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  • Biological Imaging Data Management for Facility Managers

    13 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Facility Managers https://tess.elixir-europe.org/events/biological-imaging-data-management-for-facility-managers [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how Facility Managers can use it to manage users, groups, and their microscopy, HCS and digital pathology data. Help pages on 'Using OMERO for Facility Managers' can be found [here](http://help.openmicroscopy.org/facility-manager.html). This course is organized alongside a one day course on Biological Imaging Data Management for Life Scientists. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769278). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20facility%20managers_bioinfo-omerofm_13.07.2016_1769270&CourseName=Biological%20imaging%20data%20management%20for%20facility%20managers&CourseDate=13.07.2016&CourseDuration=1&EventID=1769270).'' 2016-07-13 08:30:00 UTC 2016-07-13 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Facility Managers using orwanting to useOMERO for image data managementGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Life Scientists

    14 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists-eb567418-c2a4-45dc-8363-1778a4bc4b13 [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of analysis tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Management for Facility Managers. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769270). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20life%20scientists_bioinfo-omerols_14.07.2016_1769278&CourseName=Biological%20imaging%20data%20management%20for%20life%20scientists&CourseDate=14.07.2016&CourseDuration=1&EventID=1769278).'' 2016-07-14 08:30:00 UTC 2016-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    3 March 2017

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-93225941-4ff0-4ea8-a58b-e80f50e1433b The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1968864&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2017-03-03 09:30:00 UTC 2017-03-03 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    8 September 2017

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-78c9c268-5a46-4613-a3bd-3cb535de682a The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2195183&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2017-09-08 08:30:00 UTC 2017-09-08 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Life Scientists

    7 December 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of processing tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Processing for Data Scientists. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/event/2280783). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2239247&course-title=Biological%20imaging%20data%20management%20for%20life%20scientists).'' 2017-12-07 09:30:00 UTC 2017-12-07 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Processing for Data Scientists

    8 December 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Processing for Data Scientists https://tess.elixir-europe.org/events/biological-imaging-data-processing-for-data-scientists [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to transition from manual data processing to automated processing workflows. We will introduce how to write applications against the OMERO API, how to integrate a variety of processing tools with OMERO and how to automatically generate output ready for publication. This course is organized alongside a one day course on Biological Imaging Data Management for Life Scientists. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/event/2239247). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2280783&course-title=Biological%20imaging%20data%20management%20for%20data%20scientists).'' 2017-12-08 09:30:00 UTC 2017-12-08 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Life scientists with programming skillsbioinformaticians and image analysts.Anybody interested in using Jupyter and OMEROGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to using the Ensembl Genome Browser

    12 March 2018

    Cambridge, United Kingdom

    Elixir node event
    Introduction to using the Ensembl Genome Browser https://tess.elixir-europe.org/events/introduction-to-using-the-ensembl-genome-browser The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2279657&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2018-03-12 09:30:00 UTC 2018-03-12 12:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    20 July 2018

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-4e8fa566-d250-4e95-9309-42a094810456 The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2526393&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2018-07-20 08:30:00 UTC 2018-07-20 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    12 November 2018

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-b42db759-b556-4b79-9941-512d1189c6c7 The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2664356&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2018-11-12 09:30:00 UTC 2018-11-12 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    10 April 2019

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-2d9e2b70-9d6f-48e2-828c-f60c49897a26 The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2827337&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2019-04-10 08:30:00 UTC 2019-04-10 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    27 November 2019

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-61d56b3e-79d2-49c2-bf4d-5b80e40bb5eb The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3089173&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2019-11-27 09:30:00 UTC 2019-11-27 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser (ONLINE TRAINING)

    1 September 2020

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser (ONLINE TRAINING) https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-467135ab-7028-4d4f-8a24-bbffa5548b3b PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3351117&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2020-09-01 08:30:00 UTC 2020-09-01 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK

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