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  • Genome assembly and annotation course

    12 - 14 October 2016

    Prague, Czechia

    Elixir node event
    Genome assembly and annotation course https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course ELIXIR Genome assembly and annotation course, Oct 12-14 2016 at the IOCB, Prague, Czech Republic 2016-10-12 09:00:00 UTC 2016-10-14 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Genomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Introduction to Galaxy and the Genomics Virtual Laboratory

    4 May 2017

    Carlton, Australia

    Introduction to Galaxy and the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomics-virtual-laboratory Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy’s interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2017-05-04 09:30:00 UTC 2017-05-04 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] genomics
  • At The Forefront Of Plant Research

    15 - 16 June 2017

    Gent, Belgium

    Elixir node event
    At The Forefront Of Plant Research https://tess.elixir-europe.org/events/at-the-forefront-of-plant-research Understanding and exploiting plant life lies at the heart of human civilization. Not only do we rely on plants to feed a growing world population and to improve our standard of living, plants also play a pivotal role in providing a significant portion of our energy needs, and in fulfilling our demand for renewable industrial resources. It is expected that technological advances will further boost crop productivity and quality in a wider range of applications. In addition, new technologies will enable the development of agricultural practices that are in better harmony with the natural environment. The genomics revolution has been steering plant life sciences for more than a decade now. For that reason it is good to reflect and look ahead to which new opportunities are on the horizon. The aim of this conference is to unite leaders from a wide range of pioneering research topics, to give us a glimpse of where plant science will lead us to in the coming decade. 2017-06-15 08:00:00 UTC 2017-06-16 18:00:00 UTC VIB Conferences NV Zebrastraat, 32, Zebrastraat, Gent, Belgium NV Zebrastraat, 32, Zebrastraat Gent Oost-Vlaanderen Belgium 9000 Plant biology VIB conferences@vib.be [] Life Science Researchers 250 meetings_and_conferences [] plantbiologygenomics
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • Genome Annotation with Monica Munoz-Torres

    3 July - 10 May 2017

    James Cook University, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-e0429e7a-0897-4426-bb63-1136a2131375 2017-07-03 09:00:00 UTC 2017-05-10 17:00:00 UTC James Cook University Room 034-011C, James Cook University, Townsville Campus, James Cook University, Australia Room 034-011C, James Cook University, Townsville Campus James Cook University Australia Bioinformatics James Cook University ira.cooke@jcu.edu.au [] [] workshops_and_courses [] Bioinformaticsgenomics
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • An Introduction to Genomics with R

    18 July 2017

    Adelaide, Australia

    An Introduction to Genomics with R https://tess.elixir-europe.org/events/an-introduction-to-genomics-with-r 2017-07-18 09:00:00 UTC 2017-07-18 17:00:00 UTC University of Adelaide Room 422, Horace Lamb Building, The University of Adelaide, Adelaide, Australia Room 422, Horace Lamb Building, The University of Adelaide Adelaide SA Australia Bioinformatics University of Adelaide [] [] workshops_and_courses [] R-programminggenomics
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Genome assembly and annotation course 3

    23 - 27 October 2017

    Oeiras, Portugal

    Elixir node event
    Genome assembly and annotation course 3 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-3 ELIXIR Genome assembly and annotation course 3, Oct 23-27 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-10-23 09:00:00 UTC 2017-10-27 17:00:00 UTC ELIXIR PT, Instituto Gulbenkian Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Genomics Instituto Gulbenkian de Ciência [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomics AssemblyTrainingeLearningEeLP
  • Genome Annotation using Apollo

    21 November 2017

    Carlton, Australia

    Genome Annotation using Apollo https://tess.elixir-europe.org/events/genome-annotation-using-apollo This workshop will include a short background lecture on the fundamentals of gene prediction and genome annotation followed by a hands-on component where we will conduct manual curation exercises using Apollo. The workshop has been organised by EMBL-ABR and will be led by Dr Monica Munoz-Torres from Phoenix Bioinformatics who is an expert in genome annotation, current chair of the International Society for Biocuration Executive Committee, and former Project Manager of the Apollo Project. Monica will be joining us direct from the San Francisco Bay Area, and we will have locally trained trainers on hand at various EMBL-ABR Nodes around Australia to help and facilitate the workshop locally. 2017-11-21 11:00:00 UTC 2017-11-21 14:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Carlton, Australia 187 Grattan St, 187, Grattan Street Carlton Melbourne Australia Genomics Bioinformatics University of MelbourneUniversity of New South WalesUniversity of AdelaideJames Cook UniversityUniversity of QueenslandMonash University [] [] workshops_and_courses [] Annotationgenomicsbioinformatics
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
  • CESNET e-infrastructure workshop

    11 December 2017

    Prague, Czechia

    Elixir node event
    CESNET e-infrastructure workshop https://tess.elixir-europe.org/events/cesnet-e-infrastructure-workshop In Czech, CESNET, GEANT, DataCare, Metacentrum, HPC, ELIXIR, EDGAIN, SAGElab, Cloud computing 2017-12-11 08:30:00 UTC 2017-12-11 16:45:00 UTC CESNET Thákurova 550/1, 1, Thákurova, Prague, Czechia Thákurova 550/1, 1, Thákurova Prague Hlavní město Praha Czechia Data security Database management Data management Computer science [] [] PhD studentspostdocLife Science Researchers 200 meetings_and_conferences registration_of_interest Cloud computingcomputer-scienceDatabases
  • CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF

    28 February 2018

    CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF https://tess.elixir-europe.org/events/cwlexec-a-new-open-source-tool-to-run-cwl-workflows-on-lsf The [Common Workflow Language (CWL)](http://www.commonwl.org/) is a community-led specification for describing analysis _workflows_ and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and _high performance computing_ (HPC) environments. [IBM Spectrum LSF](https://www.ibm.com/us-en/marketplace/hpc-workload-management) (formerly IBM Platform LSF) is a complete workload management solution for demanding HPC environments. Featuring intelligent, policy-driven scheduling, it helps organizations accelerate research and design while controlling costs through superior resource utilization. Recognizing the popularity of CWL among LSF users, we introduce a new open source project **CWLEXEC** to support running CWL workflows on LSF. The project will feature smooth integration with LSF with high efficiency and scalability, self-healing of workflows, support user-specified submission options while keeping CWL definitions portable, and other benefits. * **Title**: CWLEXEC: A new open source tool to run CWL workflows on LSF * **Presenter:** Qingda Wang, Principal Architect, IBM Spectrum LSF Family Products and OEM * **Time**: 2018-02-28 14:00 GMT / 15:00 CET 2018-02-28 14:00:00 UTC 2018-02-28 15:00:00 UTC BioExcel Bioinformatics Genomics Workflows University of ManchesterBioExcel CoE Stian Soiland-Reyes http://ask.bioexcel.eu/ [] bioinformaticiansHPC users workshops_and_courses registration_of_interest WorkflowsCWLHPCLSF
  • Introduction to Galaxy and the GVL

    20 March 2018

    Carlton, Australia

    Introduction to Galaxy and the GVL https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-gvl 2018-03-20 09:30:00 UTC 2018-03-20 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] GalaxyGenomics
  • Variant Calling with Galaxy & the GVL for beginners

    21 March 2018

    Carlton, Australia

    Variant Calling with Galaxy & the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-the-gvl-for-beginners-0281d622-39e8-4e65-92a0-02ba3f2b2fb8 2018-03-21 09:30:00 UTC 2018-03-21 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant callingGalaxyGenomics
  • Population Genomics: background and tools

    21 - 27 April 2018

    Napoli, Italy

    Population Genomics: background and tools https://tess.elixir-europe.org/events/population-genomics-background-and-tools Study methods in population genomics have been profoundly reshaped in the last few years thanks to the growing availability of complete genomic sequences at population level. The rapid and recent growth of data and methods calls for new approaches to become routine in evolutionary genomics laboratories. The objective of this Practical Course is to give an overview of state of the art methods in population genomics combining lecturing from outstanding experienced population geneticists and software developers. All conceptual innovation will be presented in lectures and applied in practice both individually and in group work. 2018-04-21 09:00:00 UTC 2018-04-27 16:30:00 UTC Chiara Batini (University of Leicester, UK), Vincenza Colonna (CNR, Napoli, IT) and Allegra Via (CNR-IBPM, IT) Via Pietro Castellino, 111, Napoli, Italy Via Pietro Castellino, 111 Napoli Città Metropolitana di Napoli Italy 80131 Genomics Bioinformatics Population genetics Consiglio Nazionale delle Ricerche Istituto di Genetica e Biofisica “Adriano Buzzati-Traverso” elixir.popgen.2018@gmail.com Elixir Italy evolutionary biologists who already have bioinformatics skills. PhD students and Post-Doc researchers will benefit the most out of this course, but applications from all candidates will be evaluated in their context 28 workshops_and_courses first_come_first_servedregistration_of_interest genomicsPopulation genetics
  • Beacon - 2018 AHM Workshop

    7 June 2018

    Berlin, Germany

    Elixir node event
    Beacon - 2018 AHM Workshop https://tess.elixir-europe.org/events/beacon-2018-ahm-workshop ELIXIR workshop "Beacon", Jun 7 2018 at the ELIXIR AHM 2018, Berlin, Germany 2018-06-07 09:00:00 UTC 2018-06-07 13:00:00 UTC ELIXIR Germany and Beacon community Hotel Berlin Berlin, 17, Lützowplatz, Berlin, Germany Hotel Berlin Berlin, 17, Lützowplatz Berlin Berlin Germany Genomics Hotel Berlin Berlin [] life scientistsResearchers 30 workshops_and_courses registration_of_interest genomicsdata managementeLearningEeLP
  • BITS2018/Eixir-IIB Workshop on Docker and Reproducibility

    25 - 26 June 2018

    Torino, Italy

    BITS2018/Eixir-IIB Workshop on Docker and Reproducibility https://tess.elixir-europe.org/events/bits2018-eixir-iib-workshop-on-docker-and-reproducibility Docker is a container framework for Linux that allows a developer to make easier the creation, deployment and execution of applications by using containers. During the workshop the participant will learn the core concepts of Docker and how to easily embed bioinformatic pipelines/workflows into a docker container. This workshop is a satellite event held jointly with the BITS Annual Meeting 2018. 2018-06-25 09:00:00 UTC 2018-06-26 18:00:00 UTC BITS2018/ELIXIR-IIB Via Nizza, 52 Molecular Biotechonology Center, University of Turin, Torino, Italy Via Nizza, 52 Molecular Biotechonology Center, University of Turin Torino Città Metropolitana di Torino Italy 10126 Computer science Bioinformatics University of Turin beccuti@di.unito.it [] bioinformaticiansBiologists, Genomicists, Computer ScientistsPhD and graduate students, young researchers and PIs in the life science and computational biology field 24 workshops_and_courses first_come_first_servedregistration_of_interest DockerReproducibilityContainercomputer-science
  • Genome assembly and annotation course 4

    24 - 28 September 2018

    Montferrier-sur-Lez (Montpellier area), France

    Elixir node event
    Genome assembly and annotation course 4 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-4 ELIXIR Genome assembly and annotation course 4, Sept 24-28 2018 at the CIRAD, Montpellier, France 2018-09-24 09:00:00 UTC 2018-09-28 17:00:00 UTC ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI Cirad, 389, Avenue Agropolis, Montferrier-sur-Lez (Montpellier area), France Cirad, 389, Avenue Agropolis Montferrier-sur-Lez (Montpellier area) Hérault France Genomics CIRAD elixir@mf.uni-lj.si [] life scientistsResearchersPhD students 25 [] registration_of_interest Genomics AssemblyTrainingeLearningEeLP
  • Linux for Genomics

    1 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-4e98de3e-0102-46ab-9720-22f1122fd31d Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2018-10-01 09:00:00 UTC 2018-10-01 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsLinux
  • Introduction to High Performance Computing

    15 October 2018

    Melbourne, Australia

    Introduction to High Performance Computing https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-3be3f197-c7f9-45d0-8728-dea417d57580 2018-10-15 02:30:00 UTC 2018-10-15 05:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsHPC
  • Workshop at CUK

    16 October 2018

    Korea (Republic of)

    Workshop at CUK https://tess.elixir-europe.org/events/workshop-at-cuk During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-10-16 09:00:00 UTC 2018-10-16 00:00:00 UTC The Catholic University of Korea, Korea (Republic of) The Catholic University of Korea Korea (Republic of) [] [] [] workshops_and_courses [] Open Targets
  • Genome sequencing technologies, assembly, variant calling and statistical genomics

    22 October - 2 November 2018

    Oslo, Norway

    Elixir node event
    Genome sequencing technologies, assembly, variant calling and statistical genomics https://tess.elixir-europe.org/events/genome-sequencing-technologies-assembly-variant-calling-and-statistical-genomics-3d1544a3-a560-4b49-9e8c-af9167caea91 2018-10-22 09:00:00 UTC 2018-11-02 17:00:00 UTC NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology Gaustadalléen 23, 23, Gaustadalléen, Oslo, Norway Gaustadalléen 23, 23, Gaustadalléen Oslo Oslo kommune Norway Sequencing Statistics and probability Bioinformatics Genomics university of Oslo contact-norbis@uib.no NORBIS PhD studentsPost DocsResearchers [] registration_of_interest genomicsbioinformaticsGenome sequence analysis
  • MSc course, Understanding bioinformatics resources and their application

    4 - 5 December 2018

    United Kingdom

    MSc course, Understanding bioinformatics resources and their application https://tess.elixir-europe.org/events/msc-course-understanding-bioinformatics-resources-and-their-application During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-12-04 09:00:00 UTC 2018-12-05 00:00:00 UTC UCL, United Kingdom UCL United Kingdom [] [] [] [] [] Open Targets
  • OpenRiskNet/NanoCommons ontology meeting

    13 - 14 December 2018

    Brussels, Belgium

    OpenRiskNet/NanoCommons ontology meeting https://tess.elixir-europe.org/events/openrisknet-nanocommons-ontology-meeting The goal of this meeting is to get a picture of the ongoing ontology activities in the toxicology area, harmonize these efforts and the developed ontologies therein, and extend the existing toxicology ontology to support OpenRiskNet and NanoCommons tasks. Part of this will be the ontological annotation of OpenRiskNet Application Programming Interfaces (APIs) as used on their cloud. Other goals include extension of the ontology with missing terms (if any), potentially write up guidance documents, and annotation of data sets (possible via OpenRiskNet data APIs). 2018-12-13 13:00:00 UTC 2018-12-14 14:00:00 UTC University of Birmingham office in Brussels, Brussels, Belgium University of Birmingham office in Brussels Brussels Belgium Ontology and terminology Toxicology [] NanoCommonsOpenRiskNetH2020 [] workshops_and_courses [] risk assessmentnanosafetydata annotationservice descriptions
  • ELIXIR TtR course: Basic genomics using advanced analysis tools

    20 - 21 December 2018

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR TtR course: Basic genomics using advanced analysis tools https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si [] life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
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