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  • AB3CBS 2016 Conference

    1 - 2 November 2016

    Brisbane, Australia

    AB3CBS 2016 Conference https://tess.elixir-europe.org/events/ab3cbs-2016-conference AB3CBS-2016 represents a united gathering of bioinformaticians and computational biologists, a fusion of ABACBS with: B3, the Big Bioinformatics and Biology symposium, run at QUT annually COMBINE, the official student sub-committee of ABACBS GOBLET, the Global Organisation of Bioinformatics Learning, Education and Training 2016-11-01 09:00:00 UTC 2016-11-02 00:00:00 UTC Queensland University of Technology QUT P-P514, Brisbane, Australia QUT P-P514 Brisbane Australia Bioinformatics [] [] [] meetings_and_conferences [] ABRBioinformaticsComputationalBiology
  • HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS

    3 November 2016

    Brisbane, Australia

    HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS https://tess.elixir-europe.org/events/hands-on-workshop-bioconductor-shiny-for-genomic-analysis The Bioconductor project (http://bioconductor.org) is a widely used collection of over 1,200 R packages for high-throughput genomic analysis. This workshop introduces established and new Bioconductor packages and workflows for analyzing high-throughput sequence data. The Shiny (http://shiny.rstudio.com) library and web server make it possible to create an interactive interface to R code and graphics. In the second part of this workshop, participants will write a simple genome browser using Shiny. By the end of the workshop, participants will be able to create their own interactive apps allowing sharing of analyses with collaborators. 2016-11-03 09:00:00 UTC 2016-11-03 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • BEST PRACTICES IN BIOINFORMATICS TRAINING

    3 - 4 November 2016

    Brisbane, Australia

    BEST PRACTICES IN BIOINFORMATICS TRAINING https://tess.elixir-europe.org/events/best-practices-in-bioinformatics-training This workshop sponsored by GOBLET and ABACBS will provide an opportunity for the local bioinformatics training and education community to come together with GOBLET colleagues to share the training experiences and discuss topics of common interest. The workshop is aimed at those who have an interest in or are active in training and education, teaching topics relevant to bioinformatics. This includes those teaching in full time degree courses as well as those who teach short specialised courses. 2016-11-03 09:00:00 UTC 2016-11-04 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Multivariate data analysis methods for biological data using the R package mixOmics

    4 November 2016

    Brisbane, Australia

    Multivariate data analysis methods for biological data using the R package mixOmics https://tess.elixir-europe.org/events/multivariate-data-analysis-methods-for-biological-data-using-the-r-package-mixomics The workshop will introduce the fundamental concepts of multivariate dimension reduction methodologies for data exploration, identification of biomarkers and integration of large data sets; especially in the context of systems biology, or in research areas where statistical data integration is required. The mixOmics workshop is aimed to data analysts in the fields of bioinformatics, computational biology and applied statistics with a good statistical knowledge and a good working knowledge in R. 2016-11-04 09:00:00 UTC 2016-11-04 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • ABACBS/GOBLET RNA-Seq Data Analysis Workshop

    10 November 2016

    Brisbane, Australia

    ABACBS/GOBLET RNA-Seq Data Analysis Workshop https://tess.elixir-europe.org/events/abacbs-goblet-rna-seq-data-analysis-workshop This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis, and also experimental design is discussed. This course is suitable to those who intend to employ RNA-seq in their research and who would like to understand the concepts underlying this method, even if they do not intend to analyse the data themselves. 2016-11-10 09:00:00 UTC 2016-11-10 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • R/Bash Workshop

    28 - 29 June 2017

    Saint Lucia, Australia

    R/Bash Workshop https://tess.elixir-europe.org/events/r-bash-workshop This hands-on workshop will cover basic programming concepts and tools, including program design, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. 2017-06-28 09:00:00 UTC 2017-06-29 17:00:00 UTC COMBINE Australia The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Australia Computer science University of Queensland [] [] workshops_and_courses [] Bioinformatics
  • RNA-seq Analysis Workshop

    6 - 7 July 2017

    Saint Lucia, Australia

    RNA-seq Analysis Workshop https://tess.elixir-europe.org/events/rna-seq-analysis-workshop In this workshop, you will learn how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the limma-voom analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available. Some basic R knowledge is assumed. If you are not familiar with the R statistical programming language we strongly encourage you attend our R/Bash workshop or a similar course prior to attending. 2017-07-06 09:00:00 UTC 2017-07-07 17:00:00 UTC COMBINE Australia The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Australia RNA-Seq University of Queensland [] [] workshops_and_courses [] BioinformaticsRNA-Seq
  • RNA-Seq analysis in R

    22 - 23 February 2018

    Perth, Australia

    RNA-Seq analysis in R https://tess.elixir-europe.org/events/rna-seq-analysis-in-r 2018-02-22 09:00:00 UTC 2018-02-23 15:00:00 UTC COMBINE Australia Pawsey Supercomputing Centre, 26 Dick Perry Ave, Perth, Australia Pawsey Supercomputing Centre, 26 Dick Perry Ave Perth Australia Pawsey Supercomputing Centre [] [] [] [] bioinformatics RNA-Seq R-programming
  • Software Carpentry Workshop

    26 April - 3 May 2018

    Parkville, Australia

    Software Carpentry Workshop https://tess.elixir-europe.org/events/software-carpentry-workshop-10c78dfc-992c-446a-8685-5a7b483353a0 This workshop will be taught by some of COMBINE’s internationally certified Software Carpentry instructors and cover an introduction to the UNIX shell, version control using Git and Github, and reproducible analysis in R. We are offering a two-day workshop — Software Carpentry workshop in Melbourne, on the 26th of April and the 3rd of May. 2018-04-26 09:00:00 UTC 2018-05-03 17:00:00 UTC COMBINE Australia Seminar Room 1, WEHI 1G Royal Parade, Parkville, Australia Seminar Room 1, WEHI 1G Royal Parade Parkville Melbourne Australia Bioinformatics WEHI [] [] workshops_and_courses [] SoftwareCarpentryUnixGit R-programming
  • Manual curation of Transposable element annotation

    4 - 6 February 2019

    Versailles, France

    Manual curation of Transposable element annotation https://tess.elixir-europe.org/events/manual-curation-of-transposable-element-annotation URGI organizes a BYOD-­style (Bring Your Own Data) training course on manual curation of transposable elements reference sequences obtained with REPET pipelines. For pre-registration, please fill the form before December 26, 2018, we will answer you before January 3rd, 2019: https://goo.gl/forms/ordIgogDuQffuQbZ2 Preliminary program Day 1: - Presentation of REPET outputs of TEdenovo and TEannot pipelines needed to curate the consensus library - Presentation of tools used to assist curation/validation of TE consensus - Presentation of use cases Day 2 and 3 -Practice on your data or a set of precomputed data Prerequesite You have already launched TEdenovo and TEannot pipelines using REPET version 2.5 The MySQL database is still alive OR You have already participated to a TE annotation training (@URGI or in the frame of an Elixir Genome assembly and annotation Course)In this case we’ll provide you a precomputed dataset for the training Fees : 150 € (Payment modalities will be sent once registration accepted) 2019-02-04 09:00:00 UTC 2019-02-06 17:00:00 UTC INRA, URGI platform INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10, Versailles, France INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10 Versailles France 78000 Bioinformatics Genomics INRA urgi-contact@inra.fr [] Bioinformatician, Bioanalysts 10 workshops_and_courses registration_of_interest Transposable elementsManual curationGenome sequence analysis
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