H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 3
27 August 2018H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 3 https://www.youtube.com/watch?v=4_-pxWFUpfU&list=PLcQ0XMykNhCQJPz0amnbz9BPM4Bu0Nkgf https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-3 ### Genotype calling from Illumina files The third of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce genotyping SNP array chips with particular emphasis on the H3Africa genotype chip. The lecture will cover common file formats when obtaining genotyping chip data from a service provider such as Illumina and software used for genotype calling. This lecture will also cover genotype calling, sample and probe quality control, probe viewing and exporting of data using GenomeStudio. Converting the data to PLINK format and some tips on troubleshooting and common pitfalls will be discussed. 2018-08-27 15:00:00 UTC 2018-08-27 16:00:00 UTC H3ABioNet Population genomics Bioinformatics Genotyping experiment Genomics Computational biology H3ABioNet firstname.lastname@example.org H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses  Genotype callingH3ABioNetGenotype callingGenome StudioH3Africa genotyping arrayAfrican populationsArray processingIllumina arraysFile formatsAnnotationsNon-polymorphicTop/Bottom annotationGenotype array probesIntensitiesConvert to PLINK format BioinformaticsGenome Wide Association Studies
H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4
29 August 2018H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 4 https://www.youtube.com/watch?v=4_-pxWFUpfU&list=PLcQ0XMykNhCQJPz0amnbz9BPM4Bu0Nkgf https://tess.elixir-europe.org/events/h3abionet-2018-genotyping-chip-data-analysis-and-gwas-lecture-series-lecture-4 ### Quality control and its importance in GWAS In the fourth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS), the importance of doing good quality control for a GWAS will be discussed. The lecture will cover the types of errors one should control for, the specific bioinformatics tools used for quality control. Specific sample and SNP quality control steps that should be undertaken in a GWAS will be explored using specific examples. 2018-08-29 15:00:00 UTC 2018-08-29 16:30:00 UTC H3ABioNet Genotyping experiment GWAS study Computational biology Bioinformatics Population genomics Population genetics H3ABioNet email@example.com H3ABioNet Anyone intersted in GWAS and using the H3Africa genotyping chip 150 workshops_and_courses  Genome Wide Association StudiesGenotype callingH3Africa genotyping arrayAfrican populationsQuality Control for GWASSample Quality ControlSNP Quality ControlPopulation GenomicsGenotypingPLINK formatPrincipal Component AnalysisLow minor allele frequencyMissingnessGWAS workflowDiscordant Sex informationNextflowGenotyping rate callHeterozygosity rateRelated and duplicate individualsIdentity by DescentHardy Weinberg EquilibriumBioinformaticsH3ABioNet GWAS 2018 Lecture Series
A short tour of UCSC data
24 October 2018A short tour of UCSC data https://register.gotowebinar.com/register/6811338586442108418 https://tess.elixir-europe.org/events/a-short-tour-of-ucsc-data 2018-10-24 11:00:00 UTC 2018-10-24 12:30:00 UTC ARDC Australia, Australia Australia Australia Genomics Bioinformatics      genome browsingBioinformatics
Metagenomics Analysis using Galaxy
11 August 2020Metagenomics Analysis using Galaxy https://www.qcif.edu.au/trainingcourses/metagenomics-analysis-using-galaxy/ https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-bfd44b56-d4a3-4863-a62b-e7656374a9a9 This workshop will cover the concepts of 16S bacterial metagenomics analysis. You will learn about pre-processing and quality -filtering of your data, assembly of reads into Operational Taxonomic Units (OTUs), and visualisation and export of data for further analysis. 2020-08-11 09:00:00 UTC 2020-08-11 17:00:00 UTC QCIF Online workshop delivered via Zoom, N/A, Australia Online workshop delivered via Zoom N/A Queensland Australia N/A QCIF Mark Crowe - firstname.lastname@example.org  Postgraduate studentsPostdoctoral researchers workshops_and_courses first_come_first_served MetagenomicsGalaxyBioinformatics
UK Conference of Bioinformatics and Computational Biology 2020
29 - 30 September 2020UK Conference of Bioinformatics and Computational Biology 2020 https://www.earlham.ac.uk/uk-conference-bioinformatics-and-computational-biology-2020 https://tess.elixir-europe.org/events/uk-conference-of-bioinformatics-and-computational-biology-2020 The UK-CBCB conference is designed to bring together biologists, bioinformaticians, computer scientists, software engineers and data scientists across the life sciences to share innovations, applications and best practice in their fields. The conference will be applicable to bioinformatics researchers working on core services or in research teams as well as computer scientists or bioinformaticians developing tools or maintaining data resources. 2020-09-29 09:00:00 UTC 2020-09-30 17:00:00 UTC Earlham Institute Data management Bioinformatics Metabolomics Earlham Institute Training@earlham.ac.uk   meetings_and_conferences registration_of_interest Bioinformaticslife sciencesMetabolomicsSingle Cell GenomicsMicrobial evolution
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