Keywords: Transcriptomics or • New developments in techn... or drugdiscovery or Tumor biology and genetics or structural biology or polyploidy for plant and an... or Disease maps or Open Targets or bioinformatics or Genomics
GOBLET/ELIXIR-EXCELERATE Workshop on e-learning
21 November 2017
Oeiras, PortugalGOBLET/ELIXIR-EXCELERATE Workshop on e-learning https://elixir.mf.uni-lj.si/course/view.php?id=28 https://tess.elixir-europe.org/events/goblet-elixir-excelerate-workshop-on-e-learning GOBLET/ELIXIR-EXCELERATE Workshop on e-learning, Nov 21, 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-11-21 09:00:00 UTC 2017-11-21 17:00:00 UTC Instituto Gulbenkian, ELIXIR Portugal, GOBLET Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Bioinformatics Instituto Gulbenkian de Ciência  Researchersteachers workshops_and_courses registration_of_interest TeachingeLearningEeLPbioinformatics
Genome assembly and annotation course 4
24 - 28 September 2018
Montferrier-sur-Lez (Montpellier area), FranceGenome assembly and annotation course 4 https://elixir.mf.uni-lj.si/course/view.php?id=33 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-4 ELIXIR Genome assembly and annotation course 4, Sept 24-28 2018 at the CIRAD, Montpellier, France 2018-09-24 09:00:00 UTC 2018-09-28 17:00:00 UTC ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI Cirad, 389, Avenue Agropolis, Montferrier-sur-Lez (Montpellier area), France Cirad, 389, Avenue Agropolis Montferrier-sur-Lez (Montpellier area) Hérault France Genomics CIRAD email@example.com  life scientistsResearchersPhD students 25  registration_of_interest Genomics AssemblyTrainingeLearningEeLP
9 - 13 September 2019
Oeiras, PortugalComputational PANGenomics http://gtpb.igc.gulbenkian.pt/bicourses/2019/CPANG19/index.html https://tess.elixir-europe.org/events/computational-pangenomics Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation as the number of sequenced genomes grows. In particular, they tend to bias us away from the observation of variation in the genomes we study. A general solution to this problem is to use a pangenome that incorporates both sequence and variation from many individuals as our reference system. This pangenome is naturally modelled as a graph with annotations and can provide all the functionality traditionally provided by linear reference genomes. Unlike linear reference genomes, a pangenome readily incorporates both small and large variation, allowing bias-free genotyping at known alleles. In this course, we will explore the use of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types. Such techniques will aid any researcher working on organisms of high genetic diversity or on organisms lacking a high-quality reference genome. This course targets all researchers interested in learning about an exciting paradigm shift in computational genomics. 2019-09-09 09:30:00 UTC 2019-09-13 17:00:00 UTC The Gulbenkian Training Programme in Bioinformatics Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal 2781-901 Instituto Gulbenkian de Ciência, Biodata.pt - Elixir's portuguese node of the european project firstname.lastname@example.org  This course is oriented towards biologists and bioinformaticians. The course will be of particular interest to researchers investigating organisms without a reference genome or populations featuring high levels of genetic diversity. 20 workshops_and_courses registration_of_interest BioinformaticsGenomics
12 November 2019
Oeiras, PortugalPlant Phenotyping https://biodata.pt/event/plant-phenotyping-genotyping-data-management-workshop https://tess.elixir-europe.org/events/plant-phenotyping Plant phenotyping research has gone through a data revolution with the automation of plant phenotyping platforms, making it critical to adopt good data management practices in order the exploit the torrent of data to its full potential. Concretely, data should be published in a Findable, Accessible, Interoperable and Reusable (FAIR) way in order to enable the integration of data from disparate sources and the discovery of new knowledge. Yet, this is one of the more challenging domains to standardize, as it is extremely heterogeneous in terms of experimental settings and types of data. The ELIXIR infrastructure, with prominent contributions from BioData.pt (the Portuguese ELIXIR node) has been tackling this challenge at the European and international level, by developing standards and services to enable the management of plant phenotype-genotype data and its publication in accordance with the FAIR principles. In this workshop, we will be presenting the outcomes of this work from the ELIXIR plant sciences community, featuring a keynote from one of its key members, Dr. Anne-Françoise Adam-Blondon (ELIXIR-France), a detailed tutorial about the design and usage of the MIAPPE (Minimum Information About Plant Phenotyping Experiments), a hands-on data annotation and publication session, and a demonstration of ELIXIR’s Plant Data Search service. 2019-11-12 14:00:00 UTC 2019-11-12 19:00:00 UTC ITQB Instituto de Tecnologia Química e Biológica António Xavier, Oeiras, Portugal Instituto de Tecnologia Química e Biológica António Xavier Oeiras Lisbon Portugal 2775-412 Oeiras ITQB NOVA - Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de LisboaBiodata.pt - Elixir's portuguese node of the european projec  Life Science ResearchersBiologists, Genomicists, Computer Scientistsplant researchers workshops_and_courses  Plant PhenotypingGenotypingdata managementbioinformatics
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