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33 events found

Scientific topics: Bioinformatics 

and

Keywords: eLearning  or Genome Mapping  or SystemsBiology  or Workflows  or Nextflow  or VLSCI 

  • Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012

    12 - 14 March 2012

    Hinxton, United Kingdom

    Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012 https://tess.elixir-europe.org/events/therapeutic-applications-of-computational-biology-and-chemistry-tacbac-2012 2012-03-12 00:00:00 UTC 2012-03-14 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom Drug metabolism Metabolomics Bioinformatics [] [] [] meetings_and_conferences [] BiotherapeuticsSystemsBiology
  • Introduction to Unix for life scientists

    2 June 2016

    Lab-14\, The University of Melbourne, Australia

    Introduction to Unix for life scientists https://tess.elixir-europe.org/events/introduction-to-unix-for-life-scientists Knowledge of the Unix operating system is fundamental to being productive on high performance computing systems such as those offered by VLSCI. This workshop will introduce life scientists to the fundamental Unix concepts through a series of hands-on exercises. 2016-06-02 09:00:00 UTC 2016-06-02 00:00:00 UTC VLSCI - University of Melbourne Lab-14 Seminar Space, VLSCI, Lab-14\, The University of Melbourne, Australia Lab-14 Seminar Space, VLSCI Lab-14\, The University of Melbourne Australia 3053 Bioinformatics Computational biology Software engineering [] [] [] workshops_and_courses [] BioinformaticslifescienceABRVLSCI
  • Introduction to High Performance Computing at VLSCI

    2 June 2016

    The University of Melbourne, Australia

    Introduction to High Performance Computing at VLSCI https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-at-vlsci Using High Performance Computing (HPC) resources such as VLSCI in an effective and efficient manner is key to modern research. This workshop will introduce you to HPC environments and assist you to get on with your research. 2016-06-02 09:00:00 UTC 2016-06-02 00:00:00 UTC Lab-14, VLSCI, The University of Melbourne, Australia Lab-14, VLSCI The University of Melbourne Australia Bioinformatics Computer science [] [] [] workshops_and_courses [] ABRVLSCIComputationalBiology
  • Introduction to the Genomics Virtual Laboratory and Galaxy for life scientists

    7 June 2016

    University of Melbourne, Australia

    Introduction to the Genomics Virtual Laboratory and Galaxy for life scientists https://tess.elixir-europe.org/events/introduction-to-the-genomics-virtual-laboratory-and-galaxy-for-life-scientists Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy's interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2016-06-07 09:00:00 UTC 2016-06-07 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Bioinformatics Computational biology Genomics Computer science [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Variant Calling with Galaxy and the Genomics Virtual Laboratory (beginners)

    8 June 2016

    The University of Melbourne, Australia

    Variant Calling with Galaxy and the Genomics Virtual Laboratory (beginners) https://tess.elixir-europe.org/events/variant-calling-with-galaxy-and-the-genomics-virtual-laboratory-beginners This tutorial covers the concepts of detecting small variants (SNVs and indels) in human genomic DNA using a small set of reads from chromosome 22. The tutorial is designed to introduce the tools, datatypes and workflow of variant detection. We will align reads to the genome, look for differences between reads and reference genome sequence, and filter the detected genomic variation manually to understand the computational basis of variant calling. 2016-06-08 09:00:00 UTC 2016-06-08 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, The University of Melbourne, Australia Lab-14, VLSCI The University of Melbourne Australia Genomics Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] BioinformaticsvariantcallingABRVLSCI
  • RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy

    14 June 2016

    University of Melbourne, Australia

    RNA-Seq Differential Gene Expression Analysis using the Genomics Virtual Laboratory and Galaxy https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-the-genomics-virtual-laboratory-and-galaxy This tutorial covers the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2016-06-14 09:00:00 UTC 2016-06-14 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Genomics RNA-Seq Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] BioinformaticsABRVLSCI
  • Introduction to EBI bioinformatics resources

    22 June 2016

    University of Melbourne, Australia

    Introduction to EBI bioinformatics resources https://tess.elixir-europe.org/events/introduction-to-ebi-bioinformatics-resources This workshop introduces researchers to the rich (and freely available) resources of the European Bioinformatics Institute (EBI). We will walk through a variety of exemplary software tools and database resources, providing plenty of time for exploration. Primarily, this is targeted towards biologists with no, or very limited, bioinformatics experience to assist with ‘making a start’. 2016-06-22 09:00:00 UTC 2016-06-22 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • Open source science with Git and GitHub

    2 August 2016

    University of Melbourne, Australia

    Open source science with Git and GitHub https://tess.elixir-europe.org/events/open-source-science-with-git-and-github Learn how to keep a record your code's evolution over time using the git version control system, used by companies and open-source projects worldwide. Git allows you to easily maintain snapshots of your code as you make changes, keep multiple parallel versions of your code, and collaborate with others. Follow up with an understanding of GitHub, the king of open-source project hosting. Learn how you can use git and GitHub to do code review and contribute to your favourite open source projects. 2016-08-02 09:00:00 UTC 2016-08-02 00:00:00 UTC VLSCI - University of Melbourne Lab-14, VLSCI, University of Melbourne, Australia Lab-14, VLSCI University of Melbourne Australia Bioinformatics Data management Data submission, annotation and curation [] [] [] workshops_and_courses [] ABRVLSCIlifescience
  • EMBL-ABR Non-model Organism Annotation and Curation Cycle, Resources & Tools

    24 October 2016

    Melbourne, Australia

    EMBL-ABR Non-model Organism Annotation and Curation Cycle, Resources & Tools https://tess.elixir-europe.org/events/embl-abr-non-model-organism-annotation-and-curation-cycle-resources-tools-14f0432e-559f-46df-8dff-29d80182b193 A part of the data life-cycle series, this workshop would cover existing non-model organism annotation and curation tools. The workshop would have interactive sessions to engage the attendees in a discussion surrounding the practical use of resources and tools for their projects. Towards the end of the workshop, attendees would have a good understanding of non model annotation and curation in terms of needs and use of existing resources. 2016-10-24 09:00:00 UTC 2016-10-24 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice workshop: data life-cycle – plants

    25 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice workshop: data life-cycle – plants https://tess.elixir-europe.org/events/embl-abr-best-practice-workshop-data-life-cycle-plants A part of the data life-cycle series, this workshop would cover best practice data life-cycle for plant researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for plant research domain in Australia. 2016-10-25 09:00:00 UTC 2016-10-25 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice workshop: data life-cycle - animals

    26 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice workshop: data life-cycle - animals https://tess.elixir-europe.org/events/embl-abr-best-practice-workshop-data-life-cycle-animals A part of the data life-cycle series, this workshop would cover best practice data life-cycle for animal researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for animal research domain in Australia. 2016-10-26 09:00:00 UTC 2016-10-26 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational chemistry Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice Workshop: data life-cycle – microbes

    27 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice Workshop: data life-cycle – microbes https://tess.elixir-europe.org/events/embl-abr-non-model-organism-annotation-and-curation-cycle-resources-tools A part of the data life-cycle series, this workshop would cover best practice data life-cycle for microbial researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for microbiology research domain in Australia. 2016-10-27 09:00:00 UTC 2016-10-27 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Computational biology Data management Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice Workshop: Data Life Cycle – Health

    28 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice Workshop: Data Life Cycle – Health https://tess.elixir-europe.org/events/embl-abr-best-practice-workshop-data-life-cycle-health A part of the data life-cycle series, this workshop would cover best practice data life-cycle for health researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for health research domain in Australia. 2016-10-28 09:00:00 UTC 2016-10-28 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • Introduction to the GVL and Galaxy

    7 November 2016

    Melbourne, Australia

    Introduction to the GVL and Galaxy https://tess.elixir-europe.org/events/introduction-to-the-gvl-and-galaxy Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. This beginners workshop hosted by VLSCI will introduce Galaxy's interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. This is a hands-on workshop and attendees should bring their own laptops. 2016-11-07 09:00:00 UTC 2016-11-07 00:00:00 UTC VLSCI - University of Melbourne Lab-14, Melbourne, Australia Lab-14 Melbourne Australia Bioinformatics Biomedical science Genomics [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • From Functional Genomics to Systems Biology

    12 - 15 November 2016

    Heidelberg, Germany

    From Functional Genomics to Systems Biology https://tess.elixir-europe.org/events/from-functional-genomics-to-systems-biology 2016-11-12 00:00:00 UTC 2016-11-15 00:00:00 UTC EMBL European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Systems biology Genomics Bioinformatics [] [] [] meetings_and_conferences [] SystemsBiologyOtherEventsISCB
  • EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis

    14 - 15 November 2016

    Melbourne, Australia

    EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis https://tess.elixir-europe.org/events/embl-abr-goblet-hands-on-training-rna-seq-data-analysis A one and a half days workshop that covers hands-on introduction to RNA-seq data analysis. The attendees would learn about the theory, tools and file formats involved right from raw RNA sequence to differentially expressed genes. The workshop would have alternating short lectures and hands-on exercises. 2016-11-14 09:00:00 UTC 2016-11-15 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data architecture, analysis and design Data management Computational biology Bioinformatics RNA-Seq [] [] [] meetings_and_conferences [] ABRVLSCIBioinformaticslifescience
  • Introduction to Molecular Modelling & Visualisation for Life Sciences

    29 November 2016

    Melbourne, Australia

    Introduction to Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/introduction-to-molecular-modelling-visualisation-for-life-sciences-667d4af2-9938-413c-a933-f1dc88712b2e This VLSCI workshop introduces beginners to molecular modelling and visualisation techniques using packages such as VMD and NAMD. The participants will be given practical exercises to visualise molecules as well as learn how to submit jobs to the VLSCI clusters. It is recommended that participants attend Introduction to High Performance Computing at VLSCI prior to this workshop. If a participant is not familiar with using the command line, he/she should also attend the Introduction to Unix workshop. Attendees are requested to bring their laptops with the following programs installed before arriving: VMD (http://www.ks.uiuc.edu/Research/vmd/) Putty (http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html) - only if they have Windows. 2016-11-29 09:00:00 UTC 2016-11-29 00:00:00 UTC VLSCI - University of Melbourne Lab-14, Melbourne, Australia Lab-14 Melbourne Australia Molecular modelling Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Intermediate Molecular Modelling & Visualisation for Life Sciences

    29 November 2016

    Melbourne, Australia

    Intermediate Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/intermediate-molecular-modelling-visualisation-for-life-sciences-e9e6da11-0063-4b6f-aca9-d869e351a110 This workshop is for the intermediate user who is already familiar with molecular modelling and submitting cluster jobs, and is interested in learning more advanced job submission and visualisation techniques. Topics include: advanced job submission scripts; data analysis; and molecular image and movie making. Participants are required to bring their own laptop computers with VMD or PyMol installed. VMD (http://www.ks.uiuc.edu/Research/vmd/) Putty (http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html) - only if the participant has Windows. 2016-11-29 09:00:00 UTC 2016-11-29 00:00:00 UTC VLSCI - University of Melbourne Lab-14, Melbourne, Australia Lab-14 Melbourne Australia Molecular modelling Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Introduction to Linux and Workflows for Biologists

    24 - 28 April 2017

    Edinburgh, United Kingdom

    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2017-04-24 00:00:00 UTC 2017-04-28 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Common Workflow Language with Michael Crusoe

    11 May 2017

    University of Melbourne, Australia

    Common Workflow Language with Michael Crusoe https://tess.elixir-europe.org/events/common-workflow-language-with-michael-crusoe 2017-05-11 12:00:00 UTC 2017-05-11 13:00:00 UTC Melbourne Bioinformatics FW Jones Theatre, Level 3, Medical Building , University of Melbourne, Australia FW Jones Theatre, Level 3, Medical Building University of Melbourne Australia Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] programmingWorkflowsBioinformatics
  • GOBLET/ELIXIR-EXCELERATE Workshop on e-learning

    21 November 2017

    Oeiras, Portugal

    Elixir node event
    GOBLET/ELIXIR-EXCELERATE Workshop on e-learning https://tess.elixir-europe.org/events/goblet-elixir-excelerate-workshop-on-e-learning GOBLET/ELIXIR-EXCELERATE Workshop on e-learning, Nov 21, 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-11-21 09:00:00 UTC 2017-11-21 17:00:00 UTC Instituto Gulbenkian, ELIXIR Portugal, GOBLET Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Bioinformatics Instituto Gulbenkian de Ciência [] Researchersteachers workshops_and_courses registration_of_interest TeachingeLearningEeLPbioinformatics
  • CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF

    28 February 2018

    CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF https://tess.elixir-europe.org/events/cwlexec-a-new-open-source-tool-to-run-cwl-workflows-on-lsf The [Common Workflow Language (CWL)](http://www.commonwl.org/) is a community-led specification for describing analysis _workflows_ and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and _high performance computing_ (HPC) environments. [IBM Spectrum LSF](https://www.ibm.com/us-en/marketplace/hpc-workload-management) (formerly IBM Platform LSF) is a complete workload management solution for demanding HPC environments. Featuring intelligent, policy-driven scheduling, it helps organizations accelerate research and design while controlling costs through superior resource utilization. Recognizing the popularity of CWL among LSF users, we introduce a new open source project **CWLEXEC** to support running CWL workflows on LSF. The project will feature smooth integration with LSF with high efficiency and scalability, self-healing of workflows, support user-specified submission options while keeping CWL definitions portable, and other benefits. * **Title**: CWLEXEC: A new open source tool to run CWL workflows on LSF * **Presenter:** Qingda Wang, Principal Architect, IBM Spectrum LSF Family Products and OEM * **Time**: 2018-02-28 14:00 GMT / 15:00 CET 2018-02-28 14:00:00 UTC 2018-02-28 15:00:00 UTC BioExcel Bioinformatics Genomics Workflows University of ManchesterBioExcel CoE Stian Soiland-Reyes http://ask.bioexcel.eu/ [] bioinformaticiansHPC users workshops_and_courses registration_of_interest WorkflowsCWLHPCLSF
  • Introduction to Linux and Workflows for Biologists

    14 - 18 May 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists-866df86c-a827-433d-9445-af7726bcf5a1 Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2018-05-14 09:00:00 UTC 2018-05-18 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Workflows Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1

    20 August 2018

    H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1 https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series #### Computational requirements for running the H3ABioNet GWAS workflows The first of a series of seven online lectures for Genome Wide Association Studies (GWAS) will cover the technical requirements for setting up a your computational environment for running the H3ABioNet GWAS workflows. In this inaugural lecture of the series, Prof. Hazelhurst will cover the the following topics: Installing and using Nextflow Installing and using Github Use of containers for packaging and running tools Pulling the GWAS pipeline from Github and running it As this lecture aims to provide attendees with an environment to the run the H3ABioNet GWAS workflow at their own pace, there are some preliminary software requirements: Either a Linux machine or an Apple running macOS Ideally you should have machine with at least 2-4 cores and 8GB of RAM. Java 8 Nextflow installed (see installation instructions at https://www.nextflow.io/) Python 3 Please also install either Docker OR the following dependencies using pip3: Pandas, Matplotlib, Openpyxl, SciPy, NumPy PLINK 1.9 [Please also refer to the following documentation to obtain the H3ABioNet GWAS workflow]: https://github.com/h3abionet/h3agwas/blob/master/README.md 2018-08-20 15:00:00 UTC 2018-08-20 16:30:00 UTC H3ABioNet Population genomics Genotyping experiment Computational biology Workflows GWAS study Bioinformatics H3ABioNet info@h3abionet.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chipAnyone who wants to learn more about GWAS workshops_and_courses [] NextflowDockerH3ABioNetGWASWorkflowsGenotyping array analysis bioinformaticsAfricaPopulation GenomicsReproducible ScienceH3Africa genotyping arrayHigh performance computingCloud computingGWAS workflowH3ABioNet GWAS 2018 Lecture Series
  • H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4

    29 August 2018

    H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4 https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-4 ### Quality control and its importance in GWAS In the fourth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS), the importance of doing good quality control for a GWAS will be discussed. The lecture will cover the types of errors one should control for, the specific bioinformatics tools used for quality control. Specific sample and SNP quality control steps that should be undertaken in a GWAS will be explored using specific examples. 2018-08-29 15:00:00 UTC 2018-08-29 16:30:00 UTC H3ABioNet Genotyping experiment GWAS study Computational biology Bioinformatics Population genomics Population genetics H3ABioNet info@h3abionet.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses [] Genome Wide Association StudiesGenotype callingH3Africa genotyping arrayAfrican populationsQuality Control for GWASSample Quality ControlSNP Quality ControlPopulation GenomicsGenotypingPLINK formatPrincipal Component AnalysisLow minor allele frequencyMissingnessGWAS workflowDiscordant Sex informationNextflowGenotyping rate callHeterozygosity rateRelated and duplicate individualsIdentity by DescentHardy Weinberg EquilibriumBioinformaticsH3ABioNet GWAS 2018 Lecture Series
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide)

    25 - 26 September 2019

    Adelaide, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow 2019-09-25 09:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000, Adelaide, Australia Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000 Adelaide Adelaide City Council Australia Bioinformatics University of Adelaide [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre)

    25 - 26 September 2019

    Perth, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-3e39d24f-3f89-496f-8d54-479324a373b9 2019-09-25 10:00:00 UTC 2019-09-26 14:00:00 UTC EMBL-ABR Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151, Perth, Australia Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151 Perth Australia Bioinformatics Australian Resources Research Centre [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-monash-university 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC, Melbourne, Australia L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC Melbourne Australia Bioinformatics Monash University [] [] [] [] SnakemakeNextflowbioinformatics
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-c253f254-38a1-4de9-b3cf-8abf216453db 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168, Melbourne, Australia Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168 Melbourne Australia Bioinformatics [] [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU)

    25 - 26 September 2019

    Townsville, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-b20f419e-63fe-4ad1-a65c-4afe6f988d4c 2019-09-25 12:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 002-107 James Cook University Townsville, QLD, Townsville, Australia Room 002-107 James Cook University Townsville, QLD Townsville Townsville City Australia Bioinformatics James Cook University [] [] [] [] bioinformaticsSnakemakeNextflow
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