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  • BITS2018/Eixir-IIB Workshop on Docker and Reproducibility

    25 - 26 June 2018

    Torino, Italy

    BITS2018/Eixir-IIB Workshop on Docker and Reproducibility https://tess.elixir-europe.org/events/bits2018-eixir-iib-workshop-on-docker-and-reproducibility Docker is a container framework for Linux that allows a developer to make easier the creation, deployment and execution of applications by using containers. During the workshop the participant will learn the core concepts of Docker and how to easily embed bioinformatic pipelines/workflows into a docker container. This workshop is a satellite event held jointly with the BITS Annual Meeting 2018. 2018-06-25 09:00:00 UTC 2018-06-26 18:00:00 UTC BITS2018/ELIXIR-IIB Via Nizza, 52 Molecular Biotechonology Center, University of Turin, Torino, Italy Via Nizza, 52 Molecular Biotechonology Center, University of Turin Torino Città Metropolitana di Torino Italy 10126 Computer science Bioinformatics University of Turin beccuti@di.unito.it [] bioinformaticiansBiologists, Genomicists, Computer ScientistsPhD and graduate students, young researchers and PIs in the life science and computational biology field 24 workshops_and_courses first_come_first_servedregistration_of_interest DockerReproducibilityContainercomputer-science
  • Docker Advanced Course

    26 - 27 September 2018

    Milano, Italy

    Docker Advanced Course https://tess.elixir-europe.org/events/docker-advanced-course Docker is used to run “containers” that are essentially lightweight virtual machines. Containers are isolated from each other and use their own set of tools and libraries; they can communicate through well-defined channels. This allows to easily deploy programs since all requisites of a program are stored inside the containers. This course will provide the basic notions and tool to allow a developer to “dockerize” her programs, and to manage a set of containers, hence greatly improving the installation process. 2018-09-26 09:00:00 UTC 2018-09-27 18:00:00 UTC Gianluca Della Vedova (Department of Computer Science, University of Milano-Bicocca, IT), Loredana Le Pera (ELIXIR-IIB Training Coordinator Deputy, IBIOM-CNR, IT), Allegra Via (ELIXIR-IIB Training Coordinator, IBPM-CNR, IT) Via Bicocca degli Arcimboldi, 8, Lab. 715, U7 Building, Milano, Italy Via Bicocca degli Arcimboldi, 8, Lab. 715, U7 Building Milano Città Metropolitana di Milano Italy 20126 Computer science Bioinformatics University of Milano-Bicocca, Italy gianluca.dellavedova@unimib.it [] DevelopersDevOps in any field 20 workshops_and_courses first_come_first_servedregistration_of_interest DockerContainersVirtual machine
  • Workshop on Research Objects (RO2018)

    29 October 2018

    Amsterdam, Netherlands

    Workshop on Research Objects (RO2018) https://tess.elixir-europe.org/events/workshop-on-research-objects-ro2018 In this workshop we will explore recent advancements in Research Objects and publishing of research data. **Deadlines**: * 2018-07-01 Abstracts due * 2018-07-15 Research articles and software/data articles due A travel bursary is available for accepted speakers, sponsored by [BioExcel](http://bioexcel.eu) (H2020-675728) ## Research Objects Scholarly Communication has evolved significantly in recent years, with an increasing focus on **Open Research**, [FAIR](https://doi.org/10.1038/sdata.2016.18)data sharing and community-developed open source methods. A question remains on how to publish, archive and explore digital research outputs. A number of initiatives have begun to explore how to package and describe research outputs, data, methods, workflows, provenance and structured metadata, reusing existing Web standards and formats. Such efforts aim to address the challenges of structuring multi-part research outcomes with their context, handling distributed and living content and porting and safely exchange what we collectively can call **Research Objects** between platforms and between researchers. In the workshop **RO2018**, part of [IEEE eScience 2018](https://www.escience2018.com) in Amsterdam, we will explore recent advancements in Research Objects and publishing of research data with peer-reviewed presentations, invited talks, short demos, lightning talks and break-out sessions to further build relationships across scientific domains and RO practitioners. ## Call for Papers RO2018 welcomes submissions of academic abstracts (1-2 pages), data/software articles (3-6 pages) and short research articles (4-8 pages) on cross-cutting case studies or specific research on topics including, but not limited to: FAIR metrics; platforms, infrastructure and tools; lifecycles; access control and secure exchange; examples of exploitation and application; executable containers; metadata, packaging and formats; credit, attribution and peer review; dealing with scale and distribution; driving adoption within current scholarly communications and alignments with community efforts; and domain-specific and cross-domain Research Objects. Further details on submitting: [http://www.researchobject.org/ro2018/submitting-to-ro2018/](http://www.researchobject.org/ro2018/submitting-to-ro2018/) ## Timeline 2018-07-01 Abstracts due 2018-07-15 Research articles and software/data articles due 2018-08-31 Notification of acceptance 2018-08-31 IEEE eScience 2018 early-bird registration deadline 2018-10-29 RO2018 workshop at IEEE eScience 2018 2018-10-29 09:00:00 UTC 2018-10-29 17:00:00 UTC The University of Manchester, researchobject.org, IEEE Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade, Amsterdam, Netherlands Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade Amsterdam Amsterdam Netherlands Workflows Software engineering Ontology and terminology Informatics Data submission, annotation and curation Data identity and mapping Data integration and warehousing Data architecture, analysis and design Data management Computer science [] For any questions, email the Workshop Organizers at ro2018@easychair.org BioExcel [] workshops_and_courses [] digital archivesdata repositorylinked dataWorkflows
  • Docker and Reproducibility

    13 - 14 June 2019

    Torino, Italy

    Docker and Reproducibility https://tess.elixir-europe.org/events/docker-and-reproducibility Docker is a container framework for Linux that allows a developer to make easier the creation, deployment and execution of applications by using containers. During the workshop the participant will learn the core concepts of Docker and how to easily embed bioinformatic pipelines/workflows into a docker container. By the end of this course, the participants will learn: - the basic concepts of Docker; - to assess the advantages of a containerized software development & deployment; - to use Docker engine features necessary for running containerized applications; - how to use the Docker File and Docker Hub to create a Docker image; - the various networking mechanisms available in Docker. 2019-06-13 09:00:00 UTC 2019-06-14 18:00:00 UTC ELIXIR-IIB, CNR, University of Turin University of Turin, Molecular Biotechnology Center, Torino, Italy University of Turin, Molecular Biotechnology Center Torino Città Metropolitana di Torino Italy 10126 Bioinformatics Computer science University of Turin elixir.ita.training@gmail.com [] bioinformaticiansBiologists, Genomicists, Computer ScientistsPhD and graduate students, young researchers and PIs in the life science and computational biology field 15 workshops_and_courses first_come_first_served DockerContainersReproducibilitycomputer-science

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