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  • Host genetics control of infectious diseases

    28 - 30 September 2011

    Paris, France

    Host genetics control of infectious diseases https://tess.elixir-europe.org/events/host-genetics-control-of-infectious-diseases 2011-09-28 09:00:00 UTC 2011-09-30 00:00:00 UTC Institut Pasteur Institut Pasteur, Paris, France Institut Pasteur Paris France Genomics Public health and epidemiology [] [] [] meetings_and_conferences [] ImmunologyDiseases
  • Pharmacogenomics and Personalised Medicine 2011

    29 September - 2 October 2011

    Hinxton, United Kingdom

    Pharmacogenomics and Personalised Medicine 2011 https://tess.elixir-europe.org/events/pharmacogenomics-and-personalised-medicine-2011 2011-09-29 00:00:00 UTC 2011-10-02 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom Genomics Bioinformatics [] [] [] meetings_and_conferences [] PersonalizedMedicine
  • Molecular Diagnostics World Congress

    29 - 30 September 2011

    South San Francisco, United States of America

    Molecular Diagnostics World Congress https://tess.elixir-europe.org/events/molecular-diagnostics-world-congress 2011-09-29 09:00:00 UTC 2011-09-30 00:00:00 UTC Select Biosciences The South San Francisco Conference Center, South San Francisco, United States of America The South San Francisco Conference Center South San Francisco United States of America Preclinical and clinical studies [] [] [] meetings_and_conferences [] MolecularDiagnosticsPersonalizedMedicine
  • Omics and Personalised Health

    16 - 18 February 2012

    Heidelberg, Germany

    Omics and Personalised Health https://tess.elixir-europe.org/events/omics-and-personalised-health 2012-02-16 00:00:00 UTC 2012-02-18 00:00:00 UTC EMBL Heidelberg European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Proteomics Genomics [] [] [] meetings_and_conferences [] PersonalizedMedicine
  • 2nd Annual Regulatory Cells in Autoimmunity event: Analysing and moderating function

    29 March 2012

    London, United Kingdom

    2nd Annual Regulatory Cells in Autoimmunity event: Analysing and moderating function https://tess.elixir-europe.org/events/2nd-annual-regulatory-cells-in-autoimmunity-event-analysing-and-moderating-function 2012-03-29 00:00:00 UTC 2012-03-29 00:00:00 UTC EuroSciCon The Penridge Suite, London, United Kingdom The Penridge Suite London United Kingdom Immunology [] [] [] meetings_and_conferences [] Immunology
  • Antibody-Drug Conjugates

    3 - 4 May 2012

    Boston, United States of America

    Antibody-Drug Conjugates https://tess.elixir-europe.org/events/antibody-drug-conjugates-30d0f53a-7d73-4275-be78-a090a505cc10 2012-05-03 09:00:00 UTC 2012-05-04 00:00:00 UTC Cambridge Healthtech Institute The Boston Park Plaza Hotel&Towers, Boston, United States of America The Boston Park Plaza Hotel&Towers Boston United States of America [] [] [] meetings_and_conferences [] Immunology
  • New Perspectives on Immunity to Infection

    19 - 22 May 2012

    Heidelberg, Germany

    New Perspectives on Immunity to Infection https://tess.elixir-europe.org/events/new-perspectives-on-immunity-to-infection 2012-05-19 00:00:00 UTC 2012-05-22 00:00:00 UTC EMBL Heidelberg European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Preclinical and clinical studies [] [] [] meetings_and_conferences [] DiseasesImmunology
  • Translational Genomics Pipeline: From Populations to Individuals

    18 - 21 June 2012

    Hinxton, United Kingdom

    Translational Genomics Pipeline: From Populations to Individuals https://tess.elixir-europe.org/events/translational-genomics-pipeline-from-populations-to-individuals 2012-06-18 00:00:00 UTC 2012-06-21 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom Genomics Preclinical and clinical studies [] [] [] meetings_and_conferences [] DiseasesPersonalizedMedicinePharmacogenomics
  • The 8TH Congress of Toxicology in Developing Counties (8CTDC)

    10 - 13 September 2012

    Bangkok, Thailand

    The 8TH Congress of Toxicology in Developing Counties (8CTDC) https://tess.elixir-europe.org/events/the-8th-congress-of-toxicology-in-developing-counties-8ctdc 2012-09-10 09:00:00 UTC 2012-09-13 00:00:00 UTC Thai Society of Toxicology Sofitel Centara Grand Bangkok, Bangkok, Thailand Sofitel Centara Grand Bangkok Bangkok Thailand Physiology Pharmacology Medicine [] [] [] meetings_and_conferences [] Toxicology
  • 7th Conference of the World Mycotoxin Forum and X111th IUPAC International Symposium on Mycotoxins and Phycotoxins

    5 - 9 November 2012

    Rotterdam, Netherlands

    7th Conference of the World Mycotoxin Forum and X111th IUPAC International Symposium on Mycotoxins and Phycotoxins https://tess.elixir-europe.org/events/7th-conference-of-the-world-mycotoxin-forum-and-x111th-iupac-international-symposium-on-mycotoxins-and-phycotoxins 2012-11-05 00:00:00 UTC 2012-11-09 00:00:00 UTC WMF & IUPAC Rotterdam, Netherlands Rotterdam Netherlands Medicine [] [] [] meetings_and_conferences [] MicrobiologyToxicology
  • Advances in Microarray Technology

    5 - 6 March 2013

    Barcelona, Spain

    Advances in Microarray Technology https://tess.elixir-europe.org/events/advances-in-microarray-technology 2013-03-05 00:00:00 UTC 2013-03-06 00:00:00 UTC Select Bio Barcelona, Spain Barcelona Spain [] [] [] meetings_and_conferences [] Toxicology
  • Nanomedicine 2013

    11 - 12 April 2013

    Barcelona, Spain

    Nanomedicine 2013 https://tess.elixir-europe.org/events/nanomedicine-2013 2013-04-11 00:00:00 UTC 2013-04-12 00:00:00 UTC Select Bio Barcelona, Spain Barcelona Spain Medicine [] [] [] meetings_and_conferences [] Toxicology
  • Nanomedicine

    30 - 31 May 2013

    New Delhi, India

    Nanomedicine https://tess.elixir-europe.org/events/nanomedicine 2013-05-30 09:00:00 UTC 2013-05-31 00:00:00 UTC New Delhi, India New Delhi India [] [] [] meetings_and_conferences [] ToxicologyGreennanotechnology
  • EU research into alternatives to animal testing

    27 - 28 August 2013

    Cologne, Germany

    EU research into alternatives to animal testing https://tess.elixir-europe.org/events/eu-research-into-alternatives-to-animal-testing 2013-08-27 01:00:00 UTC 2013-08-28 01:00:00 UTC diXa University of Cologne, Cologne, Germany University of Cologne Cologne Germany Pharmacology Pathology Metabolomics Genomics [] [] [] workshops_and_courses [] toxicogenomicsToxicology
  • Antibody-Drug Conjugates

    21 - 22 January 2015

    San Diego, United States of America

    Antibody-Drug Conjugates https://tess.elixir-europe.org/events/antibody-drug-conjugates 2015-01-21 09:00:00 UTC 2015-01-22 00:00:00 UTC Cambridge Healthtech Institute The Boston Park Plaza Hotel&Towers, San Diego, United States of America The Boston Park Plaza Hotel&Towers San Diego United States of America Transcriptomics Medicine [] [] [] meetings_and_conferences [] Immunology
  • RNA-Seq Data Analysis Using Galaxy

    26 May 2016

    Sydney, Australia

    RNA-Seq Data Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-26 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Westmead, Sydney, Australia Children’s Medical Research Institute, Westmead Sydney Australia Data architecture, analysis and design RNA-Seq [] [] [] workshops_and_courses [] BPAABRGalaxy
  • Variant Detection Using Galaxy

    27 May 2016

    Sydney, Australia

    Variant Detection Using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy Variant Detection using Galaxy is a one-day, hands-on workshop that will cover the concepts of detecting small variants, including SNPs and small indels, from next-generation sequencing data. You will use and compare a number of popular detection tools, visualise variants using a genome browser, and annotate SNPs for predicting biological effects. Course Outline -During this course you will learn about; -The tool and workflows of SNP and indel detection -Quality filtering and other techniques for improving SNP prediction accuracy -Comparison of variant detection software -the use of the Galaxy platform for variant detection analysis 2016-05-27 09:00:00 UTC 2016-05-27 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Sydney, Australia Children’s Medical Research Institute Sydney Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBPAGalaxyvariantcalling
  • PM16 Precision medicine

    27 - 30 September 2016

    Oeiras, Portugal

    PM16 Precision medicine https://tess.elixir-europe.org/events/pm16-precision-medicine The implementation of cancer genomics into the clinic is becoming a reality. Personalized medicine or Precision medicine as other authors refers, uses molecular data of a specific patient to guide clinical decisions such as prevention, diagnosis and treatment. This will revolutionize healthcare and will play a dominant role in the future of cancer therapy. Bioinformatics analyses are essential to identify patients who will benefit from treatment based on their molecular profile, and to tailor chemotherapeutic regimens accordingly. The aim of the course is to present a complete computational pipeline for the analysis and interpretation of Next-Generation Sequencing (NGS) data such as exome sequencing or targeted panels that are commonly used in the clinic. We will address the implementation of large-scale genomic sequencing in clinical practice and the recently developed computational strategies for the analysis of NGS data with a particular emphasis on the interpretation of the results, selection of biomarkers of drug response and afford opportunities to match therapies with the characteristics of the individual patient's tumour. Exercises and case studies focused on cancer will be used to illustrate the principles of how genetics influence led to refining diagnoses and personalized treatment of cancer disease. 2016-09-27 09:00:00 UTC 2016-09-30 00:00:00 UTC Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 901 [] [] [] workshops_and_courses [] PersonalizedMedicine
  • Large-scale analytical workflows on the cloud using Galaxy and Globus

    16 November 2016

    Large-scale analytical workflows on the cloud using Galaxy and Globus https://tess.elixir-europe.org/events/large-scale-analytical-workflows-on-the-cloud-using-galaxy-and-globus We would like to invite you to attend the 8th webinar in BioExcel’s webinar series on computational methods and applications for biomolecular research, which will take place on 16th November 2016: Presenter: Ravi Madduri (introduction by Stian Soiland-Reyes) When: Wed 16th November 2016 16:00 CET (2016-11-16 15:00 UTC) Registration: Free In this BioExcel webinar we are delighted to have Ravi Madduri from Argonne National Laboratory and University of Chicago present Globus Genomics, a system developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data, combining Galaxy workflows with cloud technologies like Amazon EC2 and Globus File Transfer. This system achieves a high degree of end-to-end automation that encompasses every stage of data analysis including initial data retrieval from remote sequencing centers or storage (via the Globus file transfer system); specification, configuration, and reuse of multi-step processing pipelines (via the Galaxy workflow system); creation of custom Amazon Machine Images and on-demand resource acquisition via a specialized elastic provisioner (on Amazon EC2); and efficient scheduling of these pipelines over many processors (via the HTCondor scheduler). The system allows biomedical researchers to perform rapid analysis of large NGS datasets in a fully automated manner, without software installation or a need for any local computing infrastructure. Ravi’s work is part of the BD2K center Big Data for Discovery Science, building infrastructure for reproducible workflows using minids (minimal viable identifiers), analyzing data at scale using identified Docker containers, publish results in to Globus Publication services thus providing an end-to-end framework for reproducible research. In this BioExcel webinar, Ravi will present Globus Genomics and the technologies used to achieve large-scale analytical Galaxy workflows on the cloud. We think this will be of interest not just for the genomics community, but for any scientific workflow users who need to consider distributed deployments, data management and scalability. 2016-11-16 15:00:00 UTC 2016-11-16 16:00:00 UTC BioExcel Whole genome sequencing High-throughput sequencing Genomics Workflows University of ManchesterUniversity of ChicagoArgonne National Laboratory Please register at https://attendee.gotowebinar.com/register/5808939110698431491. You will then receive an email with details of how you can connect to the webinar. [] bioinformaticianssoftware engineersGalaxy usersCloud users workshops_and_courses first_come_first_served CloudGalaxyGlobusNGSNext generation sequencing data analysis
  • Introduction to Galaxy Workshop

    12 April 2017

    Saint Lucia, Australia

    Introduction to Galaxy Workshop https://tess.elixir-europe.org/events/introduction-to-galaxy-workshop 2017-04-12 14:00:00 UTC 2017-04-12 16:00:00 UTC University of Queensland Multi-media room, Queensland Bioscience Precinct, University of Queensland, Saint Lucia, Australia Multi-media room, Queensland Bioscience Precinct, University of Queensland Saint Lucia Brisbane City Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Galaxy
  • Galaxy User Group Meeting and Presentation

    3 May 2017

    Saint Lucia, Australia

    Galaxy User Group Meeting and Presentation https://tess.elixir-europe.org/events/galaxy-user-group-meeting-and-presentation 2017-05-03 10:00:00 UTC 2017-05-03 12:00:00 UTC IMB, Queensland Biomedical Precinct, The University of Queensland, Saint Lucia, Australia IMB, Queensland Biomedical Precinct, The University of Queensland Saint Lucia Brisbane City Australia University of Queensland [] [] meetings_and_conferences [] Galaxy
  • Workflow4Experimenters International Course

    29 May - 2 June 2017

    Workflow4Experimenters International Course https://tess.elixir-europe.org/events/workflow4experimenters-international-course Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, and NMR analysis (Giacomoni et al, 2015). Goals: During this one-week course, participants will learn how to use the W4M infrastructure to analyze their own dataset. Morning sessions will be dedicated to methodology and tools. Afternoon sessions will be devoted to tutoring. 2017-05-29 08:35:00 UTC 2017-06-02 19:25:00 UTC IFB (Elixir-Fr) NMR Metabolic pathways Metabolomics Pasteur Institute, PARIS [] Life Science Researchers workshops_and_courses [] GalaxyWorkflows
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • Training Course on RNA-Seq data analysis

    18 - 20 July 2017

    Milano, Italy

    Training Course on RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-rna-seq-data-analysis The course will provide students with theoretical and practical knowledge on how to perform bioinformatic analyses of RNA-Seq data, mainly aimed at the identification of genes differentially expressed across different conditions. 2017-07-18 14:00:00 UTC 2017-07-20 12:00:00 UTC Allegra Via, Giulio Pavesi, Federico Zambelli, Matteo Chiara Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26, Milano, Italy Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26 Milano Città Metropolitana di Milano Italy RNA-Seq University of Milan, Milan, Italy elixir.ita.training@gmail.com, giulio.pavesi@unimi.it ELIXIR Italy PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics. 30 workshops_and_courses [] RNA-SeqGalaxy
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Genome assembly using Galaxy

    2 - 3 August 2017

    Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy 2017-08-02 09:00:00 UTC 2017-08-03 12:30:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Genome AssemblyGalaxy
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