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85 events found

Keywords: service descriptions  or Open Targets  or Immunity  or Galaxy 

  • RNA-Seq Data Analysis Using Galaxy

    26 May 2016

    Sydney, Australia

    RNA-Seq Data Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-26 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Westmead, Sydney, Australia Children’s Medical Research Institute, Westmead Sydney Australia Data architecture, analysis and design RNA-Seq [] [] [] workshops_and_courses [] BPAABRGalaxy
  • Variant Detection Using Galaxy

    27 May 2016

    Sydney, Australia

    Variant Detection Using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy Variant Detection using Galaxy is a one-day, hands-on workshop that will cover the concepts of detecting small variants, including SNPs and small indels, from next-generation sequencing data. You will use and compare a number of popular detection tools, visualise variants using a genome browser, and annotate SNPs for predicting biological effects. Course Outline -During this course you will learn about; -The tool and workflows of SNP and indel detection -Quality filtering and other techniques for improving SNP prediction accuracy -Comparison of variant detection software -the use of the Galaxy platform for variant detection analysis 2016-05-27 09:00:00 UTC 2016-05-27 00:00:00 UTC Children’s Medical Research Institute Children’s Medical Research Institute, Sydney, Australia Children’s Medical Research Institute Sydney Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBPAGalaxyvariantcalling
  • Large-scale analytical workflows on the cloud using Galaxy and Globus

    16 November 2016

    Large-scale analytical workflows on the cloud using Galaxy and Globus https://tess.elixir-europe.org/events/large-scale-analytical-workflows-on-the-cloud-using-galaxy-and-globus We would like to invite you to attend the 8th webinar in BioExcel’s webinar series on computational methods and applications for biomolecular research, which will take place on 16th November 2016: Presenter: Ravi Madduri (introduction by Stian Soiland-Reyes) When: Wed 16th November 2016 16:00 CET (2016-11-16 15:00 UTC) Registration: Free In this BioExcel webinar we are delighted to have Ravi Madduri from Argonne National Laboratory and University of Chicago present Globus Genomics, a system developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data, combining Galaxy workflows with cloud technologies like Amazon EC2 and Globus File Transfer. This system achieves a high degree of end-to-end automation that encompasses every stage of data analysis including initial data retrieval from remote sequencing centers or storage (via the Globus file transfer system); specification, configuration, and reuse of multi-step processing pipelines (via the Galaxy workflow system); creation of custom Amazon Machine Images and on-demand resource acquisition via a specialized elastic provisioner (on Amazon EC2); and efficient scheduling of these pipelines over many processors (via the HTCondor scheduler). The system allows biomedical researchers to perform rapid analysis of large NGS datasets in a fully automated manner, without software installation or a need for any local computing infrastructure. Ravi’s work is part of the BD2K center Big Data for Discovery Science, building infrastructure for reproducible workflows using minids (minimal viable identifiers), analyzing data at scale using identified Docker containers, publish results in to Globus Publication services thus providing an end-to-end framework for reproducible research. In this BioExcel webinar, Ravi will present Globus Genomics and the technologies used to achieve large-scale analytical Galaxy workflows on the cloud. We think this will be of interest not just for the genomics community, but for any scientific workflow users who need to consider distributed deployments, data management and scalability. 2016-11-16 15:00:00 UTC 2016-11-16 16:00:00 UTC BioExcel Whole genome sequencing High-throughput sequencing Genomics Workflows University of ManchesterUniversity of ChicagoArgonne National Laboratory Please register at https://attendee.gotowebinar.com/register/5808939110698431491. You will then receive an email with details of how you can connect to the webinar. [] bioinformaticianssoftware engineersGalaxy usersCloud users workshops_and_courses first_come_first_served CloudGalaxyGlobusNGSNext generation sequencing data analysis
  • Introduction to Galaxy Workshop

    12 April 2017

    Saint Lucia, Australia

    Introduction to Galaxy Workshop https://tess.elixir-europe.org/events/introduction-to-galaxy-workshop 2017-04-12 14:00:00 UTC 2017-04-12 16:00:00 UTC University of Queensland Multi-media room, Queensland Bioscience Precinct, University of Queensland, Saint Lucia, Australia Multi-media room, Queensland Bioscience Precinct, University of Queensland Saint Lucia Brisbane City Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Galaxy
  • Galaxy User Group Meeting and Presentation

    3 May 2017

    Saint Lucia, Australia

    Galaxy User Group Meeting and Presentation https://tess.elixir-europe.org/events/galaxy-user-group-meeting-and-presentation 2017-05-03 10:00:00 UTC 2017-05-03 12:00:00 UTC IMB, Queensland Biomedical Precinct, The University of Queensland, Saint Lucia, Australia IMB, Queensland Biomedical Precinct, The University of Queensland Saint Lucia Brisbane City Australia University of Queensland [] [] meetings_and_conferences [] Galaxy
  • Workflow4Experimenters International Course

    29 May - 2 June 2017

    Workflow4Experimenters International Course https://tess.elixir-europe.org/events/workflow4experimenters-international-course Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, and NMR analysis (Giacomoni et al, 2015). Goals: During this one-week course, participants will learn how to use the W4M infrastructure to analyze their own dataset. Morning sessions will be dedicated to methodology and tools. Afternoon sessions will be devoted to tutoring. 2017-05-29 08:35:00 UTC 2017-06-02 19:25:00 UTC IFB (Elixir-Fr) NMR Metabolic pathways Metabolomics Pasteur Institute, PARIS [] Life Science Researchers workshops_and_courses [] GalaxyWorkflows
  • Training Course on RNA-Seq data analysis

    18 - 20 July 2017

    Milano, Italy

    Training Course on RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-rna-seq-data-analysis The course will provide students with theoretical and practical knowledge on how to perform bioinformatic analyses of RNA-Seq data, mainly aimed at the identification of genes differentially expressed across different conditions. 2017-07-18 14:00:00 UTC 2017-07-20 12:00:00 UTC Allegra Via, Giulio Pavesi, Federico Zambelli, Matteo Chiara Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26, Milano, Italy Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26 Milano Città Metropolitana di Milano Italy RNA-Seq University of Milan, Milan, Italy elixir.ita.training@gmail.com, giulio.pavesi@unimi.it ELIXIR Italy PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics. 30 workshops_and_courses [] RNA-SeqGalaxy
  • Genome assembly using Galaxy

    2 - 3 August 2017

    Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy 2017-08-02 09:00:00 UTC 2017-08-03 12:30:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Genome AssemblyGalaxy
  • Introduction to Galaxy and the Genomics Virtual Laboratory

    3 October 2017

    Carlton, Australia

    Introduction to Galaxy and the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomic-virtual-laboratory 2017-10-03 13:30:00 UTC 2017-10-03 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan Street, Carlton, Australia Melbourne Bioinformatics, 187 Grattan Street Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] Galaxy
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 October 2017

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-bb89ebd1-8328-4935-b289-dca21e442a2b 2017-10-04 13:30:00 UTC 2017-10-04 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan Street, Carlton, Australia Melbourne Bioinformatics, 187 Grattan Street Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-SeqGalaxy
  • Variant Calling with Galaxy & the GVL for beginners

    5 October 2017

    Carlton, Australia

    Variant Calling with Galaxy & the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-the-gvl-for-beginners 2017-10-05 13:30:00 UTC 2017-10-05 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan Street, Carlton, Australia Melbourne Bioinformatics, 187 Grattan Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant callingGalaxy
  • Introduction to Galaxy and the GVL

    20 March 2018

    Carlton, Australia

    Introduction to Galaxy and the GVL https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-gvl 2018-03-20 09:30:00 UTC 2018-03-20 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] GalaxyGenomics
  • Variant Calling with Galaxy & the GVL for beginners

    21 March 2018

    Carlton, Australia

    Variant Calling with Galaxy & the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-the-gvl-for-beginners-0281d622-39e8-4e65-92a0-02ba3f2b2fb8 2018-03-21 09:30:00 UTC 2018-03-21 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant callingGalaxyGenomics
  • Introduction to Galaxy and the GVL

    20 June 2018

    Carlton, Australia

    Introduction to Galaxy and the GVL https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-gvl-2f8380b1-e013-4649-9073-f35be1a1ff77 2018-06-20 09:30:00 UTC 2018-06-20 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] workshops_and_courses [] BioinformaticsGalaxyGVL
  • Introduction to Galaxy Australia - Genome Assembly (University of Adelaide)

    22 August 2018

    Adelaide, Australia

    Introduction to Galaxy Australia - Genome Assembly (University of Adelaide) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-genome-assembly-university-of-adelaide 2018-08-22 12:30:00 UTC 2018-08-22 15:30:00 UTC EMBL-ABR Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide, Adelaide, Australia Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide Adelaide Australia 5000 Bioinformatics University of Adelaide [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: James Cook University Node, Cairns Campus)

    22 August 2018

    Queensland, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: James Cook University Node, Cairns Campus) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Precinct E, Building E4, Room 104 James Cook University (Cairns Campus) 1/14-88 McGregor Road, Smithfield, Queensland, Australia Precinct E, Building E4, Room 104 James Cook University (Cairns Campus) 1/14-88 McGregor Road, Smithfield Queensland Australia 4878 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: James Cook University Node, Townsville Campus)

    22 August 2018

    Queensland, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: James Cook University Node, Townsville Campus) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-james-cook-university-node-townsville-campus 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Building 2, Room 001 James Cook University (Townsville Campus) , Queensland, Australia Building 2, Room 001 James Cook University (Townsville Campus) Queensland Australia 4354 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node)

    22 August 2018

    Melbourne, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-melbourne-bioinformatics-node 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: QCIF Node - UQ)

    22 August 2018

    Queensland, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: QCIF Node - UQ) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-qcif-node-uq 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR RCC Meeting Room, Room 505 Level 5, Axon Building, Building 47, University of Queensland, St Lucia, Queensland, Australia RCC Meeting Room, Room 505 Level 5, Axon Building, Building 47, University of Queensland, St Lucia Queensland Australia 4067 Bioinformatics University of Queensland [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: QCIF Node - USQ)

    22 August 2018

    Queensland, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: QCIF Node - USQ) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-qcif-node-usq 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR T111 Collaborative Teaching Room (T Building), West Street, University of Southern Queensland, Toowoomba,, Queensland, Australia T111 Collaborative Teaching Room (T Building), West Street, University of Southern Queensland, Toowoomba, Queensland Australia 4350 Bioinformatics University of Southern Queensland [] [] [] [] bioinformaticsGalaxy
  • Genome Assembly using Galaxy Australia (EMBL-ABR: Sydney Informatics Hub Node)

    22 August 2018

    New South Wales , Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: Sydney Informatics Hub Node) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-sydney-informatics-hub-node 2018-08-22 13:00:00 UTC 2018-08-22 17:00:00 UTC EMBL-ABR Seminar Room 1160, University of Sydney Business School (H70), Abercrombie St & Codrington St, Darlington, New South Wales , Australia Seminar Room 1160, University of Sydney Business School (H70), Abercrombie St & Codrington St, Darlington New South Wales Australia 2006 Bioinformatics The University of Sydney [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-clayton 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-hudson 2018-08-22 13:00:00 UTC 2018-08-22 14:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Sydney Informatics Hub)

    22 August 2018

    New South Wales, Australia

    Introduction to Galaxy Australia - Genome Assembly (Sydney Informatics Hub) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-genome-assembly-sydney-informatics-hub 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Seminar Room 1160, University of Sydney Business School (H70), Abercrombie St & Codrington St, Darlington, New South Wales, Australia Seminar Room 1160, University of Sydney Business School (H70), Abercrombie St & Codrington St, Darlington New South Wales Australia 2006 Bioinformatics University of Sydney [] [] [] [] bioinformaticsGalaxy
  • RNA-Seq analysis using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-99676e29-b720-4387-b14e-a1ae64b772ad 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 Bioinformatics University of Queensland training@qfab.org [] [] workshops_and_courses [] Galaxy RNA-Seqbioinformatics
  • Galaxy Proteomics workshop Prague 2018

    4 - 5 October 2018

    Prague, Czechia

    Elixir node event
    Galaxy Proteomics workshop Prague 2018 https://tess.elixir-europe.org/events/galaxy-proteomics-workshop-prague-2018 ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic 2018-10-04 09:00:00 UTC 2018-10-05 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Proteomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest GalaxytrainingproteomicseLearningEeLP
  • Workshop at CUK

    16 October 2018

    Korea (Republic of)

    Workshop at CUK https://tess.elixir-europe.org/events/workshop-at-cuk During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-10-16 09:00:00 UTC 2018-10-16 00:00:00 UTC The Catholic University of Korea, Korea (Republic of) The Catholic University of Korea Korea (Republic of) [] [] [] workshops_and_courses [] Open Targets
  • Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-jcu-cairns-campus 2018-10-23 01:00:00 UTC 2018-10-23 05:00:00 UTC EMBL-ABR Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield, Queensland, Australia Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield Queensland Australia 4878 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (JCU-Townsville Campus)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (JCU-Townsville Campus) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-jcu-townsville-campus 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Building 2, Room 001, James Cook University (Townsville Campus), 1 James Cook Drive, Douglas, , Queensland, Australia Building 2, Room 001, James Cook University (Townsville Campus), 1 James Cook Drive, Douglas, Queensland Australia 4354 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxyQuality Assurance
  • Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-melbourne-bioinformatics 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy RNA-Seq
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