5 events found
28 - 30 November 2016
Ljubljana, SloveniaTrain-the-Trainer course https://elixir.mf.uni-lj.si/course/view.php?id=14 https://tess.elixir-europe.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine  life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
Linux Command line course
30 November 2016
Ljubljana, SloveniaLinux Command line course https://elixir.mf.uni-lj.si/course/view.php?id=15 https://tess.elixir-europe.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine  life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
Training Course on Best practices for RNA-Seq data analysis
27 - 29 September 2017
Fisciano, ItalyTraining Course on Best practices for RNA-Seq data analysis https://elixir-iib-training.github.io/website/2017/09/27/RNA-seq-Salerno.html https://tess.elixir-europe.org/events/training-course-on-best-practices-for-rna-seq-data-analysis Next-generation sequencing (NGS) of RNA libraries (RNA-Seq) has become increasingly common and it largely replaced microarray technology for gene expression profiling. The aim of this course is to get a deeper understanding of RNA-Seq experiments, providing a theoretical introduction to the data processing steps, together with practical sessions illustrating the use of the most popular data analysis tools. The classroom size is limited to 25 participants to optimize the learning and the interaction with the instructors. Starting from the raw sequenced data coming from different phenotypical samples (e.g disease vs healthy control samples), genes which are differentially expressed between the two conditions are determine. Some strategies are illustrated for detecting alternative splicing products, predicting novel isoforms and gene fusion events. Some methods for downstream analysis are described to give insight into how biological knowledge can be generated from RNA-Seq experiments. A lecture on single-cell RNA-Seq will provide an idea of how transcriptome data from individual cells is now emerging as a powerful tool, allowing the study of cell-to-cell gene expression heterogeneity in the same tissue. 2017-09-27 09:15:00 UTC 2017-09-29 16:30:00 UTC Anna Marabotti (University of Salerno and ELIXIR-IIB Training Team, Italy), Roberto Tagliaferri (University of Salerno, Italy), Alessandro Weisz (University of Salerno, Italy), Loredana Le Pera (ELIXIR-IIB Training Team and IIT, Italy), Allegra Via (ELIXIR-IIB Training Coordinator, CNR-IBPM, Italy) Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132, Fisciano, Italy Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132 Fisciano Provincia di Salerno Italy 84084 Transcriptomics RNA splicing Sequencing Bioinformatics RNA-Seq Gene expression Campus di Fisciano, University of Salerno, Italy email@example.com, firstname.lastname@example.org ELIXIR Italy PhD students and young researchers in the life science and computational biology field who are planning to use RNA-seq data and are looking for the best practices to analyze these types of data 25 workshops_and_courses first_come_first_servedregistration_of_interest NGSRNA-SeqBioinformaticsData analysisHigh Throughput Sequencing AnalysisGene Expression
6th International Summer School on Rare Disease and Orphan Drug Registries
10 - 14 September 2018
Roma, Italy6th International Summer School on Rare Disease and Orphan Drug Registries http://old.iss.it/cnmr/?lang=1&id=2795&tipo=3 https://tess.elixir-europe.org/events/6th-international-summer-school-on-rare-disease-and-orphan-drug-registries The "6th International Summer School on Rare Disease and Orphan Drug Registries" is organized by the National Centre for Rare Diseases – Istituto Superiore di Sanità in collaboration with RD-Connect, ELIXIR-IT, ELIXIR-NL, EURORDIS, Orphanet, EuRRECa, European Reference Networks, EPIRARE and ICORD. Registries are key resources in order to increase timely and accurate diagnosis, improve patients management, tailor treatments, facilitate clinical trials, support healthcare planning and speed up research. The course will provide participants with useful tools and methodologies for establish a registry, the quality of the data collected and how a registry is turned into a FAIR resource. It intends i) to promote the establishment of Findable, Accessible, Interoperable, Reusable (FAIR) registries in compliance with IRDiRC and EU Recommendations and ii) to support cooperation among different registry stakeholders and coordination with registries that are developed within European Reference Networks and National Plans in the EU. 2018-09-10 08:00:00 UTC 2018-09-14 17:30:00 UTC D. Taruscio, M. Roos, C. Carta Istituto Superiore di Sanità, Via Giano della Bella, 34, Roma, Italy Istituto Superiore di Sanità, Via Giano della Bella, 34 Roma Città Metropolitana di Roma Italy Rare diseases Istituto Superiore di Sanità email@example.com  database managersregistry curators health professionalsresearchersmedical specialists 27 workshops_and_courses registration_of_interest Registryrare diseaseFindableAccessibleInteroperableReusableFAIR
Genome assembly and annotation course 5
1 - 5 July 2019
Milan, ItalyGenome assembly and annotation course 5 https://elixir.mf.uni-lj.si/course/view.php?id=45 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-5 A **genome assembly and annotation course** will take place on **July 1-5, 2019** in **Milan, Italy**, hosted by the Italian ELIXIR Node in cooperation with other ELIXIR nodes that are involved in the ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and annotation experts in Europe will be teaching at the course. The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue with a step-by-step description of all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using Unix/Linux command line. After the course, the participants will have knowledge of commonly used assembly practices and tools. They will be able to run assembly and annotation projects on their own. **Prerequisites:** - **Working knowledge of Unix/Linux command line** - **As part of the course agenda, course participants will prepare a short presentation about their own projects.** Optionally, they may also bring their own data. **Instructions how to register for the course are available on the [ELIXIR-SI eLearning Platform (EELP)](https://elixir.mf.uni-lj.si/course/view.php?id=45).** You will be able to access the course after you register and your registration is approved by the course organizers. 2019-07-01 09:00:00 UTC 2019-07-05 17:00:00 UTC ELIXIR Italy University of Milano-Bicocca, Building U7, Lab 715, Milan, Italy University of Milano-Bicocca, Building U7, Lab 715 Milan Città Metropolitana di Milano Italy Genomics University of Milano-Bicocca, Italy General questions: firstname.lastname@example.org Questions about the course agenda: email@example.com National Research Council of ItalyINRANBIS - National Bioinformatics Infrastructure SwedenELIXIR EXCELERATE life scientistsResearchersPhD students 24 workshops_and_courses registration_of_interest Genomics AssemblyTrainingeLearningEeLP
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