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  • Nuclear structure and dynamics

    28 September - 2 October 2011

    LIsle sur la Sorgue, France

    Nuclear structure and dynamics https://tess.elixir-europe.org/events/nuclear-structure-and-dynamics 2011-09-28 09:00:00 UTC 2011-10-02 00:00:00 UTC EMBO Domaine de Mousquety, LIsle sur la Sorgue, France Domaine de Mousquety LIsle sur la Sorgue France Genomics [] [] [] meetings_and_conferences [] SystemsBiologyTranscriptomics
  • Quality Control – From Molecules to Organelles

    19 September - 22 October 2012

    Heidelberg, Germany

    Quality Control – From Molecules to Organelles https://tess.elixir-europe.org/events/quality-control-from-molecules-to-organelles 2012-09-19 00:00:00 UTC 2012-10-22 00:00:00 UTC EMBL Heidelberg European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Proteomics Genomics [] [] [] meetings_and_conferences [] Transcriptomics
  • The Complex Life of mRNA

    8 - 11 October 2012

    Heidelberg, Germany

    The Complex Life of mRNA https://tess.elixir-europe.org/events/the-complex-life-of-mrna-9b8c002c-8adf-488c-bec3-d5470bcb09cc 2012-10-08 00:00:00 UTC 2012-10-11 00:00:00 UTC EMBL Heidelberg European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Genomics [] [] [] meetings_and_conferences [] Transcriptomics
  • Cybertaxonomy and biodiversity information with special emphasis on geospatial related data (Novice or Advanced Training)

    1 December 2012

    Tervuren, Belgium

    Cybertaxonomy and biodiversity information with special emphasis on geospatial related data (Novice or Advanced Training) https://tess.elixir-europe.org/events/cybertaxonomy-and-biodiversity-information-with-special-emphasis-on-geospatial-related-data-novice-or-advanced-training 2012-12-01 00:00:00 UTC 2012-12-01 00:00:00 UTC Distributed European School of Taxonomy Royal Museum for Central Africa, Tervuren, Belgium Royal Museum for Central Africa Tervuren Belgium Bioinformatics [] [] [] workshops_and_courses [] TranscriptomicsBiodiversityInformation
  • The Complex Life of mRNA

    5 - 8 October 2014

    Heidelberg, Germany

    The Complex Life of mRNA https://tess.elixir-europe.org/events/the-complex-life-of-mrna 2014-10-05 01:00:00 UTC 2014-10-08 01:00:00 UTC EMBO/EMBL European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Genomics [] [] [] meetings_and_conferences [] Transcriptomics
  • Large-scale analytical workflows on the cloud using Galaxy and Globus

    16 November 2016

    Large-scale analytical workflows on the cloud using Galaxy and Globus https://tess.elixir-europe.org/events/large-scale-analytical-workflows-on-the-cloud-using-galaxy-and-globus We would like to invite you to attend the 8th webinar in BioExcel’s webinar series on computational methods and applications for biomolecular research, which will take place on 16th November 2016: Presenter: Ravi Madduri (introduction by Stian Soiland-Reyes) When: Wed 16th November 2016 16:00 CET (2016-11-16 15:00 UTC) Registration: Free In this BioExcel webinar we are delighted to have Ravi Madduri from Argonne National Laboratory and University of Chicago present Globus Genomics, a system developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data, combining Galaxy workflows with cloud technologies like Amazon EC2 and Globus File Transfer. This system achieves a high degree of end-to-end automation that encompasses every stage of data analysis including initial data retrieval from remote sequencing centers or storage (via the Globus file transfer system); specification, configuration, and reuse of multi-step processing pipelines (via the Galaxy workflow system); creation of custom Amazon Machine Images and on-demand resource acquisition via a specialized elastic provisioner (on Amazon EC2); and efficient scheduling of these pipelines over many processors (via the HTCondor scheduler). The system allows biomedical researchers to perform rapid analysis of large NGS datasets in a fully automated manner, without software installation or a need for any local computing infrastructure. Ravi’s work is part of the BD2K center Big Data for Discovery Science, building infrastructure for reproducible workflows using minids (minimal viable identifiers), analyzing data at scale using identified Docker containers, publish results in to Globus Publication services thus providing an end-to-end framework for reproducible research. In this BioExcel webinar, Ravi will present Globus Genomics and the technologies used to achieve large-scale analytical Galaxy workflows on the cloud. We think this will be of interest not just for the genomics community, but for any scientific workflow users who need to consider distributed deployments, data management and scalability. 2016-11-16 15:00:00 UTC 2016-11-16 16:00:00 UTC BioExcel Whole genome sequencing High-throughput sequencing Genomics Workflows University of ManchesterUniversity of ChicagoArgonne National Laboratory Please register at https://attendee.gotowebinar.com/register/5808939110698431491. You will then receive an email with details of how you can connect to the webinar. [] bioinformaticianssoftware engineersGalaxy usersCloud users workshops_and_courses first_come_first_served CloudGalaxyGlobusNGSNext generation sequencing data analysis
  • Revolutionizing Next-Generation Sequencing (2nd edition)

    20 - 21 March 2017

    Antwerpen, Belgium

    Elixir node event
    Revolutionizing Next-Generation Sequencing (2nd edition) https://tess.elixir-europe.org/events/revolutionizing-next-generation-sequencing-2nd-edition Revolutionizing Next-Generation Sequencing (2nd edition) A VIB Tools & Technologies Conference Enabled by better cost-performance curves and novel technology developments, Next-Generation Sequencing technologies keep on pushing the boundaries of our scientific knowledge. The NGS-field is still expanding and to take advantage of new opportunities offered by these technologies in life sciences, VIB Conferences will host the second edition of Revolutionizing Next-Generation Sequencing: Tools and Technologies. After a sold-out 2015 edition, RNGS17 will look at emerging tools and approaches for: Large-scale Sequencing Applications for Current and Emerging Next-Generation Sequencing Platforms Single-Cell Genomics Epigenetics Next-gen Transcriptomics technologies Ultra-long reads and Assembly Computational genomics and data analysis In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions, the conference dinner and our ‘Meet the Expert’ session! You can find more info about the sold out first edition in our event archive. 2017-03-20 08:45:00 UTC 2017-03-21 17:45:00 UTC VIB Conferences Koningin Astridplein 20, 20, Koningin Astridplein, Antwerpen, Belgium Koningin Astridplein 20, 20, Koningin Astridplein Antwerpen Anwerpen Belgium 2018 Epigenomics VIB www.vibconferences.be conferences@vib.be Bluebee Covaris Perkin Elmer SeqLL BD Bioké Diagenode Labcyte Multiplicom Takara Westburg To see all our sponsors please visit www.vibconferences.be PhD'sAcademicsPost-DocsIndustry meetings_and_conferences first_come_first_served Structural genomicsPreclinical and clinical studiesclinical sequencingPopulation geneticsSingle Cell GenomicsDNA-seqSequencingApplied NGSEpigenomicsGenome structureGenome MappingTranscriptomicsData Analysis
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • Regulatory Oxylipins

    1 - 4 April 2019

    Gent, Belgium

    Elixir node event
    Regulatory Oxylipins https://tess.elixir-europe.org/events/regulatory-oxylipins-661da9dc-2159-4a34-8809-7851dfbe0b8a Oxylipins, from plants and other organisms, form a constantly growing group of signalling molecules that comprise oxygenated fatty acids and their metabolites. The most renowned regulatory oxylipins are undoubtedly the jasmonates, which, following their discovery in the 1960s, became recognized as regulators of defence, floral organ development and fertility, as growth inhibitors and modulators of senescence, and as elicitors of specialized metabolism in numerous plant species. As such, the jasmonates currently belong to an elite group of heavily investigated phytohormones. Over the last decade, the understanding of biosynthesis, metabolism, and action of regulatory oxylipins has greatly advanced. The ROXY2019 meeting wishes to bring together the international community and leading researchers in the field. Thereby it aims to provide a timely and exciting forum to present and discuss the recent advances and expertise on the study of these molecules that are so crucial for plant growth, development, metabolism, and interaction with the environment. There will be seven plenary sessions that, through combining lectures from invited speakers and short talks on selected abstracts and posters, will highlight the various aspects involved in Regulatory Oxylipin research. These sessions cover the following major themes: Regulatory oxylipins in emerging model systems and non-plant systems, Biochemistry and structural biology, Control of growth and defence, Control of Metabolism, Reproduction, Jasmonate signalling mechanisms and Long-distance signalling, Ecology. We look forward to your contributions to make this an exciting conference. See you in Gent! The organizers Alain Goossens and Ted Farmer Poster information Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation 2019-04-01 09:00:00 UTC 2019-04-04 17:00:00 UTC VIB Conferences - Alain Goossens & Ted Farmer Ghent University - Aula, 9, Voldersstraat, Gent, Belgium Ghent University - Aula, 9, Voldersstraat Gent Oost-Vlaanderen Belgium 9000 [] conferences@vib.be Faculty of ScienceJournal of Experimental BotanyPCP (Plant & Cell Physiology)The Plant CellThe Plant Journal [] [] [] Regulatory OxylipinsBiochemistrystructural biologyMetabolismreproductionJasmonate signallingEcology
  • Nextflow 2019

    17 - 20 September 2019

    Barcelona, Spain

    Elixir node event
    Nextflow 2019 https://tess.elixir-europe.org/events/nextflow-2019 **Create. Deploy. Share.** Nextflow is a popular workflow management solution that allows scientists and engineers to create data-driven applications which can be effortlessly scaled across clusters and clouds. It simplifies the writing of complex distributed computational workflows in a portable and replicable manner. Nextflow allows the seamless parallelization and deployment of any existing application with minimal development and maintenance overhead, irrespective of the original programming language. Containerisation technologies and inbuilt executors for the most popular cluster systems (SLURM, PBS, UGE, LSF, etc) and cloud infrastructure (AWS Batch & Google Cloud Platform) ensures unrivalled deployment. The built-in support for code repositories provides code sharing for the collaborations that matter most and enable your applications to touch the world. But most of all, the active community of that has formed around Nextflow provides inspirational, best-in-class technical examples from global leaders in workflow deployment as well as lasting relationships in a growing community. __Nextflow Training - 17th and 18th September 2019__ The week kicks off with a two-day intensive workshop intended for Nextflow beginners and intermediate users. In these practical sessions, participants learn about Nextflow technology starting from basic through to advanced concepts, with the expectation they will acquire the proficiency to develop and deploy their own workflows. The workshop will be provided across 14 topics including processes, operators, executors, containers and best practices. A GitHub repository will be provided with all the necessary material and software as well as AWS cloud instances for running the deployments in the relevant practical sessions. The audience is expected to have at least some prior basic command line experience. __Nextflow Camp - 19th and 20th September 2019__ Nextflow Camp brings together the Nextflow community of developers and users to discuss the state of Nextflow technology, the latest developments and tackle the open questions in a collaborative manner. Each day is split between talks from Nextflow experts and tutorial breakout sessions where participants get a flavour for the possibilities for their own applications. We hope to see you in Barcelona in September! 2019-09-17 09:00:00 UTC 2019-09-20 18:00:00 UTC Paolo Di Tommaso PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader, Barcelona, Spain PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader Barcelona Barcelona Spain 08003 Centre for Genomic Regulation training@crg.eu AWS Bioinformaticians 50 meetings_and_conferencesworkshops_and_courses first_come_first_served NextflowWorkflowsContainersCloud ComputingHPC
  • 5th Prague Autumn School - RNASeq Data Analysis Workshop

    7 - 11 October 2019

    Prague, Czechia

    Elixir node event
    5th Prague Autumn School - RNASeq Data Analysis Workshop https://tess.elixir-europe.org/events/5th-prague-autumn-school-rnaseq-data-analysis-workshop 2019-10-07 08:30:00 UTC 2019-10-11 17:00:00 UTC Institute of Molecular Genetics CAS, SEQme s.r.o. Conference Centre, Institute of Molecular Genetics, Videnska 1083, 14220 Prague, Czech Republic, Prague, Czechia Conference Centre, Institute of Molecular Genetics, Videnska 1083, 14220 Prague, Czech Republic Prague Hlavní město Praha Czechia 14220 Institute of Molecular Genetics CASSEQme s.r.o. [] Life Science Researchers 22 workshops_and_courses first_come_first_served Next generation sequencing data analysisnext generation sequencing RNA-Seq
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
  • Workshop: Oxford Nanopore long reads - de novo assembly

    6 - 7 November 2019

    Prague, Czechia

    Elixir node event
    Workshop: Oxford Nanopore long reads - de novo assembly https://tess.elixir-europe.org/events/workshop-oxford-nanopore-long-reads-de-novo-assembly 2019-11-06 08:30:00 UTC 2019-11-07 17:00:00 UTC Institute of Molecular Genetics CAS, SEQme s.r.o. Institute of Molecular Genetics, Vídeňská 1083, 1083, Prague 4, Prague, Czechia Institute of Molecular Genetics, Vídeňská 1083, 1083, Prague 4 Prague Hlavní město Praha Czechia 14220 Institute of Molecular Genetics, CASSEQme s.r.o. [] Life Science Researchers 23 workshops_and_courses first_come_first_served Next generation sequencing data analysis
  • Advances in Computational Biology Conference 2019

    28 - 29 November 2019

    Barcelona, Spain

    Elixir node event
    Advances in Computational Biology Conference 2019 https://tess.elixir-europe.org/events/advances-in-computational-biology-conference-2019 The first **Advances in Computational Biology conference – _Fostering collaboration among women scientists_** will bring together researchers working on systems biology, omics technologies, artificial intelligence and high-performance computing with applications to biology from both the public and private sectors. One of the main purposes of the conference is to **visualize and promote the research done by women scientists** and for this reason, all presenters will be women, although the conference is open to everyone. We want to create a space to foster collaborations between scientists, providing an excellent opportunity to share ideas and build research networks. Topics included: - **Learning from Biological Sequences**: population genomics, evolutionary genomics, systems biology, transcriptomics, sequence analysis - **When Computational Biology meets Medicine**: biomedical applications, mutational landscapes, clinical genomics - **Machines Speeding up Research**: high performance computing, machine learning in the life sciences, imaging data analysis, dynamic simulations and algorithm development Key dates: - Open registration: May 6th, 2019 - Abstract submission opens: May 6th, 2019 - **Abstract submission deadline: July 1st, 2019** - Early bird registration deadline: September 15th, 2019 - Registration deadline: November 1st, 2019 - AdvCompBio Conference: November 28th - 29th, 2019 The programme will include poster and oral presentations, as well as keynotes from leading scientists in the computational biology and high-performance computing fields. The keynote speakers of the conference are: **Christine Orengo**, group leader of Orengo Group at University College London, **Natasa Przulj**, group leader of the Life Sciences – Integrative Computational Network Biology at the Barcelona Supercomputing Center and **Marie-Christine Sawley**, director of the Exascale Lab at Intel. The confirmed chairs of the conference are: **Alison Kennedy**, director of the STFC Hartree Centre, **Janet Kelso**, group leader of the Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology, and **Nuria Lopez-Bigas**, leader of the Biomedical Genomics Research Group at the Institute for Research in Biomedicine Barcelona. Furthermore, the participants will have the opportunity to interact personally with female leaders in the fields of IT, academic research and politics that support the conference. The conference is organised by the Bioinfo4Women programme from the Barcelona Supercomputing Center (BSC-CNS) with the collaboration of IMIM-UPF Research Programme on Biomedical Informatics (GRIB), the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Universitat Politècnica de Catalunya (UPC). It is an affiliate conference of the International Society for Computational Biology (ISCB). 2019-11-28 09:00:00 UTC 2019-11-29 17:00:00 UTC La Pedrera, 92, Passeig de Gràcia, Barcelona, Spain La Pedrera, 92, Passeig de Gràcia Barcelona Barcelona Spain Imaging Machine learning Computational biology Computer science Biomedical science Sequence analysis Transcriptomics Evolutionary biology Population genomics Omics Systems biology Bioinformatics [] [] ResearchersPhD studentsPostdoctoral studentsComputer scienceComputational biologistsbioinformaticians meetings_and_conferences [] HPCBioinformaticsComputational BiologyArtificial IntelligenceGenomicsTranscriptomicsSystems biologyPopulation GenomicsEvolutinary genomicsSequence Analysisbiomedical applicationsmutational landscapesclinical genomicsImagingdynamic simulationsalgorithmsmachine learning
  • R for data science

    31 March - 3 April 2020

    Liverpool, United Kingdom

    R for data science https://tess.elixir-europe.org/events/r-for-data-science The course covered content for these learning objectives: To write your own custom functions To use for loops, apply functions and if statements To analyse large matrices of data in a semi-automated way To normalise data To quantify and correct batch effect To undertake the most common clustering algorithms including k-means and hierarchical To perform variable selection and present these results in different plots including heatmaps To do 2-way ANOVA To undertake multivariate modelling A brief introduction to machine learning. The course included brief theoretical introductions followed by hands on exercises based on real life research examples. 2020-03-31 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Statistics and probability Bioinformatics University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] 20 workshops_and_courses registration_of_interest R ProgrammingStatistical-model Statistics Pre-processingTranscriptomicsMetabolomicsProteomics
  • A Tidy Transcriptomics introduction to RNA-Seq analyses

    27 July 2020

    A Tidy Transcriptomics introduction to RNA-Seq analyses https://tess.elixir-europe.org/events/a-tidy-transcriptomics-introduction-to-rna-seq-analyses This workshop will present how to perform analysis of RNA sequencing data following the tidy data paradigm. The tidy data paradigm provides a standard way to organise data values within a dataset, where each variable is a column, each observation is a row, and data is manipulated using an easy-to-understand vocabulary. Most importantly, the data structure remains consistent across manipulation and analysis functions. This can be achieved for RNA sequencing data with the [tidybulk](github.com/stemangiola/tidybulk), [tidyHeatmap](github.com/stemangiola/tidyHeatmap) and tidyverse packages. The package [tidybulk](github.com/stemangiola/tidybulk) provides a tidy data structure and a modular framework for bulk transcriptional analyses. tidyHeatmap provides a tidy implementation of ComplexHeatmap. These packages are part of the tidytranscriptomics suite that introduces a tidy approach to RNA sequencing data. The topics presented in this workshop will be - Data exploration - Data dimensionality reduction and clustering - Differential gene expression analysis - Data visualisation ## Pre-requisites * Basic knowledge of RStudio * Familiarity with tidyverse syntax Recommended Background Reading [Introduction to R for Biologists](https://melbournebioinformatics.github.io/r-intro-biologists/intro_r_biologists.html) 2020-07-27 17:00:00 UTC 2020-07-27 17:55:00 UTC Bioc2020 RNA-Seq [] [] Beginners workshops_and_courses [] RNA-seqTranscriptomicsDifferential ExpressionGene Expression R-programmingBioconductortidyverse

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