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23 events found

Scientific topics: Bioinformatics 

and

Keywords: eLearning  or Genome Mapping  or SystemsBiology  or Workflows  or Nextflow  or SoftwareCarpentry 

  • Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012

    12 - 14 March 2012

    Hinxton, United Kingdom

    Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012 https://tess.elixir-europe.org/events/therapeutic-applications-of-computational-biology-and-chemistry-tacbac-2012 2012-03-12 00:00:00 UTC 2012-03-14 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom Drug metabolism Metabolomics Bioinformatics [] [] [] meetings_and_conferences [] BiotherapeuticsSystemsBiology
  • Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets

    11 - 13 April 2016

    Canberra, Australia

    Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-r-and-use-of-unix-shell-and-git-plus-data-carpentry-processing-and-visualization-of-genomic-datasets Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-11 09:00:00 UTC 2016-04-13 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Software carpentry introduction to programming with Python and use of Unix Shell and Git

    30 May - 1 June 2016

    Canberra, Australia

    Software carpentry introduction to programming with Python and use of Unix Shell and Git https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-python-and-use-of-unix-shell-and-git Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. This workshop is for novices and doesn't require any prior knowledge in Python, Git or Shell. The cost is $90 AUD to cover lunches and teas. It possible to pay with the GLC or bank transfer. Anybody interested please register no later than 22 May. 2016-05-30 09:00:00 UTC 2016-06-01 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Software Carpentry - R workshop - The University of Queensland

    11 - 12 July 2016

    Software Carpentry - R workshop - The University of Queensland https://tess.elixir-europe.org/events/software-carpentry-with-r-workshop Find out more at https://bio-swc-bne.github.io/2016-07-11-bne-R/ 2016-07-11 09:00:00 UTC 2016-07-12 00:00:00 UTC Software Carpentry R workshop - The University of Queensland R workshop - The University of Queensland Bioinformatics Biology [] [] [] workshops_and_courses [] ABRQCIFSoftwareCarpentryR
  • From Functional Genomics to Systems Biology

    12 - 15 November 2016

    Heidelberg, Germany

    From Functional Genomics to Systems Biology https://tess.elixir-europe.org/events/from-functional-genomics-to-systems-biology 2016-11-12 00:00:00 UTC 2016-11-15 00:00:00 UTC EMBL European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Systems biology Genomics Bioinformatics [] [] [] meetings_and_conferences [] SystemsBiologyOtherEventsISCB
  • Introduction to Linux and Workflows for Biologists

    24 - 28 April 2017

    Edinburgh, United Kingdom

    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2017-04-24 00:00:00 UTC 2017-04-28 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Common Workflow Language with Michael Crusoe

    11 May 2017

    University of Melbourne, Australia

    Common Workflow Language with Michael Crusoe https://tess.elixir-europe.org/events/common-workflow-language-with-michael-crusoe 2017-05-11 12:00:00 UTC 2017-05-11 13:00:00 UTC Melbourne Bioinformatics FW Jones Theatre, Level 3, Medical Building , University of Melbourne, Australia FW Jones Theatre, Level 3, Medical Building University of Melbourne Australia Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] programmingWorkflowsBioinformatics
  • Software Carpentry - Nathan Campus, Griffith University

    29 May 2017

    Nathan, Australia

    Software Carpentry - Nathan Campus, Griffith University https://tess.elixir-europe.org/events/software-carpentry-r-workshop-when Find out more at https://bio-swc-bne.github.io/2017-05-29-GriffithUni-R/ 2017-05-29 09:00:00 UTC 2017-05-29 00:00:00 UTC Software Carpentry Nathan Campus, Griffith University, Nathan, Australia Nathan Campus, Griffith University Nathan Brisbane City Australia Bioinformatics [] [] [] workshops_and_courses [] SoftwareCarpentry
  • GOBLET/ELIXIR-EXCELERATE Workshop on e-learning

    21 November 2017

    Oeiras, Portugal

    Elixir node event
    GOBLET/ELIXIR-EXCELERATE Workshop on e-learning https://tess.elixir-europe.org/events/goblet-elixir-excelerate-workshop-on-e-learning GOBLET/ELIXIR-EXCELERATE Workshop on e-learning, Nov 21, 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-11-21 09:00:00 UTC 2017-11-21 17:00:00 UTC Instituto Gulbenkian, ELIXIR Portugal, GOBLET Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Bioinformatics Instituto Gulbenkian de Ciência [] Researchersteachers workshops_and_courses registration_of_interest TeachingeLearningEeLPbioinformatics
  • Software Carpentry - University of Milano Bicocca

    22 - 23 February 2018

    Software Carpentry - University of Milano Bicocca https://tess.elixir-europe.org/events/software-carpentry-workshop-milano-italy Find out more at https://elixir-iib-training.github.io/2018-02-22-milan/ 2018-02-22 09:00:00 UTC 2018-02-23 00:00:00 UTC Software Carpentry University of Milano Bicocca University of Milano Bicocca Città Metropolitana di Milano 20126 Computer science Bioinformatics University of Milano-Bicocca, Italy elixir.ita.training@gmail.com [] Graduate StudentsResearchers 30 workshops_and_courses registration_of_interestfirst_come_first_served PythonUnix/LinuxGitSoftwareCarpentry
  • CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF

    28 February 2018

    CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF https://tess.elixir-europe.org/events/cwlexec-a-new-open-source-tool-to-run-cwl-workflows-on-lsf The [Common Workflow Language (CWL)](http://www.commonwl.org/) is a community-led specification for describing analysis _workflows_ and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and _high performance computing_ (HPC) environments. [IBM Spectrum LSF](https://www.ibm.com/us-en/marketplace/hpc-workload-management) (formerly IBM Platform LSF) is a complete workload management solution for demanding HPC environments. Featuring intelligent, policy-driven scheduling, it helps organizations accelerate research and design while controlling costs through superior resource utilization. Recognizing the popularity of CWL among LSF users, we introduce a new open source project **CWLEXEC** to support running CWL workflows on LSF. The project will feature smooth integration with LSF with high efficiency and scalability, self-healing of workflows, support user-specified submission options while keeping CWL definitions portable, and other benefits. * **Title**: CWLEXEC: A new open source tool to run CWL workflows on LSF * **Presenter:** Qingda Wang, Principal Architect, IBM Spectrum LSF Family Products and OEM * **Time**: 2018-02-28 14:00 GMT / 15:00 CET 2018-02-28 14:00:00 UTC 2018-02-28 15:00:00 UTC BioExcel Bioinformatics Genomics Workflows University of ManchesterBioExcel CoE Stian Soiland-Reyes http://ask.bioexcel.eu/ [] bioinformaticiansHPC users workshops_and_courses registration_of_interest WorkflowsCWLHPCLSF
  • Software Carpentry Workshop

    26 April - 3 May 2018

    Parkville, Australia

    Software Carpentry Workshop https://tess.elixir-europe.org/events/software-carpentry-workshop-10c78dfc-992c-446a-8685-5a7b483353a0 This workshop will be taught by some of COMBINE’s internationally certified Software Carpentry instructors and cover an introduction to the UNIX shell, version control using Git and Github, and reproducible analysis in R. We are offering a two-day workshop — Software Carpentry workshop in Melbourne, on the 26th of April and the 3rd of May. 2018-04-26 09:00:00 UTC 2018-05-03 17:00:00 UTC COMBINE Australia Seminar Room 1, WEHI 1G Royal Parade, Parkville, Australia Seminar Room 1, WEHI 1G Royal Parade Parkville Melbourne Australia Bioinformatics WEHI [] [] workshops_and_courses [] SoftwareCarpentryUnixGit R-programming
  • Introduction to Linux and Workflows for Biologists

    14 - 18 May 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists-866df86c-a827-433d-9445-af7726bcf5a1 Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2018-05-14 09:00:00 UTC 2018-05-18 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Workflows Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1

    20 August 2018

    H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1 https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series #### Computational requirements for running the H3ABioNet GWAS workflows The first of a series of seven online lectures for Genome Wide Association Studies (GWAS) will cover the technical requirements for setting up a your computational environment for running the H3ABioNet GWAS workflows. In this inaugural lecture of the series, Prof. Hazelhurst will cover the the following topics: Installing and using Nextflow Installing and using Github Use of containers for packaging and running tools Pulling the GWAS pipeline from Github and running it As this lecture aims to provide attendees with an environment to the run the H3ABioNet GWAS workflow at their own pace, there are some preliminary software requirements: Either a Linux machine or an Apple running macOS Ideally you should have machine with at least 2-4 cores and 8GB of RAM. Java 8 Nextflow installed (see installation instructions at https://www.nextflow.io/) Python 3 Please also install either Docker OR the following dependencies using pip3: Pandas, Matplotlib, Openpyxl, SciPy, NumPy PLINK 1.9 [Please also refer to the following documentation to obtain the H3ABioNet GWAS workflow]: https://github.com/h3abionet/h3agwas/blob/master/README.md 2018-08-20 15:00:00 UTC 2018-08-20 16:30:00 UTC H3ABioNet Population genomics Genotyping experiment Computational biology Workflows GWAS study Bioinformatics H3ABioNet info@h3abionet.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chipAnyone who wants to learn more about GWAS workshops_and_courses [] NextflowDockerH3ABioNetGWASWorkflowsGenotyping array analysis bioinformaticsAfricaPopulation GenomicsReproducible ScienceH3Africa genotyping arrayHigh performance computingCloud computingGWAS workflowH3ABioNet GWAS 2018 Lecture Series
  • H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4

    29 August 2018

    H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4 https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-4 ### Quality control and its importance in GWAS In the fourth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS), the importance of doing good quality control for a GWAS will be discussed. The lecture will cover the types of errors one should control for, the specific bioinformatics tools used for quality control. Specific sample and SNP quality control steps that should be undertaken in a GWAS will be explored using specific examples. 2018-08-29 15:00:00 UTC 2018-08-29 16:30:00 UTC H3ABioNet Genotyping experiment GWAS study Computational biology Bioinformatics Population genomics Population genetics H3ABioNet info@h3abionet.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses [] Genome Wide Association StudiesGenotype callingH3Africa genotyping arrayAfrican populationsQuality Control for GWASSample Quality ControlSNP Quality ControlPopulation GenomicsGenotypingPLINK formatPrincipal Component AnalysisLow minor allele frequencyMissingnessGWAS workflowDiscordant Sex informationNextflowGenotyping rate callHeterozygosity rateRelated and duplicate individualsIdentity by DescentHardy Weinberg EquilibriumBioinformaticsH3ABioNet GWAS 2018 Lecture Series
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide)

    25 - 26 September 2019

    Adelaide, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow 2019-09-25 09:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000, Adelaide, Australia Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000 Adelaide Adelaide City Council Australia Bioinformatics University of Adelaide [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre)

    25 - 26 September 2019

    Perth, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-3e39d24f-3f89-496f-8d54-479324a373b9 2019-09-25 10:00:00 UTC 2019-09-26 14:00:00 UTC EMBL-ABR Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151, Perth, Australia Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151 Perth Australia Bioinformatics Australian Resources Research Centre [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-monash-university 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC, Melbourne, Australia L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC Melbourne Australia Bioinformatics Monash University [] [] [] [] SnakemakeNextflowbioinformatics
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-c253f254-38a1-4de9-b3cf-8abf216453db 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168, Melbourne, Australia Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168 Melbourne Australia Bioinformatics [] [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU)

    25 - 26 September 2019

    Townsville, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-b20f419e-63fe-4ad1-a65c-4afe6f988d4c 2019-09-25 12:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 002-107 James Cook University Townsville, QLD, Townsville, Australia Room 002-107 James Cook University Townsville, QLD Townsville Townsville City Australia Bioinformatics James Cook University [] [] [] [] bioinformaticsSnakemakeNextflow
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UNSW)

    25 - 26 September 2019

    New South Wales , Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UNSW) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-77dd69fe-1580-410f-86bc-adba3f78eabf 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Squarehouse 217 Kensington Campus (Lower campus near Anzac Parade) UNSW NSW, New South Wales , Australia Squarehouse 217 Kensington Campus (Lower campus near Anzac Parade) UNSW NSW New South Wales Randwick City Council Australia Bioinformatics The University of Sydney [] [] [] [] BioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ)

    25 - 26 September 2019

    Saint Lucia, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-826ee571-b240-4f58-afb8-fd46491db6b1 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Room 505 Axon Building (#47) University of Queensland St Lucia, QLD, Saint Lucia, Australia Room 505 Axon Building (#47) University of Queensland St Lucia, QLD Saint Lucia Australia Bioinformatics University of Queensland [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-23941db7-c610-4aaf-8789-f55c938edb0d 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053, Melbourne, Australia Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053 Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsSnakemakeNextflow
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