse and reprocess publicly available data from these repositories. The course will provide a solid basis for beginners, but also new perspectives to those already familiar with standard data interpretation procedures in proteomics. Note: this is a highly interactive course. It requires that the participants interact with each other and with the course instructors, in order to reach the learning outcomes in full. Course Pre-requisites The participants should have a basic knowledge about mass spectrometry based proteomics. Experience in analyzing proteomics data is an advantage, but not mandatory. The course does not require advanced computer skills. 2017-03-06 09:30:00 UTC 2017-03-06 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Mass spectrometry Proteomics Instituto Gulbenkian de Ciência bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • PGDH17 Population Genetics and Demographic History: model-based approaches

    13 March 2017

    Oeiras, Portugal

    Elixir node event
    PGDH17 Population Genetics and Demographic History: model-based approaches https://tess.elixir-europe.org/events/pgdh17-population-genetics-and-demographic-history    IMPORTANT DATES for this Course    Deadline for applications: Mar 6th 2017 (New)    Course date: March 13th - March 17th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Genetic and genomic data are increasingly used by ecologists and evolutionary biologists in general. It has thus become important for many biologists with different levels of experience to produce and analyse genetic (and genomic) data. In this course we will take a practical approach to the analysis of genetic and genomic data, but we will also provide some of the theoretical background required to understand the outputs of the software used. This course will be organised so as to mix lectures where important notions are introduced with practicals where freely available software will be used. While this will not be the focus of the course, we will also introduce and discuss genealogical (coalescent-based) simulation methods and those based on forward-in-time simulations. Altogether this will allow to discuss the potentialities and limitations of the tools available to the community. In this five-day course we will introduce the main concepts that underlie many of the models that are frequently used in population genetics. We will focus on the importance of demographic history (e.g. effective sizes and migration patterns) in shaping genetic data. We will go through the basic notions that are central to population genetics, insisting particularly on the statistics used to measure genetic diversity and population differentiation. The course will also cover a short introduction to coalescent theory, Bayesian inference in population genetics and data simulation. We will also introduce two methods that have been recently developed to analyse genomic data. The PSMC of Li and Durbin reconstructs the demographic history of a species or population with the genome of a single individual. The Rehh package is an R implementation of the Extended Haplotype Homozygosity (EHH) test for selective sweeps and looks for signals of selection based on the analysis of genomic regions. Most theory will be put into practice in practical sessions, analyzing real and/or simulated datasets. In these sessions, we will look at measures of genetic diversity and differentiation and use methods to infer demographic history. We will learn how to perform coalescent simulations of genetic/genomic data (using SPAms and ms). We will also show how to simulated data for PSMC analyses. This will allow users to compare the PSMC obtained with real data to those obtained for the models they used. We will also look at how habitat fragmentation can be simulated using an in-house program. Some exercises will make use of R scripts (R being a freely available statistical program). Basic R knowledge is a pre-requisite but we will provide a short introduction to R. The R statistical package is a very powerful tool to analyse data outputs from many population genetics software, and can also be used to simulate genetic data under simple demographic scenarios. Course Pre-requisites Basic molecular population genetics and molecular ecology. Basic R knowldedge. Basic knowledge of genomic data. 2017-03-13 09:30:00 UTC 2017-03-13 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Genomics Population genetics [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • ADER17 - Analysis of Differential Expression with RNAseq

    17 April 2017

    Oeiras, Portugal

    Elixir node event
    ADER17 - Analysis of Differential Expression with RNAseq https://tess.elixir-europe.org/events/ader17-analysis-of-differential-expression-with-rnaseq    IMPORTANT DATES for this Course   Deadline for applications: April 10th 2017   Course dates: April 17th - April 20th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application, until we reach 20 participants. Course description Overview High-throughput technologies allow us to detect transcripts present in a cell or tissue. This course covers practical aspects of the analysis of differential gene expression by RNAseq. Participants will be presented with real world examples and work with them in the training room, covering all the steps of RNAseq analysis, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial steps of secondary analysis, such as functional enrichment of the obtained gene lists. Target Audiences Life Scientists who want to be able to use NGS data to evaluate gene expression (RNAseq). Computational researchers that wish to get acquainted with the concepts and methodologies used in RNAseq are also welcome. Participants are encouraged to bring their own data and will have the opportunity to apply the concepts learned in the course. Pre-requisites Familiarity with elementary statistics and a few basics of scripting in R. Please have a look at the following resources and gauge your ability to use R in statitics at the basic level: Introduction to Data Science with R Videos from Coursera's four week course in R Statistics at Square One - BMJ Basic Unix command line skills, such as being able to navigate in a directory tree and copy files. See, for example, "Session 1" of the Software Carpentry training for a Unix introduction (Shell-novice material from the Software Carpentry Foundation). 2017-04-17 07:30:00 UTC 2017-04-17 07:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 1000-029 Transcriptomics RNA-Seq [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • Hands-on data analysis workshop

    6 September 2019

    Bergen, Norway

    Elixir node event
    Hands-on data analysis workshop https://tess.elixir-europe.org/events/hands-on-data-analysis-workshop-d95f0050-8a20-4a7a-a65b-bec6855f7f58 Format: Bring your laptop with an updated internet browser (Chrome, Firefox or Safari). This is an interactive workshop! Register free here: https://forms.gle/dvrevioB7cmaMMpA6 During the workshop, you will have the opportunity to work on a dataset/problem/question of your choice (such as your own research question, or e.g. a Galaxy analysis tutorial) with our assistance. This is also a good opportunity to get more experience on: - Services for sensitive data (TSD)" including computing on the Colossus cluster - NGS data analysis using NeLS Galaxy https://galaxy-uib.bioinfo.no/ - How to use the NeLS portal https://nels.bioinfo.no/ for Data Management in your project - How to use StoreBioInfo https://storebioinfo.norstore.no/ for Data Management in your project If you have a specific question you would like to get help with during the workshop, kindly notify us ahead, so we may be prepared. Also, if you have wishes for topics to discuss in plenum for this, and also future workshops, please let us know. We have in the works an introduction to NeLS and Galaxy for students and researchers new to bioinformatics so if you have or know people that would be interested in taking part please watch this space for more information. 2019-09-06 09:00:00 UTC 2019-09-06 12:00:00 UTC ELIXIR Norway Meeting Room 505O2, CBU, Høyteknologisenteret 5th floor, Thormøhlens Gate 55A, Bergen, Norway Meeting Room 505O2, CBU, Høyteknologisenteret 5th floor, Thormøhlens Gate 55A Bergen Norway University of Bergen david.dolan@uib.no [] [] workshops_and_courses [] Hands-onNeLSGalaxydata managementNGS analysis
  • ELIXIR Norway All Hands Meeting

    22 - 24 October 2019

    Oslo, Norway

    Elixir node event
    ELIXIR Norway All Hands Meeting https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2019 Yearly gathering of all hands involved in ELIXIR Norway, including our SAC and stakeholder panel. Registration here by 22 September: https://forms.gle/hprhrTnthstT46E37 Schedule: 22 October 0900 - 23 October 1200: Pre-meeting on workflows and data management (WP4) 23 October 1200 - 24 October 1300: ELIXIR Norway all hands meeting (All) 24 October 1300 - 25 October 1300: Meeting with SAC and stakeholders (node leaders, WP leaders, coordinators 25 October 1300 - 25 October 1600: Board meeting (Head of Node, Node coordinator) 2019-10-22 09:00:00 UTC 2019-10-24 13:00:00 UTC ELIXIR Norway Thon Hotel Opera, 4, Dronning Eufemias gate, Oslo, Norway Thon Hotel Opera, 4, Dronning Eufemias gate Oslo Norway [] christine.stansberg@uib.no [] ELIXIR Norway staffELIXIR Norway SACELIXIR Norway stakeholder panel meetings_and_conferences [] []
  • ELIXIR Norway: Hands-on bioinformatics NeLS workshop

    26 November 2019

    Tromsø, Norway

    Elixir node event
    ELIXIR Norway: Hands-on bioinformatics NeLS workshop https://tess.elixir-europe.org/events/elixir-norway-hands-on-bioinformatics-nels-workshop We are pleased to announce the second hands-on bioinformatics NeLS workshop organised in Tromsø by [ELIXIR Norway](https://www.elixir-norway.org/). The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences - [NeLS](nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in Galaxy. More specifically, we will go through how you can store data in NeLS and upload it directly into Galaxy. We will also construct and run a complete sequence analysis workflow for taxonomic profiling on a metagenomic sample. There are no requirements for programming skills or experience using the command line, as Galaxy provides a web interface for running analysis. 2019-11-26 09:00:00 UTC 2019-11-26 15:00:00 UTC ELIXIR Norway University of Tromsø, Medisin og helsefagbygget (MH øst): Datarom (U7.110), Tromsø, Norway University of Tromsø, Medisin og helsefagbygget (MH øst): Datarom (U7.110) Tromsø Tromsø Norway 9019 Bioinformatics University of Tromsø ELIXIR Norway life scientistsdata managers 20 workshops_and_courses by_invitation bioinformaticsNeLSGalaxyEeLPeLearning
  • ELIXIR Norway: Workshop in Data Management for Life Science projects (21 February 2020)

    21 February 2020

    Tromsø, Norway

    Elixir node event
    ELIXIR Norway: Workshop in Data Management for Life Science projects (21 February 2020) https://tess.elixir-europe.org/events/elixir-norway-workshop-in-data-management-for-life-science-projects The topic of the workshop is how to generate a data management plan for a research project that will meet the requirements of the funding organisations. The intended audience are researchers (PhD candidates, post-doctoral fellows, researchers, associate professors, professors) who are planning to submit a grant application for a research project. You will set up a data management plan for your project using the **ELIXIR Norway Data Steward Wizard (DSW) tool**. DSW is more flexible and provides more domain specific templates than the easyDMP offered by Uninett/Sigma2. **Course content:** -Requirements from the funding bodies and legal requirements -Licensing of data, biological material and software -Information on national and local storage infrastructures -Relevant deposition repositories (data archives) -Hands on training and assistance to generate a data management plan **Requirements:** -Bring your laptop -Optionally you can also bring your research project (if you have one) **Teachers:** -Korbinian Bösl -Erik Hjerde -Nils Peder Willassen 2020-02-21 09:00:00 UTC 2020-02-21 15:30:00 UTC ELIXIR Norway University of Tromsø, Tromsø, Norway University of Tromsø Tromsø Norway 9019 Data quality management University of Tromsø ELIXIR Norway PhD candidatesPost-Doctoral FellowsResearchersAssociate ProfessorsProfessorsdata managers workshops_and_courses registration_of_interest data stewardship DSWdata managementlife sciencesData management planeLearningEeLP
  • Data Management Planning workshop for Life Science Projects (4 March 2020)

    4 March 2020

    Bergen, Norway

    Elixir node event
    Data Management Planning workshop for Life Science Projects (4 March 2020) https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects We are pleased to announce the Data Management planning workshop for Life Scientists organised in Bergen by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and [UiB library](https://www.uib.no/en/ub). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) who are planning to submit a grant application for a research project. Max. number of participants is 30. In this course we will cover how to generate a data management plan for a Life Science research project, which will meet the requirements of the funding organisations. ## Course content: ##### 0900 - 0915 Introduction ##### 0915 - 0945 Requirements from institutions & funding bodies * H2020/ERC * Research Council Norway ##### 0945 - 1015 About legal requirements * Health Research Act * Personal Data Act ##### 1015 - 1030 Short break ##### 1030 - 1115 Licensing of data, biological material and software ##### 1115 - 1200 Information on national and local storage infrastructures * NeLS/StoreBioInfo * NIRD * TSD * UiB Computing & Storage resources * SAFE ##### 1200 - 1230 Lunch ##### 1230 - 1315 Relevant deposition repositories/ data archives * domain specific archives (ELIXIR/EMBL-EBI, NCBI) * NIRD archive * UiB Open Research Data/ DataverseNO * NSD ##### 1315 - 1330 Short break ##### 1330 - 1600 Hands on training and assistance to generate a data management plan ## Requirements: Bring your own laptop and your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org) using a structured and detailed questionnaire with references to relevant resources. #### [Register](https://skjemaker.app.uib.no/view.php?id=7921185) before 27th of February 2020 2020-03-04 09:00:00 UTC 2020-03-04 16:00:00 UTC ELIXIR Norway Lars Hilles gate 30, UiB Learning Lab Store læringsrom, http://bit.ly/2RDl0hX, Bergen, Norway Lars Hilles gate 30, UiB Learning Lab Store læringsrom, http://bit.ly/2RDl0hX Bergen Norway 5008 Open science FAIR data Data management Data submission, annotation, and curation University of Bergen Beate Krøvel Humberset, Kjersti Hasle Enerstvedt and Korbinian Bösl Centre for Digital Life NorwayELIXIR-CONVERGE PhD candidatePostdoctoral researcherProfessorResearcherdata steward / data managerdata managerSenior scientist/ Principal investigatorlife sciences 30 workshops_and_courses first_come_first_served data management planNeLSTSDmetadatasensitivedata publicationdata protectionstorageidentifiersDMPlicensingCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planData management planning
  • Data Management Planning workshop for Life Science Projects

    11 March 2020

    Ås, Norway

    Elixir node event
    Data Management Planning workshop for Life Science Projects https://tess.elixir-europe.org/events/life-science-data-managment-planning-workshop We are pleased to announce the Data Management planning workshop for Life Scientists organised in Ås by [ELIXIR Norway](https://www.elixir-norway.org/) and [Digital Life Norway](https://digitallifenorway.org/). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Max. number of participants is 20. The topic is on how you can generate a data management plan for a Life Science research project that will meet the requirements of the funding organisations. ## Course content: ##### 0900 - 0945 Requirements from the funding bodies * NMBU * H2020/ERC * Research Council Norway ##### 0945 - 1015 About legal requirements * Health Research Act * Personal Data Act ##### 1015 - 1030 Short break ##### 1030 - 1115 Licensing of data, biological material and software ##### 1115 - 1200 Information on national and local storage infrastructures * NeLS/StoreBioInfo * NIRD * TSD * NMBU w: drive ##### 1200 - 1230 Lunch ##### 1230 - 1315 Relevant deposition repositories/ data archives * domain specific archives * NIRD archive * NMBU Open Research Data/ DataverseNO ##### 1315 - 1330 Short break ##### 1330 - 1600 Hands on training and assistance to generate a data management plan ## Requirements: Bring your own laptop and your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org) using a structured and detailed questionnaire with references to relevant resources. #### [Register](https://skjemaker.app.uib.no/view.php?id=7883809) before 01 March 2020 2020-03-11 09:00:00 UTC 2020-03-11 16:00:00 UTC ELIXIR Norway Universitetstunet, Ås, Norway Universitetstunet Ås Norway 1433 Data management Norwegian University of Life Sciences Solveig Fossum-Raunehaug, Korbinian Bösl, Thu Hien To Centre for Digital Life Norway PhD studentsPost DocsResearchersProfessors 20 workshops_and_courses first_come_first_served DMPData management plandata management
  • ELIXIR Norway All Hands Meeting 2020

    21 - 23 October 2020

    Elixir node event
    ELIXIR Norway All Hands Meeting 2020 https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2020 Yearly gathering of all hands involved in ELIXIR Norway, including our SAC and stakeholder panel. This year's meeting will be all digital. Registration here by 2 October: https://forms.gle/hprhrTnthstT46E37 2020-10-21 09:00:00 UTC 2020-10-23 16:00:00 UTC ELIXIR Norway Digital, Trondheim, Norway Digital Trondheim Norway [] christine.stansberg@uib.no [] [] meetings_and_conferences [] []
  • Data Management Planning workshop for Life Science Projects - Trondheim

    30 November - 1 December 2020

    Elixir node event
    Data Management Planning workshop for Life Science Projects - Trondheim https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-4e39d168-ea35-4850-9710-2a59d6a8548d We are pleased to announce the Data Management planning workshop for Life Scientists organised in Trondheim by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and [Research Data@NTNU](https://innsida.ntnu.no/researchdata). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Max. number of participants is 35. How-to generate a data management plan for a Life Science research project that will meet the requirements of the funding organisations? [Ingrid Heggland](https://www.ntnu.edu/employees/ingrid.heggland) (ResearchData@NTNU), [Ane M Gabrielsen](https://www.ntnu.no/ansatte/ane.gabrielsen) (ResearchData@NTNU), [Heine Skipenes](https://www.ntnu.no/ansatte/heine.skipenes) (Research IT NTNU), [Anne Heidi Skogholt](https://www.ntnu.edu/employees/anne.heidi.skogholt) (NTNU/HUNT-Cloud), [Kjersti Rise](https://www.ntnu.edu/employees/anne.heidi.skogholt) (NTNU/ELIXIR-Norway) and [Korbinian Bösl](https://www.uib.no/en/persons/Korbinian.Boesl) (UiB/ELIXIR-Norway/Centre for Digital Life Norway) ## Course content: #### 30.11.2020 ##### 0900 - 0915 Introduction ##### 0915 - 0945 Requirements from institutions & funding bodies NTNU H2020/ERC Research Council Norway ##### 0945 - 1015 Information on national and local storage infrastructures NeLS/StoreBioInfo NIRD NTNU Computing & Storage resources TSD HUNT-Cloud NICE-1 ##### 1015 - 1030 Short break ##### 1030 - 1230 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) NIRD archive NTNU Open Research Data/ DataverseNO NSD #### 1.12.2020 ##### 0900 - 1000 GDPR and other legal requirements for research on humans Health Research Act Personal Data Act ##### 1000 - 1015 Short break ##### 1015 - 1045 Licensing of data, biological material and software ##### 1045 - 1300 Hands on training and assistance to generate a data management plan #### Requirements: Join us online and bring your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org/dashboard) using a structured and detailed questionnaire with references to relevant resources. [Register before 25 November 2020](https://skjemaker.app.uib.no/view.php?id=9329496) 2020-11-30 09:00:00 UTC 2020-12-01 13:00:00 UTC ELIXIR Norway Data management Data security Data submission, annotation, and curation Norwegian University of Science and Technology korbinian.bosl@uib.no Centre for Digital Life Norway PhD studentsPost DocsAll postgraduatesProfessors 35 workshops_and_courses first_come_first_served DMPData management plandata management
  • Data Management Planning workshop for Life Science Projects - Oslo

    10 - 11 December 2020

    Elixir node event
    Data Management Planning workshop for Life Science Projects - Oslo https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-oslo We are pleased to announce the Data Management planning workshop for Life Scientists organised in Oslo by ELIXIR Norway, Digital Life Norway, USIT and UiO Research Data team. The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Max. number of participants is 35. Looking forward to see you at the workshop, Elin Stangeland (UiO Research Data team), Lars Soligard (UiO USIT), Gard O Sundby Thomassen (UiO USIT), Federico Bianchini (UiO/ELIXIR-Norway) and Korbinian Bösl (UiB/ELIXIR-Norway/Centre for Digital Life Norway) 10.12.2020 0900 - 0915 Introduction 0915 - 0945 Requirements from institutions & funding bodies UiO H2020/ERC Research Council Norway 0945 - 1015 Information on national and local storage infrastructures NeLS/StoreBioInfo NIRD UiO Computing & Storage resources TSD 1 015 - 1030 Short break 1030 - 1230 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) NIRD archive NSD 11.12.2020 0900 - 1000 GDPR and other legal requirements on research on humans Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Licensing of data, biological material and software 1045 - 1300 Hands on training and assistance to generate a data management plan Requirements: Join us online and bring your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the Data Steward Wizard tool using a structured and detailed questionnaire with references to relevant resources. [Register before 30 November 2020](https://skjemaker.app.uib.no/view.php?id=9329496) 2020-12-10 09:00:00 UTC 2020-12-11 13:00:00 UTC ELIXIR Norway Data management Data security Data submission, annotation, and curation University of Oslo korbinian.bosl@uib.no Centre for Digital Life Norway PhD studentsPost DocsAll postgraduatesProfessors 35 workshops_and_courses first_come_first_served DMPData management planData management plan
  • Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

    1 March 2021

    Using the Norwegian e-infrastructure for Life Science and usegalaxy.no https://tess.elixir-europe.org/events/using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxy-no-dcfe56d1-ee5e-4548-8f0e-aeda0d09c2e8 Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. 2021-03-01 09:00:00 UTC 2021-03-01 16:00:00 UTC ELIXIR Norway University of BergenUniversity of TromsøUniversity of OsloNorwegian University of Science and TechnologyNorwegian University of Life Sciences Erik Hjerde [] PhD studentsResearcherspostdoctoral researchersprinciple investigators 60 workshops_and_courses first_come_first_served Data analysisData storageData transferdata sharing
  • Data Management Planning workshop for Life Science Projects - Ås

    9 - 10 March 2021

    Elixir node event
    Data Management Planning workshop for Life Science Projects - Ås https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-as We are pleased to announce the Data Management planning workshop for Life Scientists organised in Ås by ELIXIR Norway, Digital Life Norway and the NMBU Research Support Office. The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Max. number of participants is 35. How-to generate a data management plan for a Life Science research project that will meet the requirements of the funding organisations? Looking forward to see you at the workshop, Solveig Fossum-Raunehaug (NMBU Research Support Office) and Korbinian Bösl (UiB/ELIXIR-Norway/Centre for Digital Life Norway) 09.03.2021 0900 - 0915 Introduction 0915 - 0945 Requirements from institutions & funding bodies NMBU H2020/ERC Research Council Norway 0945 - 1015 Information on national and local storage infrastructures NMBU Storage resources NeLS/StoreBioInfo NIRD TSD 1015 - 1030 Short break 1030 - 1230 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) NMBU Open Research Data/Dataverse NO NIRD archive NSD 10.03.2021 0900 - 1000 Key legal requirements for research in the GDPR and Health research act Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Licensing of data, biological material and software 1045 - 1300 Hands on training and assistance to generate a data management plan Requirements: Join us online and bring your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the Data Steward Wizard tool using a structured and detailed questionnaire with references to relevant resources. Register before 2nd of March 2021 2021-03-09 09:00:00 UTC 2021-03-10 13:00:00 UTC ELIXIR Norway Data submission, annotation, and curation Data security Data management Norwegian University of Life Sciences korbinian.bosl@uib.no Centre for Digital Life Norway PhD studentsPost DocsProfessorsAll postgraduates 35 workshops_and_courses first_come_first_served DMPData management plan
  • Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

    23 March 2021

    Using the Norwegian e-infrastructure for Life Science and usegalaxy.no https://tess.elixir-europe.org/events/using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxy-no-a8253e2e-62c7-4d5b-acb9-14fe349a2f3c 2021-03-23 09:00:00 UTC 2021-03-23 16:00:00 UTC ELIXIR Norway [] [] [] workshops_and_courses [] []
  • Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

    7 - 8 April 2021

    Using the Norwegian e-infrastructure for Life Science and usegalaxy.no https://tess.elixir-europe.org/events/using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxy-no-02ad8ee0-c347-4999-971c-b73617eba742 2021-04-07 09:00:00 UTC 2021-04-08 00:00:00 UTC ELIXIR Norway [] ELIXIR Norway [] [] workshops_and_courses [] []
  • Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

    13 - 14 April 2021

    Using the Norwegian e-infrastructure for Life Science and usegalaxy.no https://tess.elixir-europe.org/events/using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxy-no-b926a28d-73c6-4f7e-85ed-f22646bc2102 2021-04-13 09:00:00 UTC 2021-04-14 00:00:00 UTC ELIXIR Norway [] ELIXIR Norway [] [] workshops_and_courses [] []
  • Data Management Planning workshop for Life Science Projects - Bergen (21-22 April 2021)

    21 - 22 April 2021

    Elixir node event
    Data Management Planning workshop for Life Science Projects - Bergen (21-22 April 2021) https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-bergen We are pleased to announce the Data Management planning workshop for Life Scientists in Bergen by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and the [UiB University Library Research Data team](https://www.uib.no/ub/110811/forskingsdata-og-datahandtering). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Maximum number of participants: 40. Looking forward to see you at the workshop, [Kjersti Hasle Enerstvedt](https://www.uib.no/en/persons/Kjersti.Hasle.Enerstvedt) (UiB University Library Research Data team), [Jenny Ostrop](https://www.uib.no/en/persons/Jenny.Ostrop) (UiB University Library Research Data team),  [Tore Linde](https://www.uib.no/en/persons/Tore.Andre.Linde) (SAFE/UiB IT divison),  [Siri Kallhovd](https://www.uib.no/en/persons/Siri.Kallhovd) (UiB/Metacenter/ELIXIR-Norway), [Janecke Veim](https://www.uib.no/personer/Janecke.Helene.Veim) (Privacy Officer UiB) and [Korbinian Bösl](https://www.uib.no/en/persons/Korbinian.Boesl) (UiB/ELIXIR-Norway/Centre for Digital Life Norway) ### 21.04.2021 0900 - 0915 Introduction 0915 - 0945 Requirements from institutions & funding bodies UiB H2020/ERC Research Council Norway 0945 - 1015 Information on national and local storage infrastructures UiB Storage resources NeLS/StoreBioInfo SAFE NIRD TSD 1015 - 1030 Short break 1030 - 1230 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) UiB Open Research Data/Dataverse NO NIRD archive NSD B2SHARE ### 22.04.2021 0900 - 1000 Key legal requirements for research in the GDPR and Health research act Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Licensing of data, biological material and software 1045 - 1300 Hands on training and assistance to generate a data management plan ### Requirements: Join us online and bring your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Stewardship Wizard](https://elixir-no.ds-wizard.org/) tool using a structured and detailed questionnaire with references to relevant resources. Register [here](https://nettskjema.no/a/195116) before 18th of April 2021 [This event on digitallifenorway.org](https://www.digitallifenorway.org/services/data-management/events/-data-management-planning-workshop-for-life-scienc.html) 2021-04-21 09:00:00 UTC 2021-04-22 13:00:00 UTC ELIXIR Norway Data management University of Bergen korbinian.bosl@uib.no Centre for Digital Life Norway All postgraduatesPhD studentsPost DocsResearchersProfessorsSenior scientist/ Principal investigatorLife sciencesdata steward / data managerdata manager 40 workshops_and_courses first_come_first_served Data management planningDMPData management planNeLSTSDmetadatasensitivedata publicationstorageIdentifiersdata protectionCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planCompliance
  • Data Management Planning workshop for new Life Science Projects (15-16 June 2021)

    15 - 16 June 2021

    Elixir node event
    Data Management Planning workshop for new Life Science Projects (15-16 June 2021) https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-recently-funded-from-the-rcn We are pleased to announce the Data Management planning workshop for Life Scientists in Norway by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and the University Research Data teams. The Norwegian Research Council (RCN) will [announce](https://www.forskningsradet.no/nyheter/2021/februarsoknadene-i-rute/?utm_campaign=21-04-2021&utm_medium=email&utm_source=apsis) the research projects that will receive fundings in June. All projects that receive funding from the RCN are required to submit a data management plan as soon as possible after the contract with the RCN has been signed. This workshop focuses on how-to generate a data management plan for a Life Science research project that will meet the requirements of the RCN.   We would like to invite researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) in existing and upcoming Life Science project to develop their DMP in this workshop. Maximum number of participants: 45   ### 15.06.2021 0830 - 0900 Login support 0900 - 0915 Introduction 0915 - 0930 Requirements from the RCN 0930 - 1015 Parallel session Local recommendations and storage infrastructures Institutional DMP guidelines 1015 - 1030 Short break 1030 - 1100 Introduction DSW 1100 - 1120 Information on national storage infrastructures NeLS/StoreBioInfo NIRD TSD 1120 - 1135 Short break 1135 - 1230 Persistent identifiers, Controlled Vocabularies & Ontologies   ### 16.06.2021 0900 - 1000 Key legal requirements for research in the GDPR and Health research act Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) Dataverse NO EGA NIRD archive NSD 1045 - 1100 Short break 1100 - 1115 Licensing of data, biological material and software 1115 - 1300 Hands on training and assistance to generate a data management plan Requirements: Join us online and bring your project proposal . You will get the opportunity to set up a data management plan for your project with help of the Data Stewardship Wizard tool using a structured and detailed questionnaire with references to relevant resources. Looking forward to see you at the workshop. [Register here](https://nettskjema.no/a/dmp-june) by 10th of June 2021 2021-06-15 09:00:00 UTC 2021-06-16 13:00:00 UTC ELIXIR Norway Data management [] korbinian.bosl@uib.no Centre for Digital Life Norway PhD candidatePostdoctoral researcherProfessorResearchersdata steward / data managerdata managerSenior scientist/ Principal investigatorLife sciences 45 workshops_and_courses first_come_first_served DMPData management planRDMNeLSTSDmetadatasensitivedata publicationdata protectionstorageIdentifierslicensingCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planData management planning
  • Data Management Planning workshop for Life Science Projects (7-8 September 2021)

    7 - 8 September 2021

    Elixir node event
    Data Management Planning workshop for Life Science Projects (7-8 September 2021) https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-bc617aae-e700-46c3-b683-2001432aaa86 We are pleased to announce the Data Management planning workshop for Life Scientists in Norway by ELIXIR Norway and Digital Life Norway. All projects that receive funding from the Norwegian RCN are required to submit a data management plan as soon as possible after the contract with the RCN has been signed. All Norwegian universities now also require a DMP for all projects. This workshop focuses on how-to generate a data management plan for a Life Science research project that will meet the requirements of the RCN. We would like to invite researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) in existing and upcoming Life Science projects to develop their DMP in this workshop. Maximum number of participants: 45 The workshop will take place if there is at least 10 participants 07.09.2021 0830 - 0900 Login support 0900 - 0915 Introduction 0915 - 0930 Requirements from the RCN 0930 - 1000 Parallel session: Local recommendations & storage infrastructures Institutional DMP guidelines 1000 - 1015 Short break 1015 - 1100 Introduction DSW 1100 - 1120 Information on national storage infrastructures NeLS/StoreBioInfo NIRD TSD 1120 - 1135 Short break 1135 - 1230 Persistent identifiers, Controlled Vocabularies & Ontologies 08.09.2021 0900 - 1000 Key legal requirements for research in the GDPR and Health research act Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) Dataverse NO EGA NIRD archive NSD 1045 - 1100 Short break 1100 - 1115 Licensing of data, biological material and software 1115 - 1300 Hands on training and assistance to generate a data management plan Requirements: Join us online and bring your project proposal . You will get the opportunity to set up a data management plan for your project with help of the Data Stewardship Wizard tool using a structured and detailed questionnaire with references to relevant resources. Looking forward to see you at the workshop. Register [here](https://nettskjema.no/a/dmp-sept) by 1st of September 2021 2021-09-07 09:00:00 UTC 2021-09-08 13:00:00 UTC ELIXIR Norway Data management [] korbinian.bosl@uib.no Centre for Digital Life NorwayELIXIR Converge PhD candidateProfessorspostdoctoral researchersdata stewardsResearchersLife sciencesSenior scientist/ Principal investigatordata steward / data manager 45 workshops_and_courses first_come_first_served DMPData management planRDMNeLSTSDsensitivedata protectionIdentifierslicensingCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planstoragemetadatadata publication
  • 3DAROC21 3C-based data analysis and 3D reconstruction of chromatin folding

    4 - 6 October 2021

    3DAROC21 3C-based data analysis and 3D reconstruction of chromatin folding https://tess.elixir-europe.org/events/3daroc21-3c-based-data-analysis-and-3d-reconstruction-of-chromatin-folding 3C-based methods, such as Hi-C, produce a huge amount of raw data as pairs of DNA reads that are in close spatial proximity in the cell nucleus. Overall, those interaction matrices have been used to study how the genome folds within the nucleus, which is one of the most fascinating problems in modern biology. The rigorous analysis of those paired-reads using computational tools has been essential to fully exploit the experimental technique, and to study how the genome is folded in space. Currently, there is a clear expansion on the wealth of data on genome structure with the availability of many datasets of Hi-C experiments down to 1Kb resolution (see for example: http://hic.umassmed.edu/welcome/welcome.php or http://www.aidenlab.org/data.html). In this course, participants will learn to use TADbit, a software designed and developed to manage all dimensionalities of the Hi-C data: 1D - Map paired-end sequences to generate Hi-C interaction matrices 2D - Normalize matrices and identify constitutive domains (TADs, compartments) 3D - Generate populations of structures which satisfy the Hi-C interaction matrices 4D - Compare samples at different time points Participants can bring specific biological questions and/or their own 3C-based data to analyze during the course. At the end of the course, participants will be familiar with the TADbit software and will be able to fully analyze Hi-C data. Although the TADbit software is central in this course, alternative software will be discussed for each part of the analysis. 2021-10-04 09:00:00 UTC 2021-10-06 17:00:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência bicourses@igc.gulbenkian.pt Oeiras Valley experimental researchers and bioinformaticians at the graduate and post-graduate levels 20 workshops_and_courses registration_of_interest TADbit
  • ELIXIR Norway All hands meeting 2021

    19 - 21 October 2021

    Bergen, Norway

    ELIXIR Norway All hands meeting 2021 https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2021 Yearly gathering of all hands involved in ELIXIR Norway, including our SAC and stakeholder panel. Registration is now open! Secure your seat here by 10 September: https://forms.gle/5BYX9L18ttGM8kGk8 2021-10-19 12:00:00 UTC 2021-10-21 16:00:00 UTC ELIXIR Norway Clarion Hotel Bergen Airport, Bergen, Norway Clarion Hotel Bergen Airport Bergen Norway [] [] [] meetings_and_conferences [] []
  • PO21 Precision Oncology

    25 - 29 October 2021

    Oeiras, Portugal

    Elixir node event
    PO21 Precision Oncology https://tess.elixir-europe.org/events/po21-precision-oncology Precision Oncology (PO) is already revolutionizing healthcare and will play a dominant role in the future of cancer therapy. PO integrates tumor multi-omic profiles and data that reflect the course of the disease, lifestyle and environment to guide clinical decisions during cancer patient journey such as prevention, diagnosis and treatment. Bioinformatics analyses are essential to identify patients who will benefit from treatment based on their molecular profile, and to tailor chemotherapeutic regimens accordingly. The aim of the course is to present a complete computational pipeline for the analysis and interpretation of Next-Generation Sequencing (NGS) data such as exome sequencing or targeted panels that are commonly used in the clinic. We will address the implementation of large-scale genomic sequencing in clinical practice and the recently developed computational strategies for the analysis of NGS data with a particular emphasis on the interpretation of the results, selection of biomarkers of drug response and afford opportunities to match therapies with the characteristics of the individual patient's tumor. Exercises and case studies focused on cancer will be used to illustrate the principles of how genetics influence led to refining diagnoses and personalized treatment of cancer disease. Although focused on cancer, some of the principles and steps could be extrapolated to other complex diseases. 2021-10-25 09:30:00 UTC 2021-10-29 18:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Oeiras Portugal 2780-156 Oncology IGC - Instituto Gulbenkian de Ciência Pedro L Fernandes, Training Coordinator, pfern@igc.gubenkian.pt Oeiras Valley healthcare professionals Bioinformaticians 14 workshops_and_courses [] Clinical oncologyVariant callingDrug Targetting
  • AM21 Applied Metagenomics

    2 - 5 November 2021

    Oeiras, Portugal

    Elixir node event
    AM21 Applied Metagenomics https://tess.elixir-europe.org/events/am21-applied-metagenomics This course will give a comprehensive introduction to the research field of metagenomics. It will cover the basic concepts of microbiome analysis of shotgun metagenomic data using state of the art bioinformatics (amplicon sequencing will not be covered). The analysis methods that are being introduced are generic for all types of microbiomes, but we will be using data from the human microbiome as showcases. The course will start with the main preprocessing steps of raw sequence data, before various downstream analysis will be covered separately. These include taxonomic analysis, assembly, binning, and finally functional analysis with focus on antibiotic resistance genes. The theoretical part for each topic will be introduced via lectures, followed by practical hands-on exercises. 2021-11-02 09:30:00 UTC 2021-11-05 18:00:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Oeiras Portugal 2780-156 Metagenomic sequencing Metagenomics IGC - Instituto Gulbenkian de Ciência Pedro L. Fernandes, Training Coordinator, pfern@igc.gulbenkian.pt Oeiras Valley bioinformaticiansMicrobiologistsDrug resistance 10 [] [] Metagenomics
  • PSLS21 - Practical Statistics for the Life Sciences 2021

    8 - 12 November 2021

    Oeiras, Portugal

    Elixir node event
    PSLS21 - Practical Statistics for the Life Sciences 2021 https://tess.elixir-europe.org/events/psls21 This intermediate level course is one of our Foundations courses. It covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. The course positions applied statistics, starting from important aspects of experimental design and data exploration. We then move into statistical modeling and data analysis. We will focus on the link between linear regression and analysis of variance. Together, these methods contribute to the study of General Linear Models. The course also introduces the basics of non-parametric testing, and addresses categorical data analysis and logistic regression. The concepts and methods are exclusively introduced via case-studies in the life sciences. For every study we elaborate on a concrete research question and then provide a study design, which is followed by data exploration. Next, we will focus on how to model the data and elaborate on the link between model parameters and the subject matter research question. 2021-11-08 09:30:00 UTC 2021-11-12 18:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal Portugal 2780-156 Statistics and probability IGC - Instituto Gulbenkian de Ciência pfern@igc.gulbenkian.pt [] [] 17 workshops_and_courses registration_of_interest []
  • Software Carpentry

    15 - 18 November 2021

    Software Carpentry https://tess.elixir-europe.org/events/software-carpentry-4c7091f9-964e-4042-afd1-4d51e1e9c504 Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting. When: Nov 15-18, 2021 Requirements: Participants must have access to a computer with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below). Accessibility: We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you. Contact: Please email [marta.eide@uib.no](mailto:marta.eide@uib.no) for more information. Roles: To learn more about the roles at the workshop (who will be doing what), refer to our [Workshop FAQ](https://carpentries.org/workshop_faq/#what-are-the-roles-of-everyone-participating-in-a-workshop). Who can attend?: It is open to all PhD students, postdocs and researchers. Participants connected to one of the hosting initatives will be given priority, beyond this participants will be accepted based on the order of sign-up. #### Registration Please register [here](https://nettskjema.no/a/222739) before the 3rd of November. 2021-11-15 08:30:00 UTC 2021-11-18 13:00:00 UTC ELIXIR Norway [] Centre for Digital Life Norway [] workshops_and_courses first_come_first_servedregistration_of_interest R-programmingShellGit
  • Machine Learning

    15 - 17 November 2021

    Oeiras, Portugal

    Elixir node event
    Machine Learning https://tess.elixir-europe.org/events/machine-learning With the rise in high-throughput sequencing technologies, the volume of omics data has grown exponentially in recent times and a major issue is to mine useful knowledge from these data which are also heterogeneous in nature. Machine learning (ML) is a discipline in which computers perform automated learning without being programmed explicitly and assist humans to make sense of large and complex data sets. The analysis of complex high-volume data is not trivial and classical tools cannot be used to explore their full potential. Machine learning can thus be very useful in mining large omics datasets to uncover new insights that can advance the field of bioinformatics. This 3 day course will introduce participants to the machine learning taxonomy and the applications of common machine learning algorithms to omics data. The course will cover the common methods being used to analyse different omics data sets by providing a practical context through the use of basic but widely used R libraries. The course will comprise a number of hands-on exercises and challenges where the participants will acquire a first understanding of the standard ML processes, as well as the practical skills in applying them on familiar problems and publicly available real-world data sets. Instructors: Vandrille Duchemin, University of Basel, CH Crhistian Cardona, University of Tuebingen, DE 2021-11-15 09:30:00 UTC 2021-11-17 18:00:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2780-156 Machine learning Instituto Gulbenkian de Ciência pfern@igc-gulbenkian.pt To register your interest, please send an e-mail to bicourses@igc.gulbenkian.pt with "Machine Learning" in the subject line UNTIL November 11th 2021, stating the reason why you would be interested in attending this course in a single paragraph. ELIXIR PhD Studentspost-docsScientistsstudents 17 workshops_and_courses registration_of_interest Machine Learning, Introductory, Novice / Entry-level, Supervised learning, Unsupervised learning, Principal Component Analysis, K-means, Hierarchical Clustering, Decision Trees, Random Forest, Regression
  • IBIP21 Integrative Biological Interpretation using Proteomics

    22 - 26 November 2021

    Oeiras, Portugal

    IBIP21 Integrative Biological Interpretation using Proteomics https://tess.elixir-europe.org/events/ibip21-integrative-biological-interpretation-using-proteomics Quantitative proteomics by mass spectrometry has become an essential tool for multi-omics studies aiming at answering important biological questions in a system-wide perspective. Proteomics data contain rich and deep information that can become challenging to extract, interpret, and interface with other experimental outcomes. This training course is aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments. We will focus on quality control from an end-user perspective, link to the underlying genomic context, multivariate analysis, protein complexes investigation, and compare different platforms for biological interpretation. 2021-11-22 09:30:00 UTC 2021-11-26 18:30:00 UTC Pedro Fernandes R. Q.ta Grande 6, 6, Rua Quinta Grande, Oeiras, Portugal R. Q.ta Grande 6, 6, Rua Quinta Grande Oeiras Portugal 2780-156 Instituto Gulbenkian de Ciência The Gulbenkian Training Programme in Bioinformatics Pedro L. Fernandes, Organiser Instituto Gulbenkian de Ciência Rua da Quinta Grande, 6 2780-156 OEIRAS Portugal Oeiras Valley ResearchersBiologists, Genomicists, Computer Scientistsbioinformaticians 20 [] registration_of_interest ProteomicsIntegrativeGenomicsMass Spectroscopy
  • Data Management Planning workshop for Life Science Projects (6.-7. December 2021)

    6 - 7 December 2021

    Elixir node event
    Data Management Planning workshop for Life Science Projects (6.-7. December 2021) https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-6-7-december-2021 We are pleased to announce the Data Management planning workshop for Life Scientists in Norway by ELIXIR Norway and Digital Life Norway. All projects that receive funding from the Norwegian RCN are required to submit a data management plan as soon as possible after the contract with the RCN has been signed. All Norwegian universities now also require a DMP for all projects. This workshop focuses on how-to generate a data management plan for a Life Science research project that will meet the requirements of the RCN. We would like to invite researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) in existing and upcoming Life Science projects to develop their DMP in this workshop. Maximum number of participants: 45 The workshop will take place if there is at least 10 participants 06.12.2021 0830 - 0900 Login support 0900 - 0915 Introduction 0915 - 0930 Requirements from the RCN 0930 - 1000 Parallel session: Local recommendations & storage infrastructures Institutional DMP guidelines 1000 - 1015 Short break 1015 - 1100 Introduction DSW 1100 - 1120 Information on national storage infrastructures NeLS/StoreBioInfo NIRD TSD 1120 - 1135 Short break 1135 - 1230 Persistent identifiers, Controlled Vocabularies & Ontologies 07.12.2021 0900 - 1000 Key legal requirements for research in the GDPR and Health research act Personal Data Act Health Research Act 1000 - 1015 Short break 1015 - 1045 Relevant deposition repositories/ data archives domain specific archives (ELIXIR/EMBL-EBI, NCBI) Dataverse NO EGA NIRD archive NSD 1045 - 1100 Short break 1100 - 1115 Licensing of data, biological material and software 1115 - 1300 Hands on training and assistance to generate a data management plan Requirements: Join us online and bring your project proposal . You will get the opportunity to set up a data management plan for your project with help of the Data Stewardship Wizard tool using a structured and detailed questionnaire with references to relevant resources. Looking forward to see you at the workshop. Register [here](https://nettskjema.no/a/dmp-sept) by 1st of September 2021 2021-12-06 09:00:00 UTC 2021-12-07 13:00:00 UTC ELIXIR Norway Data management [] korbinian.bosl@uib.no Centre for Digital Life NorwayELIXIR Converge PhD candidateProfessorspostdoctoral researchersdata stewardsResearchersLife sciencesSenior scientist/ Principal investigatordata steward / data managerAll postgraduates 45 workshops_and_courses first_come_first_served DMPData management planRDMNeLSTSDsensitivedata protectionIdentifiersIdentifiersCompliancedata life cycle - collectdata life cycle - reusedata life cycle - analysedata life cycle - processdata life cycle - preservedata life cycle - sharedata life cycle - planstoragemetadatadata publication
  • PSLS22 - Practical Statistics for the Life Sciences

    28 March - 1 April 2022

    Oeiras, Portugal

    Elixir node event
    PSLS22 - Practical Statistics for the Life Sciences https://tess.elixir-europe.org/events/psls22 This intermediate level course is one of our Foundations courses. It covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. The course positions applied statistics, starting from important aspects of experimental design and data exploration. We then move into statistical modeling and data analysis. We will focus on the link between linear regression and analysis of variance. Together, these methods contribute to the study of General Linear Models. The course also introduces the basics of non-parametric testing, and addresses categorical data analysis and logistic regression. The concepts and methods are exclusively introduced via case-studies in the life sciences. For every study we elaborate on a concrete research question and then provide a study design, which is followed by data exploration. Next, we will focus on how to model the data and elaborate on the link between model parameters and the subject matter research question. 2022-03-28 09:30:00 UTC 2022-04-01 18:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Portugal 2780-156 Statistics and probability Instituto Gulbenkian de Ciência bicourses@igc.gulbenkian.pt [] PhD studentspost-docsLife Science Researchers 20 workshops_and_courses [] data visualizationData analysisGeneral Linear Models

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