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  • Bootcamp for Bioinformaticians

    6 November 2013

    Norwich, United Kingdom

    Bootcamp for Bioinformaticians https://tess.elixir-europe.org/events/bootcamp-for-bioinformaticians 2013-11-06 00:00:00 UTC 2013-11-06 00:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • TGAC Software Carpentry Bootcamp

    3 - 4 February 2014

    Norwich, United Kingdom

    TGAC Software Carpentry Bootcamp https://tess.elixir-europe.org/events/tgac-software-carpentry-bootcamp 2014-02-03 00:00:00 UTC 2014-02-04 00:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • De novo Assembly

    3 - 6 March 2014

    Norwich, United Kingdom

    De novo Assembly https://tess.elixir-europe.org/events/de-novo-assembly 2014-03-03 00:00:00 UTC 2014-03-06 00:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Genomics Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • SeqAhead: NGS current challenges and data analysis for plant researchers

    19 - 23 May 2014

    Norwich, United Kingdom

    SeqAhead: NGS current challenges and data analysis for plant researchers https://tess.elixir-europe.org/events/seqahead-ngs-current-challenges-and-data-analysis-for-plant-researchers 2014-05-19 01:00:00 UTC 2014-05-23 01:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Genomics Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • TGAC Summer School: A walk through Bioinformatics

    2 - 6 June 2014

    Norwich, United Kingdom

    TGAC Summer School: A walk through Bioinformatics https://tess.elixir-europe.org/events/tgac-summer-school-a-walk-through-bioinformatics 2014-06-02 01:00:00 UTC 2014-06-06 01:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • Metagenomics: From bench to data analysis

    8 - 12 September 2014

    Norwich, United Kingdom

    Metagenomics: From bench to data analysis https://tess.elixir-europe.org/events/metagenomics-from-bench-to-data-analysis-c1e58d99-e86f-40ca-9a4a-c86a6b54b57d 2014-09-08 01:00:00 UTC 2014-09-12 01:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH [] [] [] workshops_and_courses [] TGACbioinformatics
  • Training School: genotyping by sequencing

    3 - 7 November 2014

    Norwich, United Kingdom

    Training School: genotyping by sequencing https://tess.elixir-europe.org/events/training-school-genotyping-by-sequencing 2014-11-03 00:00:00 UTC 2014-11-07 00:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom NR4 7UH Genomics Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • Metagenomics: From bench to data analysis

    12 - 16 October 2015

    Norwich, United Kingdom

    Metagenomics: From bench to data analysis https://tess.elixir-europe.org/events/metagenomics-from-bench-to-data-analysis 2015-10-12 01:00:00 UTC 2015-10-16 01:00:00 UTC TGAC TGAC, Norwich, United Kingdom TGAC Norwich United Kingdom NR4 7UH Metagenomics Bioinformatics [] [] [] workshops_and_courses [] TGACbioinformatics
  • ELIXIR Workshop Genomics

    7 - 8 November 2016

    Bruxelles, Belgium

    Elixir node event
    ELIXIR Workshop Genomics https://tess.elixir-europe.org/events/elixir-workshop-genomics Goal The fast generation of large amounts of data is fundamentally changing the way how research is done today. Many domains of research are challenged with managing, analyzing and sharing genomics data. This is not just a challenge, it is an oppurtunity to implement this workshop for researchers to learn basic handling of genomics concepts, skills and tools. This workshop is aimed at researchers in the life sciences at all career stage and is designed for learners with little to no prior knowledge of Linux and command line tools or biological networks in Cytoscape. A basic knowledge of programming in R is recommended. ​ Workshop Topics The main ambition or this workshop is that researchers get more familiar with genomics data and handle it in a more efficient way. The following topics will be covered during the workshop.   DAY 1 Introduction to Linux and the command line The first session will introduce you to the use of Linux and the command line for managing and analyzing genomics data.   DAY 2​ Data manipulation in R This session gives an introduction to the use of the R packages plyr and ggplot2 for data manipulation and subsequent graphing. Initiation Cytoscape In this tutorial, you will be introduced to the basics of Cytoscape (how to make a network, change the visualisation parameters such as the layout, ...), and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. 2016-11-07 09:00:00 UTC 2016-11-08 17:00:00 UTC ELIXIR Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise, Bruxelles, Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise Bruxelles Belgium Data visualisation Molecular interactions, pathways and networks Bioinformatics VIB christof.debo@vib.be ELIXIR-BE PhD studentsPost Docs [] [] Cytoscape R-programming Linux
  • Introduction to High Performance Computing

    3 May 2017

    Carlton, Australia

    Introduction to High Performance Computing https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-b382ec6e-3021-45a5-8d2c-9d29f298f5c0 Using High Performance Computing (HPC) resources such as Melbourne Bioinformatics in an effective and efficient manner is key to modern research. This workshop will introduce you to HPC environments and assist you to get on with your research. 2017-05-03 13:30:00 UTC 2017-05-03 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Computer science University of Melbourne [] [] workshops_and_courses [] bioinformatics
  • COMBINE R for Bioinformatics workshop

    18 - 19 May 2017

    Carlton, Australia

    COMBINE R for Bioinformatics workshop https://tess.elixir-europe.org/events/combine-r-for-bioinformatics-workshop Bioconductor is an Open-Source repository for bioinformatics software in R Statistical Programming Language. Bioconductor provides core technologies and infrastructures that facilitates day-to-day bioinformatics data analysis, including data retrieval, data processing and data analysis. This is a one-day intensive workshop on Bioconductor core packages such as GenomicFeatures, GenomicRanges, GenomicAlignments, Biostrings, Rsamtools, GEOquery, AnnotationHub and other annotation packages. An intermediate knowledge of R is required. Instructors: Anna Quaglieri, Paul Harrison, Maria Doyle, Agnieszka Aleksandra Golicz and Soroor Hediyeh-Zadeh Details: What: COMBINE R for Bioinformatics workshop Date: 19th May 2017 Time: 9am – 5pm Location: Lab14, 700 Swanston St, Carlton VIC 3053 Registration: http://www.abacbs.org/combineworkshops/bioconductor-melb-may-2017 Price: Student $15, Non-student $30 This event is sponsored by Melbourne Bioinformatics. 2017-05-18 23:00:00 UTC 2017-05-19 07:00:00 UTC Soroor Hediyeh-Zadeh combine@combine.org.au LAB-14, 700, Swanston Street, Carlton, Australia LAB-14, 700, Swanston Street Carlton Melbourne City Australia Genomics Bioinformatics [] Melbourne Bioinformatics [] workshops_and_courses first_come_first_served R-programming
  • Bioinformatics for Molecular Biologists (4-day course)

    29 May - 2 June 2017

    Alcobendas, Spain

    Bioinformatics for Molecular Biologists (4-day course) https://tess.elixir-europe.org/events/bioinformatics-for-molecular-biologists-4-day-course-56d73c61-6703-4c8f-b7c7-91a8ec441a91 Over 4 days you will explore the open source world associated to bioinformatics with our experts. You will be introduced with various topics, from the basics of Linux, to widely used programming languages such as Perl™ and Python™ and the world’s most popular open source database MySQL™. A well balanced combination of lectures and practical sessions will reinforce new learning progressively building momentum towards a practical project where the newly acquired knowledge will be applied. New powerful options will be introduced to give you more confidence when handling large datasets. Ultimately, you will discover what’s beyond rigid user interfaces and apply your learning with real data. • Manage your own database (create your knowledge base). Free yourself from spreadsheets! • Personalise your analysis beyond options. Available in Torrent Browser or Ion Reporter™ software •Parse your VCF (extract information from flat files). Compare different samples and find the most common variants 2017-05-29 13:04:00 UTC 2017-06-02 13:04:00 UTC Thermo Fisher Scientific Avenida de la Vega, 1, Alcobendas, Spain Avenida de la Vega, 1 Alcobendas Madrid Spain 28108 [] learn-europe@thermofisher.com [] [] 6 [] first_come_first_served bioinformaticsPython for Biologistslinuxperl
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • Introduction to R

    12 - 13 July 2017

    Clayton, Australia

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-ab6dceb1-f7e0-4583-9b7e-4344a50535f3 This workshop will teach the fundamentals of R. You will learn to quickly visualize and summarize data from experiments involving multiple experimental factors and measurements. Register here: https://www.eventbrite.com/e/introduction-to-r-tickets-34994825465 2017-07-12 23:00:00 UTC 2017-07-13 06:00:00 UTC Monash Bioinformatics Platform Room E365 (Level 3, East wing, 20 Chancellors Walk- Menzies Building), Monash University Clayton Campus, Wellington Road, Clayton, Australia Room E365 (Level 3, East wing, 20 Chancellors Walk- Menzies Building), Monash University Clayton Campus, Wellington Road Clayton Australia Bioinformatics Monash University [] [] workshops_and_courses [] bioinformatics R-programming
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • An Introduction to Genomics with R

    18 July 2017

    Adelaide, Australia

    An Introduction to Genomics with R https://tess.elixir-europe.org/events/an-introduction-to-genomics-with-r 2017-07-18 09:00:00 UTC 2017-07-18 17:00:00 UTC University of Adelaide Room 422, Horace Lamb Building, The University of Adelaide, Adelaide, Australia Room 422, Horace Lamb Building, The University of Adelaide Adelaide SA Australia Bioinformatics University of Adelaide [] [] workshops_and_courses [] R-programminggenomics
  • Introduction to R

    24 July 2017

    Clayton, Australia

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-fa4063f1-c129-4635-8b07-6e906e39750c 2017-07-24 10:00:00 UTC 2017-07-24 17:00:00 UTC Monash Bioinformatics Training Room 2 (T2), Matheson Library, Monash University, Clayton, Australia Training Room 2 (T2), Matheson Library, Monash University Clayton Australia Bioinformatics Monash University [] [] workshops_and_courses [] R-programming
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Introduction to Programming with R

    27 July 2017

    Sydney, Australia

    Introduction to Programming with R https://tess.elixir-europe.org/events/introduction-to-programming-with-r-607032a5-9a9f-443a-b6a8-fe4358cdeb19 2017-07-27 09:30:00 UTC 2017-07-27 16:30:00 UTC Intersect Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building , Sydney, Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building Sydney Australia Bioinformatics University of New South Wales [] [] workshops_and_courses [] R-programming
  • Software Carpentry - Introduction to Programming in R

    8 August 2017

    Melbourne, Australia

    Software Carpentry - Introduction to Programming in R https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-in-r 2017-08-08 09:30:00 UTC 2017-08-08 16:30:00 UTC Intersect Australia HS3 401, La Trobe University - Bundoora , Melbourne, Australia HS3 401, La Trobe University - Bundoora Melbourne Australia Bioinformatics La Trobe University [] [] workshops_and_courses [] R-programming
  • Data preparation, processing and reporting using R

    9 August 2017

    Saint Lucia, Australia

    Data preparation, processing and reporting using R https://tess.elixir-europe.org/events/data-preparation-processing-and-reporting-using-r 2017-08-09 09:00:00 UTC 2017-08-09 17:00:00 UTC QFAB Bioinformatics Multimedia room 3.141, Queensland Bioscience Precinct, The University of Queensland, Saint Lucia, Australia Multimedia room 3.141, Queensland Bioscience Precinct, The University of Queensland Saint Lucia Brisbane Australia Data management University of Queensland [] [] workshops_and_courses [] R-programmingBioinformatics
  • Research Data Management

    28 August 2017

    Sydney, Australia

    Research Data Management https://tess.elixir-europe.org/events/research-data-management-9c8ee215-cb2d-4205-b2d4-f2d6e0f78f93 2017-08-28 09:30:00 UTC 2017-08-28 12:30:00 UTC Intersect Australia Wallace Wurth LG02, Lower ground floor, Wallace Wurth Building, UNSW, Sydney, Australia Wallace Wurth LG02, Lower ground floor, Wallace Wurth Building, UNSW Sydney Australia Data management University of New South Wales [] [] workshops_and_courses [] bioinformatics
  • Sequences and genomic features in R

    4 September 2017

    Melbourne, Australia

    Sequences and genomic features in R https://tess.elixir-europe.org/events/sequences-and-genomic-features-in-r This course introduces Bioconductor, a comprehensive collection of R packages related to bioinformatics. We will demonstrate the Bioconductor way of doing things and how to work with biological data types, and equip you to confidently approach whichever specific Bioconductor packages you need. Pre-requisite To attend this class, you must have attended our introductory R course or be reasonably familiar with the R language. 2017-09-04 14:00:00 UTC 2017-09-04 16:00:00 UTC Monash Bioinformatics Platform Melbourne, Melbourne, Australia Melbourne Melbourne Australia Bioinformatics Monash University Dr Sonika Tyagi, bioinformatics.platform@monash.edu [] PhD studentsPost-docsBioinformaticiansResearchers workshops_and_courses registration_of_interest R-programmingbioinformaticsBioconductor
  • Introduction to R

    6 September 2017

    Australia

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-94807d72-1f91-4c1b-8376-52ca3947b838 2017-09-06 09:00:00 UTC 2017-09-06 17:00:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Bioinformatics R-programming
  • Training course on Python for Life Scientists

    11 - 15 September 2017

    Roma, Italy

    Training course on Python for Life Scientists https://tess.elixir-europe.org/events/training-course-on-python-for-life-scientists Python is an object-oriented programming language that is ideal for biological data analysis. The course will start from zero knowledge, and will introduce the participants to all the basic concepts of Python such as calculating, organizing data, reading and writing files, program logic and writing larger programs. All the examples and practical sessions will focus on solving biological problems. In particular the sessions will cover: - working with DNA and protein sequences - data retrieval from files and their manipulation - running applications, such as BLAST, locally and from a script - finding motifs in sequence - parsing common file formats (Uniprot, GenBank, PDB) - ways to find and correct program errors. The course will be highly interactive and the students will continuously put theory into practice while learning. Basic Unix/Linux skills will be provided at the beginning of the course. 2017-09-11 09:00:00 UTC 2017-09-15 18:00:00 UTC Veronica Morea (CNR-IBPM, Rome, Italy), Allegra Via (ELIXIR-IIB Training Coordinator, CNR-IBPM, Italy), Loredana Le Pera (ELIXIR-IIB Training Team, IIT@Sapienza, Italy) Dipartimento di Scienze Biochimiche - Alessandro Rossi Fanelli, 332, Viale Regina Elena, Roma, Italy Dipartimento di Scienze Biochimiche - Alessandro Rossi Fanelli, 332, Viale Regina Elena Roma Città Metropolitana di Roma Italy 00185 Computer science Bioinformatics Computational biology Sapienza University of Rome elixir.ita.training@gmail.com, loredanalepera@gmail.com ELIXIR Italy BiologistsBioinformatics beginners 20 workshops_and_courses first_come_first_servedregistration_of_interest Python for BiologistsbioinformaticsComputer ProgrammingBiological databasesPython
  • Introductory Bioinformatics Workshops (Semester 2): Introduction to the Command Line

    19 September 2017

    Adelaide, Australia

    Introductory Bioinformatics Workshops (Semester 2): Introduction to the Command Line https://tess.elixir-europe.org/events/introductory-bioinformatics-workshops-semester-2-introduction-to-the-command-line This workshop is designed to give you the pre-requisite skills for accessing High Performance Computing (HPC) machines, like Phoenix. Basic data management strategies will also be covered in the context of next generation sequencing data. This course is accredited for 6 CaRST hours for any attending HDR students. All attendees are required to provide their own laptop for this course. No specific OS is required. 2017-09-19 09:00:00 UTC 2017-09-19 17:00:00 UTC University of Adelaide Room 422, Horace Lamb Building, The University of Adelaide, Adelaide, Australia Room 422, Horace Lamb Building, The University of Adelaide Adelaide SA Australia Bioinformatics University of Adelaide [] [] workshops_and_courses [] bioinformaticsComputer Programming
  • Introduction to DNA-seq NGS Analysis Workshop, November 2017

    20 - 21 November 2017

    Leicester, United Kingdom

    Elixir node event
    Introduction to DNA-seq NGS Analysis Workshop, November 2017 https://tess.elixir-europe.org/events/introduction-to-dna-seq-ngs-analysis-workshop-november-2017 This two day course serves as the first in a larger two-part course in conjunction with our Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop in December 2017, as well as a standalone introduction to DNA-seq. Attendees will receive an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping) and refinement using DNA-seq data. The course will conclude with a basic introduction to variant calling as a lead-in to the December workshop. 2017-11-20 09:00:00 UTC 2017-11-21 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Genetics University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] DNA-seqbioinformatics
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