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32 events found

Keywords: Genome Mapping  or SystemsBiology  or Workflows  or Nanotechnology 

  • Nuclear receptors

    16 - 20 September 2011

    Sitges, Spain

    Nuclear receptors https://tess.elixir-europe.org/events/nuclear-receptors 2011-09-16 00:00:00 UTC 2011-09-20 00:00:00 UTC EMBO Hotel Melia Sitges, Sitges, Spain Hotel Melia Sitges Sitges Spain Genomics [] [] [] meetings_and_conferences [] DiseasesSystemsBiology
  • Chromatin and Systems Biology

    17 - 23 September 2011

    Spetses Island, Greece

    Chromatin and Systems Biology https://tess.elixir-europe.org/events/chromatin-and-systems-biology 2011-09-17 00:00:00 UTC 2011-09-23 00:00:00 UTC EpiGeneSys Spetses Island, Greece Spetses Island Greece Genomics [] [] [] workshops_and_courses [] SystemsBiology
  • Dynamic endosomes

    24 - 29 September 2011

    Kato Galatas, Greece

    Dynamic endosomes https://tess.elixir-europe.org/events/dynamic-endosomes 2011-09-24 00:00:00 UTC 2011-09-29 00:00:00 UTC EMBO Kato Galatas, Greece Kato Galatas Greece Genomics [] [] [] meetings_and_conferences [] SystemsBiology
  • The assembly and function of neuronal circuits

    25 - 30 September 2011

    Ascona, Switzerland

    The assembly and function of neuronal circuits https://tess.elixir-europe.org/events/the-assembly-and-function-of-neuronal-circuits-9228937a-fa0f-4846-9c15-439204dbc069 2011-09-25 00:00:00 UTC 2011-09-30 00:00:00 UTC Friedrich Miescher Institute for Biomedical Research Monte Verita, Ascona, Switzerland Monte Verita Ascona Switzerland [] [] [] meetings_and_conferences [] NeurobiologySystemsBiology
  • Nuclear structure and dynamics

    28 September - 2 October 2011

    LIsle sur la Sorgue, France

    Nuclear structure and dynamics https://tess.elixir-europe.org/events/nuclear-structure-and-dynamics 2011-09-28 09:00:00 UTC 2011-10-02 00:00:00 UTC EMBO Domaine de Mousquety, LIsle sur la Sorgue, France Domaine de Mousquety LIsle sur la Sorgue France Genomics [] [] [] meetings_and_conferences [] SystemsBiologyTranscriptomics
  • Autophagy in health and disease

    30 October - 4 November 2011

    Kibbutz, Israel

    Autophagy in health and disease https://tess.elixir-europe.org/events/autophagy-in-health-and-disease 2011-10-30 09:00:00 UTC 2011-11-04 00:00:00 UTC EMBO Maale Hachamisha, Kibbutz, Israel Maale Hachamisha Kibbutz Israel Preclinical and clinical studies Genomics [] [] [] meetings_and_conferences [] DiseasesSystemsBiology
  • 13th International EMBL PhD Symposium

    17 - 19 November 2011

    Heidelberg, Germany

    13th International EMBL PhD Symposium https://tess.elixir-europe.org/events/13th-international-embl-phd-symposium-e96631c8-24d5-45fc-af3a-d31dfa3f543d 2011-11-17 00:00:00 UTC 2011-11-19 00:00:00 UTC European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany [] [] [] meetings_and_conferences [] SystemsBiology
  • Functional Genomics and Systems Biology 2011

    29 November - 1 December 2011

    Hinxton, United Kingdom

    Functional Genomics and Systems Biology 2011 https://tess.elixir-europe.org/events/functional-genomics-and-systems-biology-2011 2011-11-29 00:00:00 UTC 2011-12-01 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom [] [] [] meetings_and_conferences [] SystemsBiology
  • Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012

    12 - 14 March 2012

    Hinxton, United Kingdom

    Therapeutic Applications of Computational Biology and Chemistry (TACBAC) 2012 https://tess.elixir-europe.org/events/therapeutic-applications-of-computational-biology-and-chemistry-tacbac-2012 2012-03-12 00:00:00 UTC 2012-03-14 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom Drug metabolism Metabolomics Bioinformatics [] [] [] meetings_and_conferences [] BiotherapeuticsSystemsBiology
  • Stem Cell, Biomaterials & Nanotechnology

    27 - 29 March 2012

    Cambridge, United Kingdom

    Stem Cell, Biomaterials & Nanotechnology https://tess.elixir-europe.org/events/stem-cell-biomaterials-nanotechnology 2012-03-27 00:00:00 UTC 2012-03-29 00:00:00 UTC Brain Repair Centre Magdalene College, Cambridge, United Kingdom Magdalene College Cambridge United Kingdom Systems biology Physiology Pharmacology Metabolomics Biotherapeutics [] [] [] meetings_and_conferences [] BiomaterialsNanotechnology
  • Exploring Human Host-Microbiome Interactions in Health and Disease

    8 - 10 May 2012

    Hinxton, United Kingdom

    Exploring Human Host-Microbiome Interactions in Health and Disease https://tess.elixir-europe.org/events/exploring-human-host-microbiome-interactions-in-health-and-disease-895a20fb-f9e3-41b1-8684-10c44813af41 2012-05-08 00:00:00 UTC 2012-05-10 00:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hinxton, United Kingdom Wellcome Trust Conference Centre Hinxton United Kingdom [] [] [] meetings_and_conferences [] MetagenomicsSystemsBiology
  • 30 years of Wnt signalling

    27 June - 1 July 2012

    Egmond aan Zee, Netherlands

    30 years of Wnt signalling https://tess.elixir-europe.org/events/30-years-of-wnt-signalling 2012-06-27 00:00:00 UTC 2012-07-01 00:00:00 UTC EMBO Egmond aan Zee, Netherlands Egmond aan Zee Netherlands Genomics [] [] [] meetings_and_conferences [] SystemsBiology
  • Nanoscience and Nanotechnology 2012

    2 - 5 October 2012

    Frascati, Italy

    Nanoscience and Nanotechnology 2012 https://tess.elixir-europe.org/events/nanoscience-and-nanotechnology-2012 2012-10-02 00:00:00 UTC 2012-10-05 00:00:00 UTC INFN-Laboratori Nazionali di Frascati Via E. Fermi 40, 00044, Frascati, Italy Via E. Fermi 40, 00044 Frascati Italy [] [] [] meetings_and_conferences [] Nanotechnology
  • From genomics and proteomics to cell biology: Current insights

    26 - 28 October 2012

    Heidelberg, Germany

    From genomics and proteomics to cell biology: Current insights https://tess.elixir-europe.org/events/13th-international-embl-phd-symposium 2012-10-26 00:00:00 UTC 2012-10-28 00:00:00 UTC EMBL EMBL Heidelberg, Heidelberg, Germany EMBL Heidelberg Heidelberg Germany Systems biology [] [] [] meetings_and_conferences [] SystemsBiology
  • From Functional Genomics to Systems Biology

    17 - 20 November 2012

    Heidelberg, Germany

    From Functional Genomics to Systems Biology https://tess.elixir-europe.org/events/from-functional-genomics-to-systems-biology-1e9d9d50-683f-4192-8dab-256102bf3e54 2012-11-17 00:00:00 UTC 2012-11-20 00:00:00 UTC EMBL Heidelberg European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany [] [] [] meetings_and_conferences [] SystemsBiologyOtherEventsISCB
  • Exploring Human Host-Microbiome Interactions in Health and Disease

    29 June - 1 July 2015

    Hixton, United Kingdom

    Exploring Human Host-Microbiome Interactions in Health and Disease https://tess.elixir-europe.org/events/exploring-human-host-microbiome-interactions-in-health-and-disease 2015-06-29 01:00:00 UTC 2015-07-01 01:00:00 UTC Wellcome Trust Wellcome Trust Conference Centre, Hixton, United Kingdom Wellcome Trust Conference Centre Hixton United Kingdom Immunology [] [] [] meetings_and_conferences [] MetagenomicsSystemsBiology
  • ICNFA'15 - 6th International Conference on Nanotechnology: Fundamentals and Applications

    15 - 17 July 2015

    Barcelona, Spain

    ICNFA'15 - 6th International Conference on Nanotechnology: Fundamentals and Applications https://tess.elixir-europe.org/events/icnfa-15-6th-international-conference-on-nanotechnology-fundamentals-and-applications 2015-07-15 01:00:00 UTC 2015-07-17 01:00:00 UTC Barcelona, Spain Barcelona Spain Systems biology [] [] [] meetings_and_conferences [] Nanotechnology
  • The Assembly and Function of Neuronal Circuits

    29 September - 2 October 2015

    Ascona, Switzerland

    The Assembly and Function of Neuronal Circuits https://tess.elixir-europe.org/events/the-assembly-and-function-of-neuronal-circuits 2015-09-29 01:00:00 UTC 2015-10-02 01:00:00 UTC Friedrich Miescher Institute for Biomedical Research Monte Verita, Ascona, Switzerland Monte Verita Ascona Switzerland Systems biology [] [] [] meetings_and_conferences [] NeurobiologySystemsBiology
  • International Conference on Nanotechnology and Environmental Issues

    1 - 2 April 2016

    Prague, Czech Republic

    International Conference on Nanotechnology and Environmental Issues https://tess.elixir-europe.org/events/international-conference-on-nanotechnology-and-environmental-issues 2016-04-01 01:00:00 UTC 2016-04-02 01:00:00 UTC Prague, Czech Republic Prague Czech Republic Statistics and probability [] [] [] meetings_and_conferences [] Nanotechnology
  • Global Nanotechnology Congress and Expo

    21 - 23 April 2016

    Dubai, United Arab Emirates

    Global Nanotechnology Congress and Expo https://tess.elixir-europe.org/events/global-nanotechnology-congress-and-expo 2016-04-21 01:00:00 UTC 2016-04-23 01:00:00 UTC Dubai, United Arab Emirates Dubai United Arab Emirates Bioinformatics [] [] [] meetings_and_conferences [] Nanotechnology
  • From Functional Genomics to Systems Biology

    12 - 15 November 2016

    Heidelberg, Germany

    From Functional Genomics to Systems Biology https://tess.elixir-europe.org/events/from-functional-genomics-to-systems-biology 2016-11-12 00:00:00 UTC 2016-11-15 00:00:00 UTC EMBL European Molecular Biology Laboratory, Heidelberg, Germany European Molecular Biology Laboratory Heidelberg Germany Systems biology Genomics Bioinformatics [] [] [] meetings_and_conferences [] SystemsBiologyOtherEventsISCB
  • Revolutionizing Next-Generation Sequencing (2nd edition)

    20 - 21 March 2017

    Antwerpen, Belgium

    Elixir node event
    Revolutionizing Next-Generation Sequencing (2nd edition) https://tess.elixir-europe.org/events/revolutionizing-next-generation-sequencing-2nd-edition Revolutionizing Next-Generation Sequencing (2nd edition) A VIB Tools & Technologies Conference Enabled by better cost-performance curves and novel technology developments, Next-Generation Sequencing technologies keep on pushing the boundaries of our scientific knowledge. The NGS-field is still expanding and to take advantage of new opportunities offered by these technologies in life sciences, VIB Conferences will host the second edition of Revolutionizing Next-Generation Sequencing: Tools and Technologies. After a sold-out 2015 edition, RNGS17 will look at emerging tools and approaches for: Large-scale Sequencing Applications for Current and Emerging Next-Generation Sequencing Platforms Single-Cell Genomics Epigenetics Next-gen Transcriptomics technologies Ultra-long reads and Assembly Computational genomics and data analysis In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions, the conference dinner and our ‘Meet the Expert’ session! You can find more info about the sold out first edition in our event archive. 2017-03-20 08:45:00 UTC 2017-03-21 17:45:00 UTC VIB Conferences Koningin Astridplein 20, 20, Koningin Astridplein, Antwerpen, Belgium Koningin Astridplein 20, 20, Koningin Astridplein Antwerpen Anwerpen Belgium 2018 Epigenomics VIB www.vibconferences.be conferences@vib.be Bluebee Covaris Perkin Elmer SeqLL BD Bioké Diagenode Labcyte Multiplicom Takara Westburg To see all our sponsors please visit www.vibconferences.be PhD'sAcademicsPost-DocsIndustry meetings_and_conferences first_come_first_served Structural genomicsPreclinical and clinical studiesclinical sequencingPopulation geneticsSingle Cell GenomicsDNA-seqSequencingApplied NGSEpigenomicsGenome structureGenome MappingTranscriptomicsData Analysis
  • Introduction to Linux and Workflows for Biologists

    24 - 28 April 2017

    Edinburgh, United Kingdom

    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2017-04-24 00:00:00 UTC 2017-04-28 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Common Workflow Language with Michael Crusoe

    11 May 2017

    University of Melbourne, Australia

    Common Workflow Language with Michael Crusoe https://tess.elixir-europe.org/events/common-workflow-language-with-michael-crusoe 2017-05-11 12:00:00 UTC 2017-05-11 13:00:00 UTC Melbourne Bioinformatics FW Jones Theatre, Level 3, Medical Building , University of Melbourne, Australia FW Jones Theatre, Level 3, Medical Building University of Melbourne Australia Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] programmingWorkflowsBioinformatics
  • Workflow4Experimenters International Course

    29 May - 2 June 2017

    Workflow4Experimenters International Course https://tess.elixir-europe.org/events/workflow4experimenters-international-course Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, and NMR analysis (Giacomoni et al, 2015). Goals: During this one-week course, participants will learn how to use the W4M infrastructure to analyze their own dataset. Morning sessions will be dedicated to methodology and tools. Afternoon sessions will be devoted to tutoring. 2017-05-29 08:35:00 UTC 2017-06-02 19:25:00 UTC IFB (Elixir-Fr) NMR Metabolic pathways Metabolomics Pasteur Institute, PARIS [] Life Science Researchers workshops_and_courses [] GalaxyWorkflows
  • Genopole Summer School

    4 - 7 July 2017

    Seine-Port, France

    Elixir node event
    Genopole Summer School https://tess.elixir-europe.org/events/bioinformatic-and-biostatistic-tools-in-medical-genomics Bioinformatic and Biostatistic tools in medical genomics 2017-07-04 09:00:00 UTC 2017-07-07 00:00:00 UTC Genopole, IFB and France Genomique Châteauform' Seine Port (77), Seine-Port, France Châteauform' Seine Port (77) Seine-Port Seine-et-Marne France 77240 Medicines research and development Metagenomics Functional genomics [] goo.gl/bzEdQ2 [] BioinformaticiansResearcher in life sciences workshops_and_courses first_come_first_served Statistical-model Variant-callingSNPbioinformaticsBiomarker discoverymetagenomicsNext generation sequencing data analysisWorkflowscomputer-science
  • CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF

    28 February 2018

    CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF https://tess.elixir-europe.org/events/cwlexec-a-new-open-source-tool-to-run-cwl-workflows-on-lsf The [Common Workflow Language (CWL)](http://www.commonwl.org/) is a community-led specification for describing analysis _workflows_ and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and _high performance computing_ (HPC) environments. [IBM Spectrum LSF](https://www.ibm.com/us-en/marketplace/hpc-workload-management) (formerly IBM Platform LSF) is a complete workload management solution for demanding HPC environments. Featuring intelligent, policy-driven scheduling, it helps organizations accelerate research and design while controlling costs through superior resource utilization. Recognizing the popularity of CWL among LSF users, we introduce a new open source project **CWLEXEC** to support running CWL workflows on LSF. The project will feature smooth integration with LSF with high efficiency and scalability, self-healing of workflows, support user-specified submission options while keeping CWL definitions portable, and other benefits. * **Title**: CWLEXEC: A new open source tool to run CWL workflows on LSF * **Presenter:** Qingda Wang, Principal Architect, IBM Spectrum LSF Family Products and OEM * **Time**: 2018-02-28 14:00 GMT / 15:00 CET 2018-02-28 14:00:00 UTC 2018-02-28 15:00:00 UTC BioExcel Bioinformatics Genomics Workflows University of ManchesterBioExcel CoE Stian Soiland-Reyes http://ask.bioexcel.eu/ [] bioinformaticiansHPC users workshops_and_courses registration_of_interest WorkflowsCWLHPCLSF
  • Introduction to Linux and Workflows for Biologists

    14 - 18 May 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists-866df86c-a827-433d-9445-af7726bcf5a1 Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2018-05-14 09:00:00 UTC 2018-05-18 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Workflows Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1

    20 August 2018

    H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1 https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series #### Computational requirements for running the H3ABioNet GWAS workflows The first of a series of seven online lectures for Genome Wide Association Studies (GWAS) will cover the technical requirements for setting up a your computational environment for running the H3ABioNet GWAS workflows. In this inaugural lecture of the series, Prof. Hazelhurst will cover the the following topics: Installing and using Nextflow Installing and using Github Use of containers for packaging and running tools Pulling the GWAS pipeline from Github and running it As this lecture aims to provide attendees with an environment to the run the H3ABioNet GWAS workflow at their own pace, there are some preliminary software requirements: Either a Linux machine or an Apple running macOS Ideally you should have machine with at least 2-4 cores and 8GB of RAM. Java 8 Nextflow installed (see installation instructions at https://www.nextflow.io/) Python 3 Please also install either Docker OR the following dependencies using pip3: Pandas, Matplotlib, Openpyxl, SciPy, NumPy PLINK 1.9 [Please also refer to the following documentation to obtain the H3ABioNet GWAS workflow]: https://github.com/h3abionet/h3agwas/blob/master/README.md 2018-08-20 15:00:00 UTC 2018-08-20 16:30:00 UTC H3ABioNet Population genomics Genotyping experiment Computational biology Workflows GWAS study Bioinformatics H3ABioNet info@h3abionet.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chipAnyone who wants to learn more about GWAS workshops_and_courses [] NextflowDockerH3ABioNetGWASWorkflowsGenotyping array analysis bioinformaticsAfricaPopulation GenomicsReproducible ScienceH3Africa genotyping arrayHigh performance computingCloud computingGWAS workflowH3ABioNet GWAS 2018 Lecture Series
  • Workshop on Research Objects (RO2018)

    29 October 2018

    Amsterdam, Netherlands

    Workshop on Research Objects (RO2018) https://tess.elixir-europe.org/events/workshop-on-research-objects-ro2018 In this workshop we will explore recent advancements in Research Objects and publishing of research data. **Deadlines**: * 2018-07-01 Abstracts due * 2018-07-15 Research articles and software/data articles due A travel bursary is available for accepted speakers, sponsored by [BioExcel](http://bioexcel.eu) (H2020-675728) ## Research Objects Scholarly Communication has evolved significantly in recent years, with an increasing focus on **Open Research**, [FAIR](https://doi.org/10.1038/sdata.2016.18)data sharing and community-developed open source methods. A question remains on how to publish, archive and explore digital research outputs. A number of initiatives have begun to explore how to package and describe research outputs, data, methods, workflows, provenance and structured metadata, reusing existing Web standards and formats. Such efforts aim to address the challenges of structuring multi-part research outcomes with their context, handling distributed and living content and porting and safely exchange what we collectively can call **Research Objects** between platforms and between researchers. In the workshop **RO2018**, part of [IEEE eScience 2018](https://www.escience2018.com) in Amsterdam, we will explore recent advancements in Research Objects and publishing of research data with peer-reviewed presentations, invited talks, short demos, lightning talks and break-out sessions to further build relationships across scientific domains and RO practitioners. ## Call for Papers RO2018 welcomes submissions of academic abstracts (1-2 pages), data/software articles (3-6 pages) and short research articles (4-8 pages) on cross-cutting case studies or specific research on topics including, but not limited to: FAIR metrics; platforms, infrastructure and tools; lifecycles; access control and secure exchange; examples of exploitation and application; executable containers; metadata, packaging and formats; credit, attribution and peer review; dealing with scale and distribution; driving adoption within current scholarly communications and alignments with community efforts; and domain-specific and cross-domain Research Objects. Further details on submitting: [http://www.researchobject.org/ro2018/submitting-to-ro2018/](http://www.researchobject.org/ro2018/submitting-to-ro2018/) ## Timeline 2018-07-01 Abstracts due 2018-07-15 Research articles and software/data articles due 2018-08-31 Notification of acceptance 2018-08-31 IEEE eScience 2018 early-bird registration deadline 2018-10-29 RO2018 workshop at IEEE eScience 2018 2018-10-29 09:00:00 UTC 2018-10-29 17:00:00 UTC The University of Manchester, researchobject.org, IEEE Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade, Amsterdam, Netherlands Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade Amsterdam Amsterdam Netherlands Workflows Software engineering Ontology and terminology Informatics Data submission, annotation and curation Data identity and mapping Data integration and warehousing Data architecture, analysis and design Data management Computer science [] For any questions, email the Workshop Organizers at ro2018@easychair.org BioExcel [] workshops_and_courses [] digital archivesdata repositorylinked dataWorkflows
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