6 events found
ISAtab, diXa data warehouse user interface, eChemportal
19 March 2013
Ispra, ItalyISAtab, diXa data warehouse user interface, eChemportal http://www.dixa-fp7.eu/dixa-training/dixa-training-agenda/dixa-ispra-training https://tess.elixir-europe.org/events/isatab-dixa-data-warehouse-user-interface-echemportal 2013-03-19 00:00:00 UTC 2013-03-19 00:00:00 UTC diXa Ispra, Italy Ispra Italy Metabolomics Bioinformatics    workshops_and_courses  toxicologytoxicogenomics
Small molecules, gene products and their interaction
2 - 6 July 2013
Maastricht, NetherlandsSmall molecules, gene products and their interaction http://www.nbic.nl/education/course-overview/pages3/1/coursedetails/small-molecules-gene-products-and-their-interaction/ https://tess.elixir-europe.org/events/small-molecules-gene-products-and-their-interaction 2013-07-02 00:00:00 UTC 2013-07-06 00:00:00 UTC NBIC Maastricht, Netherlands Maastricht Netherlands Systems biology Proteomics Metabolomics Genomics Bioinformatics    workshops_and_courses  toxicologytoxicogenomics
ELIXIR-EXCELERATE HPC Train-the-Researcher course
6 - 7 April 2017
Málaga, SpainELIXIR-EXCELERATE HPC Train-the-Researcher course https://elixir.mf.uni-lj.si/course/view.php?id=21 https://tess.elixir-europe.org/events/elixir-excelerate-hpc-train-the-researcher-course-3af9b3c7-94a5-46ae-a68c-1c73b87049ab ELIXIR-EXCELERATE HPC Train-the-Researcher course, Apr 6-7, 2017, Malaga, Spain 2017-04-06 09:00:00 UTC 2017-04-07 17:00:00 UTC Escuela Técnica Superior de Ingeniería Informática Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur, Málaga, Spain Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur Málaga Málaga Spain Computational biology Computer science Escuela Técnica Superior de Ingeniería Informática, University of Malaga  life scientistsResearchers workshops_and_courses registration_of_interest high-performance computingtrainingeLearningEeLP
H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1
20 August 2018H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1 https://www.youtube.com/watch?v=4_-pxWFUpfU&list=PLcQ0XMykNhCQJPz0amnbz9BPM4Bu0Nkgf https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series #### Computational requirements for running the H3ABioNet GWAS workflows The first of a series of seven online lectures for Genome Wide Association Studies (GWAS) will cover the technical requirements for setting up a your computational environment for running the H3ABioNet GWAS workflows. In this inaugural lecture of the series, Prof. Hazelhurst will cover the the following topics: Installing and using Nextflow Installing and using Github Use of containers for packaging and running tools Pulling the GWAS pipeline from Github and running it As this lecture aims to provide attendees with an environment to the run the H3ABioNet GWAS workflow at their own pace, there are some preliminary software requirements: Either a Linux machine or an Apple running macOS Ideally you should have machine with at least 2-4 cores and 8GB of RAM. Java 8 Nextflow installed (see installation instructions at https://www.nextflow.io/) Python 3 Please also install either Docker OR the following dependencies using pip3: Pandas, Matplotlib, Openpyxl, SciPy, NumPy PLINK 1.9 [Please also refer to the following documentation to obtain the H3ABioNet GWAS workflow]: https://github.com/h3abionet/h3agwas/blob/master/README.md 2018-08-20 15:00:00 UTC 2018-08-20 16:30:00 UTC H3ABioNet Population genomics Genotyping experiment Computational biology Workflows GWAS study Bioinformatics H3ABioNet email@example.com H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chipAnyone who wants to learn more about GWAS workshops_and_courses  NextflowDockerH3ABioNetGWASWorkflowsGenotyping array analysis bioinformaticsAfricaPopulation GenomicsReproducible ScienceH3Africa genotyping arrayHigh performance computingCloud computingGWAS workflowH3ABioNet GWAS 2018 Lecture Series
H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 3
27 August 2018H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 3 https://www.youtube.com/watch?v=4_-pxWFUpfU&list=PLcQ0XMykNhCQJPz0amnbz9BPM4Bu0Nkgf https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-3 ### Genotype calling from Illumina files The third of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce genotyping SNP array chips with particular emphasis on the H3Africa genotype chip. The lecture will cover common file formats when obtaining genotyping chip data from a service provider such as Illumina and software used for genotype calling. This lecture will also cover genotype calling, sample and probe quality control, probe viewing and exporting of data using GenomeStudio. Converting the data to PLINK format and some tips on troubleshooting and common pitfalls will be discussed. 2018-08-27 15:00:00 UTC 2018-08-27 16:00:00 UTC H3ABioNet Population genomics Bioinformatics Genotyping experiment Genomics Computational biology H3ABioNet firstname.lastname@example.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses  Genotype callingH3ABioNetGenotype callingGenome StudioH3Africa genotyping arrayAfrican populationsArray processingIllumina arraysFile formatsAnnotationsNon-polymorphicTop/Bottom annotationGenotype array probesIntensitiesConvert to PLINK format BioinformaticsGenome Wide Association Studies
H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4
29 August 2018H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4 https://www.youtube.com/watch?v=4_-pxWFUpfU&list=PLcQ0XMykNhCQJPz0amnbz9BPM4Bu0Nkgf https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-4 ### Quality control and its importance in GWAS In the fourth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS), the importance of doing good quality control for a GWAS will be discussed. The lecture will cover the types of errors one should control for, the specific bioinformatics tools used for quality control. Specific sample and SNP quality control steps that should be undertaken in a GWAS will be explored using specific examples. 2018-08-29 15:00:00 UTC 2018-08-29 16:30:00 UTC H3ABioNet Genotyping experiment GWAS study Computational biology Bioinformatics Population genomics Population genetics H3ABioNet email@example.com H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses  Genome Wide Association StudiesGenotype callingH3Africa genotyping arrayAfrican populationsQuality Control for GWASSample Quality ControlSNP Quality ControlPopulation GenomicsGenotypingPLINK formatPrincipal Component AnalysisLow minor allele frequencyMissingnessGWAS workflowDiscordant Sex informationNextflowGenotyping rate callHeterozygosity rateRelated and duplicate individualsIdentity by DescentHardy Weinberg EquilibriumBioinformaticsH3ABioNet GWAS 2018 Lecture Series
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