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555 events found
Organizer: ELIXIR Estonia or VIB Conferences or University of Cambridge
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Bioinformatics: R for molecular epidemiology of viruses
2 - 4 May 2013
Cambridge, United Kingdom
Bioinformatics: R for molecular epidemiology of viruses http://training.csx.cam.ac.uk/event/604279 https://tess.elixir-europe.org/events/bioinformatics-r-for-molecular-epidemiology-of-viruses 2013-05-02 00:00:00 UTC 2013-05-04 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Public health and epidemiology Bioinformatics [] [] [] workshops_and_courses [] [] -
Bioinformatics: Introduction to Phylogenetic Tree-Building
31 May - 1 June 2013
Cambridge, United Kingdom
Bioinformatics: Introduction to Phylogenetic Tree-Building http://training.csx.cam.ac.uk/event/629456 https://tess.elixir-europe.org/events/bioinformatics-introduction-to-phylogenetic-tree-building 2013-05-31 00:00:00 UTC 2013-06-01 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Bioinformatics: Advanced R Programming
20 June 2013
Cambridge, United Kingdom
Bioinformatics: Advanced R Programming http://training.csx.cam.ac.uk/event/564997 https://tess.elixir-europe.org/events/bioinformatics-advanced-r-programming 2013-06-20 00:00:00 UTC 2013-06-20 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Genomics in Medicine
21 June 2013
Cambridge, United Kingdom
Genomics in Medicine http://training.csx.cam.ac.uk/event/657973 https://tess.elixir-europe.org/events/genomics-in-medicine-4e33f556-4d63-4fe8-b5bf-2e62b41def47 2013-06-21 00:00:00 UTC 2013-06-21 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom [] [] [] workshops_and_courses [] [] -
Using the Ensembl Genome Browser
22 June 2013
Cambridge, United Kingdom
Using the Ensembl Genome Browser http://training.csx.cam.ac.uk/event/565106 https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser 2013-06-22 00:00:00 UTC 2013-06-22 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Bioinformatics: Analysing mapped NGS data with SeqMonk
6 July 2013
Cambridge, United Kingdom
Bioinformatics: Analysing mapped NGS data with SeqMonk http://training.csx.cam.ac.uk/event/659199 https://tess.elixir-europe.org/events/bioinformatics-analysing-mapped-ngs-data-with-seqmonk 2013-07-06 00:00:00 UTC 2013-07-06 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Bioinformatics: A Practical User Introduction
23 - 25 July 2013
Cambridge, United Kingdom
Bioinformatics: A Practical User Introduction http://training.csx.cam.ac.uk/event/650170 https://tess.elixir-europe.org/events/bioinformatics-a-practical-user-introduction 2013-07-23 00:00:00 UTC 2013-07-25 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Microarray Analysis with Bioconductor
29 - 31 August 2013
Cambridge, United Kingdom
Microarray Analysis with Bioconductor http://training.csx.cam.ac.uk/event/642742 https://tess.elixir-europe.org/events/microarray-analysis-with-bioconductor 2013-08-29 00:00:00 UTC 2013-08-31 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
Genome Annotation with Artemis
27 September 2013
Cambridge, United Kingdom
Genome Annotation with Artemis http://training.csx.cam.ac.uk/event/565131 https://tess.elixir-europe.org/events/genome-annotation-with-artemis 2013-09-27 00:00:00 UTC 2013-09-27 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Genomics Bioinformatics [] [] [] workshops_and_courses [] [] -
Multiple Sequence Alignment and Phylogenetics
19 - 20 December 2013
Cambridge, United Kingdom
Multiple Sequence Alignment and Phylogenetics http://training.csx.cam.ac.uk/event/564938 https://tess.elixir-europe.org/events/multiple-sequence-alignment-and-phylogenetics 2013-12-19 00:00:00 UTC 2013-12-20 00:00:00 UTC University of Cambridge Cambridge, United Kingdom Cambridge United Kingdom Bioinformatics [] [] [] workshops_and_courses [] [] -
An Introduction to Solving Biological Problems with R
16 - 17 February 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with R http://training.csx.cam.ac.uk/bioinformatics/event/1346838 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-a5bf1162-48ee-4baa-8664-c91ae02d3f46 This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The Course Web Site providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_gsls-rintro_2015.02.16-17_1346838&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=2015.02.16-17&CourseDuration=2&EventID=1346838).'' 2015-02-16 09:30:00 UTC 2015-02-17 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of Cambridge and InstitutionsGraduate studentsPostdocs and Staff members from all other external InstitutionsIndividual Course fees are required only from external participants not from Institutions workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with Python
19 - 20 February 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with Python http://training.csx.cam.ac.uk/bioinformatics/event/1346873 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python-2aea7672-3cdb-4034-b8b7-e4bffdc362f6 This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Python.php). The Course Web Site providing links to the course materials is [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python_gsls-python_2015.02.19-20_1346873&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python&CourseDate=2015.02.19-20&CourseDuration=2&EventID=1346873).'' 2015-02-19 09:30:00 UTC 2015-02-20 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Whole Exome Sequencing and RNA-sequence data analysis
23 - 25 February 2015
Cambridge, United Kingdom
Whole Exome Sequencing and RNA-sequence data analysis http://training.csx.cam.ac.uk/bioinformatics/event/1362148 https://tess.elixir-europe.org/events/whole-exome-sequencing-and-rna-sequence-data-analysis This course covers state-of-the-art tools and methods for NGS RNA-seq and exome variant data analysis, which are of major relevance in today's genomic and gene expression studies. It is oriented to experimental researchers, post-doctoral and PhD students who want to learn about the state-of-the-art of genomic variant and transcriptomics data analysis methodologies and carry out their own analysis. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Ximo.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Whole%20Exome%20Sequencing%20and%20RNA-sequence%20data%20analysis_gsls-ximo_2015.02.23-25_1362148&CourseName=Bioinformatics:%20Whole%20Exome%20Sequencing%20and%20RNA-sequence%20data%20analysis&CourseDate=2015.02.23-25&CourseDuration=3&EventID=1362148).'' 2015-02-23 09:30:00 UTC 2015-02-25 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Introduction to Galaxy: Data Manipulation and Visualisation
27 February 2015
Cambridge, United Kingdom
Introduction to Galaxy: Data Manipulation and Visualisation http://training.csx.cam.ac.uk/bioinformatics/event/1362281 https://tess.elixir-europe.org/events/introduction-to-galaxy-data-manipulation-and-visualisation-f2a53617-25ca-470f-ae1a-b77d033503cc Galaxy (http://galaxyproject.org/) is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses. This introductory course will cover Galaxy's basic functionality, simple data manipulation and visualization. This event is mostly targeted at first time users. Further information is available [from the course website](http://galaxycam.github.io/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Introduction%20to%20Galaxy%20-%20Data%20Manipulation%20and%20Visualisation_gsls-galaxy01_1362281_2015-02-27&CourseName=Bioinformatics:%20Introduction%20to%20Galaxy%20-%20Data%20Manipulation%20and%20Visualisation&CourseDate=2015-02-27&CourseDuration=1&EventID=1362281).'' 2015-02-27 09:30:00 UTC 2015-02-27 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with R
11 - 12 March 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with R http://training.csx.cam.ac.uk/bioinformatics/event/1346856 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-9cc6a2e6-7037-435e-ab48-bb43663b3608 This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The Course Web Site providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_gsls-rintro_2015.03.11-12_1346856&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=2015.03.11-12&CourseDuration=2&EventID=1346856).'' 2015-03-11 09:30:00 UTC 2015-03-12 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Analysis of mapped NGS data with SeqMonk
13 March 2015
Cambridge, United Kingdom
Analysis of mapped NGS data with SeqMonk http://training.csx.cam.ac.uk/bioinformatics/event/1349493 https://tess.elixir-europe.org/events/analysis-of-mapped-ngs-data-with-seqmonk SeqMonk is a graphical program for the visualisation and analysis of large mapped datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/SeqMonk.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Analysing%20mapped%20NGS%20data%20with%20SeqMonk_gsls-seqmonk_2015.03.13_1349493&CourseName=Bioinformatics:%20Analysing%20mapped%20NGS%20data%20with%20SeqMonk&CourseDate=2015.03.13&CourseDuration=1&EventID=1349493).'' 2015-03-13 09:30:00 UTC 2015-03-13 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC
16 March 2015
Cambridge, United Kingdom
EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC http://training.csx.cam.ac.uk/bioinformatics/event/1349118 https://tess.elixir-europe.org/events/embl-ebi-network-analysis-cytoscape-and-psicquic This session provides an introduction to Network Analysis using Cytoscape and PSICQUIC [from the European Bioinformatics Institute (EBI)]. It is aimed at biologists and computer scientists wanting to learn the basics of network analysis. Further information for this session is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Pablo.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Network%20Analysis%20-%20Cytoscape%20and%20PSICQUIC_gsls-ebinetworks_2015-03-16_1349118&CourseName=Bioinformatics:%20Network%20Analysis%20-%20Cytoscape%20and%20PSICQUIC&CourseDate=2015-03-16&CourseDuration=1&EventID=1349118).'' 2015-03-16 09:30:00 UTC 2015-03-16 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Next Generation Sequencing data analysis
17 - 20 March 2015
Cambridge, United Kingdom
Next Generation Sequencing data analysis http://training.csx.cam.ac.uk/bioinformatics/event/1353918 https://tess.elixir-europe.org/events/next-generation-sequencing-data-analysis-f3c2de3a-4f16-442a-9210-3e916e2b10bc This course provides an introduction to next generation sequencing (NGS) data analysis methodologies. Lectures will give insight into how biological knowledge can be generated from RNA-seq, ChIP-seq and DNA-seq experiments and illustrate different ways of analyzing such data. Practicals will consist of computer exercises that will enable the participants to apply statistical methods to the analysis of RNA-seq, ChIP-seq and DNA-seq data under the guidance of the lecturers and teaching assistants. It is aimed at researchers who are applying or planning to apply NGS technologies and bioinformatics methods in their research. The timetable for this event can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5eVNWU1FuTGJxbWs/view?usp=sharing). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Next%20Generation%20Sequencing%20data%20analysis_gsls-ngs_2015.03.17-20_1353918&CourseName=Bioinformatics:%20Next%20Generation%20Sequencing%20data%20analysis&CourseDate=2015.03.17-20&CourseDuration=4&EventID=1353918).'' 2015-03-17 09:00:00 UTC 2015-03-20 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Using the Ensembl Genome Browser
23 March 2015
Cambridge, United Kingdom
Using the Ensembl Genome Browser http://training.csx.cam.ac.uk/bioinformatics/event/1351263 https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-085dbd75-fa9c-4bf7-ab8d-b6257a1147ee [The Ensembl project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This one-day workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Using%20the%20Ensembl%20Genome%20Browser_gsls-ensbrow_2015.03.23_1351263&CourseName=Bioinformatics:%20Using%20the%20Ensembl%20Genome%20Browser&CourseDate=2015.03.23&CourseDuration=1&EventID=1351263).'' 2015-03-23 09:30:00 UTC 2015-03-23 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to MATLAB for biologists
24 - 25 March 2015
Cambridge, United Kingdom
An Introduction to MATLAB for biologists http://training.csx.cam.ac.uk/bioinformatics/event/1346918 https://tess.elixir-europe.org/events/an-introduction-to-matlab-for-biologists-150f2af2-70da-41eb-91bb-c635c024107d A two-day course designed to introduce MATLAB and some basic programming concepts. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/MATLAB.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20MATLAB_gsls-MATLAB_2015.03.24-25_1346918&CourseName=Bioinformatics:%20An%20Introduction%20to%20MATLAB&CourseDate=2015.03.24-25&CourseDuration=2&EventID=1346918).'' 2015-03-24 09:30:00 UTC 2015-03-25 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
R object-oriented programming and package development
31 March 2015
Cambridge, United Kingdom
R object-oriented programming and package development http://training.csx.cam.ac.uk/bioinformatics/event/1346911 https://tess.elixir-europe.org/events/r-object-oriented-programming-and-package-development-18108040-7a06-4fb1-848c-6e6277bd1d0e The course will present intermediate to advanced R programming using the object-oriented programming paradigm. It will cover how to document code and data to produce a fully functional R package. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Advanced.php). The Course Web Site providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/advancedR). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20R%20object-oriented%20programming%20and%20package%20development_gsls-radv_1346911_2015-03-31&CourseName=Bioinformatics:%20R%20object-oriented%20programming%20and%20package%20development&CourseDate=2015-03-31&CourseDuration=1&EventID=1346911).'' 2015-03-31 08:30:00 UTC 2015-03-31 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with R
1 - 2 April 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with R http://training.csx.cam.ac.uk/bioinformatics/event/1416288 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-fb93328d-9843-43f9-8a17-91527a4c64fb This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The Course Web Site providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_gsls-rintro_2015.04.01-02_1416288&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=2015.04.01-02&CourseDuration=2&EventID=1416288).'' 2015-04-01 08:30:00 UTC 2015-04-02 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Introduction to genome variation analysis using NGS
9 - 10 April 2015
Cambridge, United Kingdom
Introduction to genome variation analysis using NGS http://training.csx.cam.ac.uk/bioinformatics/event/1409340 https://tess.elixir-europe.org/events/introduction-to-genome-variation-analysis-using-ngs-3cec9083-9e10-467d-b5bd-1631f758fa47 This course provides an introduction to the analysis of genome sequence variation with next generation sequencing data (NGS), including: *an introduction to genetic variation as well as data formats and analysis workflows commonly used in NGS data analysis; *an overview of available analytical tools and discussion of their limitations; and *hands-on experience with common computational workflows for analysing genome sequence variation using bioinformatics and computational genomics approaches. A draft agenda can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5QWc1UlRDZEc1cXM/view?usp=sharing) Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Introduction%20to%20genome%20variation%20analysis%20using%20NGS_bioinfo-var_2015.04.9-10_1409340&CourseName=Introduction%20to%20genome%20variation%20analysis%20using%20NGS&CourseDate=2015.04.9-10&CourseDuration=2&EventID=1409340).'' 2015-04-09 08:30:00 UTC 2015-04-10 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with PERL
14 - 15 April 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with PERL http://training.csx.cam.ac.uk/bioinformatics/event/1346940 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-perl-0fc54a8b-c0da-46e0-9d1b-9e9a7f0219f5 This course is aimed at those new to programming and provides an introduction to programming using Perl. During this course you will learn the basics of the Perl programming language, including how to store data in Perl’s standard data structures such as arrays and hashes, and how to process data using loops, functions, and many of Perl’s built in operators. You will learn how to write and run your own Perl scripts and how to pass options and files to them. The course also covers sorting, regular expressions, references and multi-dimensional data structures. The course will be taught using the online [Learning Perl](http://sofiarobb.com/learning-perl-toc/) materials created by [Sofia Robb](http://stajich.bioinformatics.ucr.edu/members/sofia-robb) of the [University of California Riverside](http://www.ucr.edu/). The course website providing links to the course materials is [here](http://bit.ly/cambridgeperl). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20PERL_gsls-perlintro_2015.04.14-15_1346940&CourseName=Bioinformatics:%20Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20PERL&CourseDate=2015.04.14-15&CourseDuration=2&EventID=1346940).'' 2015-04-14 08:30:00 UTC 2015-04-15 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Protein Structure Modelling
16 - 17 April 2015
Cambridge, United Kingdom
Protein Structure Modelling http://training.csx.cam.ac.uk/bioinformatics/event/1346893 https://tess.elixir-europe.org/events/protein-structure-modelling This practical-based course will deal with all aspects of the prediction of protein structure, concentrating on the prediction of secondary structure, fold recognition and comparative modelling of structures. Computational aspects of protein structure determination, validation and analysis will be covered. The course will be a mixture of talks and guided practicals. Further information is available [here](http://ubio.bioinfo.cnio.es/Cursos/Cambridge2015/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Protein%20Structure%20Modelling_gsls-prostruct_2015-04-16-17_1346893&CourseName=Bioinformatics:%20Protein%20Structure%20Modelling&CourseDate=2015-04-16-17&CourseDuration=2&EventID=1346893).'' 2015-04-16 08:30:00 UTC 2015-04-17 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Image Analysis for Biologists
20 - 22 April 2015
Cambridge, United Kingdom
Image Analysis for Biologists http://training.csx.cam.ac.uk/bioinformatics/event/1372458 https://tess.elixir-europe.org/events/image-analysis-for-biologists-9d8300d6-cd80-4ccd-a945-6f71b19a624d *This course will focus on computational methods for analyzing cellular images and extracting quantitative data from them. *It is aimed at researchers who are applying or planning to apply image analysis in their research *On day 1 we will introduce principles of image processing and analysis, giving an overview of commonly used algorithms through a series of talks and practicals based around [Fiji](http://fiji.sc/Fiji), an extensible open source software package. *On day 2 we will then use Matlab as an environment for bioimage informatics, covering image segmentation and quantitation, interactive data visualization, basic statistical analysis and machine learning algorithms. [OME](https://www.openmicroscopy.org/site) software and data format standards for the storage and manipulation of biological microscopy data will also be presented. *On day 3 we will focus on how to use [CellProfiler](http://www.cellprofiler.org/), an open-source, freely-downloadable software package designed for large-scale, automated phenotypic image analysis. *A draft agenda can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5czFIZnRUNGlIaVk/view?usp=sharing). *This event is sponsored by the [Systems Microscopy NoE](http://www.systemsmicroscopy.eu/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Image%20Analysis%20for%20Biologists%20_2015.04.20-22_1372458&CourseName=Bioinformatics:%20Image%20Analysis%20for%20Biologists&CourseDate=2015.04.20-22&CourseDuration=3&EventID=1372458).'' 2015-04-20 08:30:00 UTC 2015-04-22 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Variant Analysis with GATK
23 - 24 April 2015
Cambridge, United Kingdom
Variant Analysis with GATK http://training.csx.cam.ac.uk/bioinformatics/event/1380452 https://tess.elixir-europe.org/events/variant-analysis-with-gatk-2aa6f7c8-24d5-4427-bb1c-cfb82494bb71 *This workshop will focus on the core steps involved in calling variants with the Broad’s [Genome Analysis Toolkit](https://www.broadinstitute.org/gatk/), using the “Best Practices” developed by the GATK team. *You will learn why each step is essential to the variant calling process, what are the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. Special attention will be given to the newest functionalities in GATK3, including joint discovery in cohorts and RNAseq analysis. *The workshop will last two days, with a day and a half of lectures (including many opportunities for Q&A) and one half day of hands-on training. *On the first day, we will explain the rationale, theory and real-life applications of our Best Practices for Variant Discovery in high-throughput sequencing data. *On the second day, in the morning we will cover additional topics such as the differences between whole genome vs. exome analysis, sequence data QC metrics, and how to apply GATK to non-model organisms. In the afternoon, we will hold a hands-on session in which attendees will learn to interact with the GATK tools and apply them effectively. *The lecture-based component of the workshop is aimed at a mixed audience of people who are new to GATK seeking an introductory course into the tools, or who are already GATK users seeking to improve their understanding of and proficiency with the tools. The hands-on component is aimed mainly at beginners who have basic familiarity with the command line environment. *A draft agenda can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5eWtiaWtFdnJRcEU/view?usp=sharing). * This event is sponsored by [eLife](http://elifesciences.org/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Variant%20Analysis%20with%20GATK%20_2015.04.23-24_1380452&CourseName=Bioinformatics:%20Variant%20Analysis%20with%20GATK&CourseDate=2015.04.23-24&CourseDuration=2&EventID=1380452).'' 2015-04-23 08:30:00 UTC 2015-04-24 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with R
28 - 29 April 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with R http://training.csx.cam.ac.uk/bioinformatics/event/1433298 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-54d99792-0190-4e56-8197-2b73bf03feeb This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The Course Web Site providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_gsls-rintro_2015.04.28-29_1433298&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=2015.04.28-29&CourseDuration=2&EventID=1433298).'' 2015-04-28 08:30:00 UTC 2015-04-29 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
An Introduction to Solving Biological Problems with Python
30 April - 1 May 2015
Cambridge, United Kingdom
An Introduction to Solving Biological Problems with Python http://training.csx.cam.ac.uk/bioinformatics/event/1429661 https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python-05d0112b-a06c-4607-abed-8946b5615428 This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Python.php). The Course Web Site providing links to the course materials is [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python_gsls-python_2015.04.30-05.01_1429661&CourseName=Bioinformatics:%20An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python&CourseDate=2015.04.30-05.01&CourseDuration=2&EventID=1429661).'' 2015-04-30 08:30:00 UTC 2015-05-01 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis with Jalview
11 - 13 May 2015
Cambridge, United Kingdom
Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis with Jalview http://training.csx.cam.ac.uk/bioinformatics/event/1442887 https://tess.elixir-europe.org/events/protein-and-rna-multiple-sequence-alignment-protein-secondary-structure-prediction-trees-sub-family-and-function-analysis-with-jalview Jalview hands-on training course is for anyone who works with sequence data and multiple sequence alignments from proteins, RNA and DNA. [Jalview](http://www.jalview.org) is free software for protein and nucleic acid sequence alignment generation, visualisation and analysis. It includes sophisticated editing options and provides a range of analysis tools to investigate the structure and function of macromolecules through a multiple window interface. For example, Jalview supports 8 popular methods for multiple sequence alignment, prediction of protein secondary structure by [JPred](http://www.compbio.dundee.ac.uk/jpred4) and disorder prediction by four methods. Jalview also has options to generate phylogenetic trees, and assess consensus and conservation across sequence families. Sequences, alignments and additional annotation can be accessed directly from public databases and journal-quality figures generated for publication. The course involves of a mixture of talks and hands-on exercises. Day 1 is an introduction to protein multiple sequence alignment editing and analysis with Jalview. Day 2 focuses on using Jalview for RNA sequence analysis, and also integrating cDNA and protein analysis and covers more advanced applications after lunch. Day 3 concentrates on protein secondary structure prediction with JPred version 4 as well as protein sub-family analysis to identify functionally important residues. There will be opportunities for attendees to get advice on analysis of their own sequence families. Further information, including some training videos, is also [available](http://www.jalview.org//training/training-courses/Protein-and-RNA-multiple-sequence-alignment-protein-secondary-structure). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Protein%20and%20RNA%20multiple%20sequence%20alignment%20and%20functional%20analysis%20with%20Jalview_gsls-jalview_2015.05.11-13_1442887&CourseName=Protein%20and%20RNA%20multiple%20sequence%20alignment%20and%20functional%20analysis%20with%20Jalview&CourseDate=2015.05.11-13&CourseDuration=3&EventID=1442887).'' 2015-05-11 08:30:00 UTC 2015-05-13 15:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
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