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Scientific topics: Computational biology  or Data architecture, analysis... 

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Keywords: eLearning  or Immunity  or EeLP  or toxicology  or python  or ABR 

  • Systems Metabolomics – A research collaborative in Melbourne

    3 March 2015

    Melbourne, Australia

    Systems Metabolomics – A research collaborative in Melbourne https://tess.elixir-europe.org/events/systems-metabolomics-a-research-collaborative-in-melbourne A Victorian Systems Biology Collaborative to engage researchers to present their latest projects. There would be a discussion forum and networking session to explore different perspectives on the future of metabolomics research. 2015-03-03 09:00:00 UTC 2015-03-03 00:00:00 UTC University of Melbourne Melbourne Brain Centre, Kenneth Myer Building, Parkville, Melbourne, Australia Melbourne Brain Centre, Kenneth Myer Building, Parkville Melbourne Australia Data architecture, analysis and design Data mining Systems biology Metabolomics [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • RNA-Seq using R

    28 September 2015

    Melbourne, Australia

    RNA-Seq using R https://tess.elixir-europe.org/events/rna-seq-using-r The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. Day one (Programming in R) is optional, for those well-versed in the R programming language, or programming in general. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. 2015-09-28 09:00:00 UTC 2015-09-28 00:00:00 UTC Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computer science Biomedical science Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • COMBINE STUDENT SYMPOSIUM 2015

    9 October 2015

    Sydney, Australia

    COMBINE STUDENT SYMPOSIUM 2015 https://tess.elixir-europe.org/events/combine-student-symposium-2015 The COMBINE Student Symposium is an opportunity for students and early-career researchers in computational biology, bioinformatics, and the life sciences to share their research with others in these fields. 2015-10-09 09:00:00 UTC 2015-10-09 00:00:00 UTC University of Sydney Charles Perkins Centre, Sydney, Australia Charles Perkins Centre Sydney Australia Data architecture, analysis and design Computational biology [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • AUSTRALIAN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY SOCIETY ANNUAL CONFERENCE 2015 (ABABCS 2015)

    10 - 11 October 2015

    Sydney, Australia

    AUSTRALIAN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY SOCIETY ANNUAL CONFERENCE 2015 (ABABCS 2015) https://tess.elixir-europe.org/events/australian-bioinformatics-and-computational-biology-society-annual-conference-2015-ababcs-2015 Australian Bioinformatics and Computational Biology Society Annual Conference 2015 (ABABCS 2015) to be held at the Garvan Medical Research Institute in Sydney on 10-11th October 2015. 2015-10-10 09:00:00 UTC 2015-10-11 00:00:00 UTC Garvan Institute of Medical Research Garvan Medical Research Institute, Sydney, Australia Garvan Medical Research Institute Sydney Australia Bioinformatics Computational biology [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • Australasian Genomic Technologies Conference

    11 - 14 October 2015

    Lovedale, Australia

    Australasian Genomic Technologies Conference https://tess.elixir-europe.org/events/australasian-genomic-technologies-conference The AGTA conference (Australasian Genomic Technologies Association, formerly known as AMATA) is an essential event for researchers and industry representatives who work with genomic technologies in a variety of contexts including platform development, medical genomics, functional genomics, non-model systems, epigenomics and plant genomics. 2015-10-11 09:00:00 UTC 2015-10-14 00:00:00 UTC Crowne Plaza Hunter Valley, Lovedale, Australia Crowne Plaza Hunter Valley Lovedale Australia Bioinformatics Genomics Computational biology [] [] [] meetings_and_conferences [] ABRlifescienceBioinformatics
  • ADVANCED BIOINFORMATICS WORKSHOP FOR EARLY CAREER RESEARCHERS

    9 - 13 November 2015

    Adelaide, Australia

    ADVANCED BIOINFORMATICS WORKSHOP FOR EARLY CAREER RESEARCHERS https://tess.elixir-europe.org/events/advanced-bioinformatics-workshop-for-early-career-researchers this program is an intensive 5 day hands-on training course tutored by international experts, utilising the latest available software for the analysis of Next Generation Sequencing (NGS), Genomics and Metagenomics data. The course combines seminars and extensive hands-on practicals involving the analysis of a range of model and empirical datasets, focusing on current approaches in field-leading groups. 2015-11-09 09:00:00 UTC 2015-11-13 00:00:00 UTC University of Adelaide North Terrace Campus, Adelaide, Australia North Terrace Campus Adelaide Australia Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformaticslifescience
  • RNASeq using R

    30 November 2015

    Melbourne, Australia

    RNASeq using R https://tess.elixir-europe.org/events/rnaseq-using-r RNA-Seq using R 2015-11-30 09:00:00 UTC 2015-11-30 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computational biology Software engineering RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • EMBL-ABR Training Day: CyVerse

    11 April 2016

    Melbourne, Australia

    EMBL-ABR Training Day: CyVerse https://tess.elixir-europe.org/events/embl-abr-training-day-cyverse Through several hands-on demos and guided exercises, workshop participants will get a comprehensive look at CyVerse tools and services for large-scale data analysis. Use cases will draw on topics in genomics (including RNA-Seq, assembly, annotation, etc.) and lectures on theory will help you to plan, build, and critique your own experiments. 2016-04-11 09:00:00 UTC 2016-04-11 00:00:00 UTC VLSCI - University of Melbourne VLSCI, Melbourne, Australia VLSCI Melbourne Australia Data architecture, analysis and design Computational biology Data management Data submission, annotation and curation [] [] [] workshops_and_courses [] ABRBPABioinformatics
  • Data Interpretation and Reporting with R

    11 May 2016

    Brisbane, Australia

    Data Interpretation and Reporting with R https://tess.elixir-europe.org/events/data-interpretation-and-reporting-with-r This hands-on workshop will introduce users of the R software environment to the techniques involved in generating reproducible, dynamic data analyses and reports. Using literate programming approaches, participants will learn to build automated reusable reports in R. Practical exercises will include integration and manipulation of datasets, generation of summary statistics about a dataset, and how to produce high-quality tables and charts. Recommended participants Biologists and bioinformaticians wishing to structure and interpret data and generate dynamic reports using R. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Building dynamic reports for reproducible research with literate programming techniques Reformatting data and summarising and integrating datasets Generating high-quality graphic presentations of data Producing reusable scripts in R After this course you should be able to: Import tabular data files into R Use R to merge data from two or more files based on common fields Extract data from a table and summarise it in both text and graphical formats Create a knitR template that combines automated data analysis with free-form text interpretation 2016-05-11 09:00:00 UTC 2016-05-11 00:00:00 UTC University of Queensland University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRRQFAB
  • Experimental design and statistics

    17 May 2016

    Canberra, Australia

    Experimental design and statistics https://tess.elixir-europe.org/events/experimental-design-and-statistics This workshop will be run in the form of five 2-hour long sessions. There will be two sessions per week starting from mid-May. Preliminary dates are May 17th, 20th, 24th, 27th, and June 3rd. The times and venues are: Tue May 17 - 1 - 3pm, Slatyer Seminar Room Fri May 20 - 10am - 12pm, Gould Seminar Room Tue May 24 - 1 - 3pm, RN Robertson boardroom Fri May 27 - 10am - 12pm, Slatyer Seminar Room Fri Jun 3 - 10am - 12pm in STB-S1 at The Sciences Teaching Bldg. 2016-05-17 09:00:00 UTC 2016-05-17 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Differential Gene Expression Analysis with R (microarray and NGS)

    25 May 2016

    Brisbane, Australia

    Differential Gene Expression Analysis with R (microarray and NGS) https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRQFABR
  • RNA-Seq Data Analysis Using Galaxy

    26 May 2016

    Sydney, Australia

    RNA-Seq Data Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-26 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Westmead, Sydney, Australia Children’s Medical Research Institute, Westmead Sydney Australia Data architecture, analysis and design RNA-Seq [] [] [] workshops_and_courses [] BPAABRGalaxy
  • Variant Detection Using Galaxy

    27 May 2016

    Sydney, Australia

    Variant Detection Using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy Variant Detection using Galaxy is a one-day, hands-on workshop that will cover the concepts of detecting small variants, including SNPs and small indels, from next-generation sequencing data. You will use and compare a number of popular detection tools, visualise variants using a genome browser, and annotate SNPs for predicting biological effects. Course Outline -During this course you will learn about; -The tool and workflows of SNP and indel detection -Quality filtering and other techniques for improving SNP prediction accuracy -Comparison of variant detection software -the use of the Galaxy platform for variant detection analysis 2016-05-27 09:00:00 UTC 2016-05-27 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Sydney, Australia Children’s Medical Research Institute Sydney Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBPAGalaxyvariantcalling
  • Software carpentry introduction to programming with Python and use of Unix Shell and Git

    30 May - 1 June 2016

    Canberra, Australia

    Software carpentry introduction to programming with Python and use of Unix Shell and Git https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-python-and-use-of-unix-shell-and-git Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. This workshop is for novices and doesn't require any prior knowledge in Python, Git or Shell. The cost is $90 AUD to cover lunches and teas. It possible to pay with the GLC or bank transfer. Anybody interested please register no later than 22 May. 2016-05-30 09:00:00 UTC 2016-06-01 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • RNAseq using R

    1 - 2 June 2016

    Melbourne, Australia

    RNAseq using R https://tess.elixir-europe.org/events/rnaseq-using-r-632bdf76-dd3d-4c41-9e65-b175a2bb37e6 The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2016-06-01 09:00:00 UTC 2016-06-02 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • Introduction to Unix for life scientists

    2 June 2016

    Lab-14\, The University of Melbourne, Australia

    Introduction to Unix for life scientists https://tess.elixir-europe.org/events/introduction-to-unix-for-life-scientists Knowledge of the Unix operating system is fundamental to being productive on high performance computing systems such as those offered by VLSCI. This workshop will introduce life scientists to the fundamental Unix concepts through a series of hands-on exercises. 2016-06-02 09:00:00 UTC 2016-06-02 00:00:00 UTC VLSCI - University of Melbourne Lab-14 Seminar Space, VLSCI, Lab-14\, The University of Melbourne, Australia Lab-14 Seminar Space, VLSCI Lab-14\, The University of Melbourne Australia 3053 Bioinformatics Computational biology Software engineering [] [] [] workshops_and_courses [] BioinformaticslifescienceABRVLSCI
  • Introduction to the Genomics Virtual Laboratory and Galaxy for life scientists

    7 June 2016

    University of Melbourne, Australia

    Introduction to the Genomics Virtual Laboratory and Galaxy for life scientists https://tess.elixir-europe.org/events/introduction-to-the-genomics-virtual-laboratory-and-galaxy-for-life-scientists Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy's interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2016-06-07 09:00:00 UTC 2016-06-07 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Bioinformatics Computational biology Genomics Computer science [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Variant Calling with Galaxy and the Genomics Virtual Laboratory (beginners)

    8 June 2016

    The University of Melbourne, Australia

    Variant Calling with Galaxy and the Genomics Virtual Laboratory (beginners) https://tess.elixir-europe.org/events/variant-calling-with-galaxy-and-the-genomics-virtual-laboratory-beginners This tutorial covers the concepts of detecting small variants (SNVs and indels) in human genomic DNA using a small set of reads from chromosome 22. The tutorial is designed to introduce the tools, datatypes and workflow of variant detection. We will align reads to the genome, look for differences between reads and reference genome sequence, and filter the detected genomic variation manually to understand the computational basis of variant calling. 2016-06-08 09:00:00 UTC 2016-06-08 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, The University of Melbourne, Australia Lab-14, VLSCI The University of Melbourne Australia Genomics Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] BioinformaticsvariantcallingABRVLSCI
  • RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy

    14 June 2016

    University of Melbourne, Australia

    RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-the-genomics-virtual-laboratory-and-galaxy This tutorial covers the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2016-06-14 09:00:00 UTC 2016-06-14 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Genomics RNA-Seq Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] BioinformaticsABRVLSCI
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • Introduction to EBI bioinformatics resources

    22 June 2016

    University of Melbourne, Australia

    Introduction to EBI bioinformatics resources https://tess.elixir-europe.org/events/introduction-to-ebi-bioinformatics-resources This workshop introduces researchers to the rich (and freely available) resources of the European Bioinformatics Institute (EBI). We will walk through a variety of exemplary software tools and database resources, providing plenty of time for exploration. Primarily, this is targeted towards biologists with no, or very limited, bioinformatics experience to assist with ‘making a start’. 2016-06-22 09:00:00 UTC 2016-06-22 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • Bioinformatics & DNA Methylation Analysis

    22 June 2016

    Adelaide, Australia

    Bioinformatics & DNA Methylation Analysis https://tess.elixir-europe.org/events/bioinformatics-dna-methylation-analysis The Epigenetics Consortium of South Australia (EpiCSA) & the University of Adelaide's Bioinformatics Hub invite you to the second workshop of 2016, “Bioinformatics & DNA Methylation Analysis”. In this workshop, we will discuss Bioinformatics and Epigenetics analysis, and introduce computational processes to study DNA methylation. 2016-06-22 09:00:00 UTC 2016-06-22 00:00:00 UTC University of Adelaide Horace Lamb Building, University of Adelaide, Adelaide, Australia Horace Lamb Building, University of Adelaide Adelaide Australia Data architecture, analysis and design Epigenetics Bioinformatics [] [] [] workshops_and_courses [] ABR
  • Data Storytelling for Researchers: Research Communication & Visualisation Workshop

    25 - 26 June 2016

    Melbourne, Australia

    Data Storytelling for Researchers: Research Communication & Visualisation Workshop https://tess.elixir-europe.org/events/data-storytelling-for-researchers-research-communication-visualisation-workshop Two-day comprehensive introduction to the latest data mining & data visualisation tools for University of Melbourne researchers. 2016-06-25 09:00:00 UTC 2016-06-26 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Data management Data visualisation Data architecture, analysis and design Computer science [] [] [] workshops_and_courses [] ABR
  • AutoDesk Inventor Training

    29 - 30 June 2016

    Melbourne, Australia

    AutoDesk Inventor Training https://tess.elixir-europe.org/events/autodesk-inventor-training Autodesk Inventor training 2016-06-29 09:00:00 UTC 2016-06-30 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Software engineering Data visualisation Data architecture, analysis and design [] [] [] workshops_and_courses [] ABR
  • Introduction to Molecular Modelling & Visualisation for Life Sciences

    4 July 2016

    University of Melbourne, Australia

    Introduction to Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/introduction-to-molecular-modelling-visualisation-for-life-sciences This VLSCI workshop introduces beginners to molecular modelling and visualisation techniques using packages such as VMD and NAMD. After introductory talks, participants will be given practical exercises to visualise molecules as well as learn how to submit jobs to the VLSCI clusters. 2016-07-04 09:00:00 UTC 2016-07-04 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Computational chemistry Computational biology Molecular modelling Molecular dynamics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRVLSCIComputationalBiologyMolecularInteractions
  • Intermediate Molecular Modelling & Visualisation for Life Sciences

    6 July 2016

    University of Melbourne, Australia

    Intermediate Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/intermediate-molecular-modelling-visualisation-for-life-sciences This workshop is for the intermediate user who is already familiar with molecular modelling and submitting cluster jobs, and is interested in learning more advanced job submission and visualisation techniques. Topics include: advanced job submission scripts; data analysis; and molecular image and movie making. 2016-07-06 09:00:00 UTC 2016-07-06 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Data visualisation Computational chemistry Computational biology [] [] [] workshops_and_courses [] ABRVLSCIComputationalBiology
  • Software Carpentry with R COMBINE Workshop

    11 - 12 July 2016

    Brisbane, Australia

    Software Carpentry with R COMBINE Workshop https://tess.elixir-europe.org/events/software-carpentry-with-r-combine-workshop This Software Carpentry with R workshop is a tie-in to the 2016 UQ Winter School in Mathematical and Computational Biology. The workshop is being brought to you by COMBINE. Attendees must have registered for at least some part of the UQ Winter School. 2016-07-11 09:00:00 UTC 2016-07-12 00:00:00 UTC University of Queensland Brisbane, Australia Brisbane Australia Data architecture, analysis and design Computer science Bioinformatics [] [] [] workshops_and_courses [] ABRCOMBINEBioinformatics
  • 3-day Fundamentals in NGS Data Analysis

    12 - 14 July 2016

    Perth, Australia

    3-day Fundamentals in NGS Data Analysis https://tess.elixir-europe.org/events/3-day-fundamentals-in-ngs-data-analysis Fundamentals in NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. Workshop Outline Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis -de novo genome assembly 2016-07-12 09:00:00 UTC 2016-07-14 00:00:00 UTC Curtin University, Perth, Australia Curtin University Perth Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBPANGSIntroduction
  • Detecting Mutations with Short-Read Sequencing

    15 July 2016

    Canberra, Australia

    Detecting Mutations with Short-Read Sequencing https://tess.elixir-europe.org/events/detecting-mutations-with-short-read-sequencing Reed A. Cartwright, Arizona State University Studying the process of de novo mutation from deep-sequencing of related samples is a difficult task. Because de novos are rare, artifacts generated by experimental and biological error tend to be more common than true positives. While de novos can be identified through validation, this is a slow process. In order to estimate mutation rates on large datasets in an automated way, we need to develop new probabilistic models that can handle sources of false positives. In this talk I will be discussing new computational methods to detect de novo mutations and their application to three different systems: human trios, ciliate mutation accumulation experiments, and yellow box eucalyptus. TIC Techniques In Computational Genomics A community of researchers engaged in, or dependent on, computational analysis of genomic data Weekly seminars by volunteers Drop-in sessions/round-table discussions convened by the Genome Discovery Unit (GDU) Venue alternates between JCSMR and RSB, ANU. To be added to TIC email list please contact marcin.adamski@anu.edu.au 2016-07-15 09:00:00 UTC 2016-07-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Computational biology Bioinformatics [] [] [] meetings_and_conferences [] BioinformaticsABR
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