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20 events found

Keywords: service descriptions  or Open Targets  or CNS sequencing   or NGS 

  • High-thoughput Omics & Data Integration Workshop

    14 - 16 February 2013

    Barcelona, Spain

    High-thoughput Omics & Data Integration Workshop https://tess.elixir-europe.org/events/high-thoughput-omics-data-integration-workshop 2013-02-14 00:00:00 UTC 2013-02-16 00:00:00 UTC SeqAhead Hospital Duran i Reynals, Barcelona, Spain Hospital Duran i Reynals Barcelona Spain Bioinformatics [] [] [] workshops_and_courses [] NGSdataintegrationmethodologystatisticsEMBnet
  • 3-day Fundamentals in NGS Data Analysis

    12 - 14 July 2016

    Perth, Australia

    3-day Fundamentals in NGS Data Analysis https://tess.elixir-europe.org/events/3-day-fundamentals-in-ngs-data-analysis Fundamentals in NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. Workshop Outline Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis -de novo genome assembly 2016-07-12 09:00:00 UTC 2016-07-14 00:00:00 UTC Curtin University, Perth, Australia Curtin University Perth Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBPANGSIntroduction
  • RNA-Seq Next Generation Sequencing Analysis Workshop

    26 - 28 October 2016

    Leicester, United Kingdom

    RNA-Seq Next Generation Sequencing Analysis Workshop https://tess.elixir-europe.org/events/rna-seq-next-generation-sequencing-analysis-workshop This course will provide an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping), differential expression, de novo and referenced based transcriptome assembly, annotation and gene discovery of RNA sequencing (RNA-Seq) data. The course will be delivered using a mixture of lectures and computer based hands on practical sessions using real data. This course is aimed at wet-lab biologists who are involved in research projects that will require the handling and analysis of NGS data. A significant proportion of the course will be computer-based using command line tools in the Unix environment, therefore, in order to gain maximum benefit from the course all attendees will be required to have basic Unix skills. This means applicants must at a minimum be able to move easily around the file system and make directories (e.g. pwd, cd, ls, mkdir), manage files (e.g. cp, mv, ln, rm, less, head, tail, wc) and search with grep. 2016-10-26 00:00:00 UTC 2016-10-28 00:00:00 UTC University of Leicester University of Leicester - College Court Conference Centre, Leicester, United Kingdom University of Leicester - College Court Conference Centre Leicester United Kingdom LE2 3UF Bioinformatics Sequencing RNA-Seq [] [] [] workshops_and_courses [] NGSRNA-SeqBioinformatics
  • Large-scale analytical workflows on the cloud using Galaxy and Globus

    16 November 2016

    Large-scale analytical workflows on the cloud using Galaxy and Globus https://tess.elixir-europe.org/events/large-scale-analytical-workflows-on-the-cloud-using-galaxy-and-globus We would like to invite you to attend the 8th webinar in BioExcel’s webinar series on computational methods and applications for biomolecular research, which will take place on 16th November 2016: Presenter: Ravi Madduri (introduction by Stian Soiland-Reyes) When: Wed 16th November 2016 16:00 CET (2016-11-16 15:00 UTC) Registration: Free In this BioExcel webinar we are delighted to have Ravi Madduri from Argonne National Laboratory and University of Chicago present Globus Genomics, a system developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data, combining Galaxy workflows with cloud technologies like Amazon EC2 and Globus File Transfer. This system achieves a high degree of end-to-end automation that encompasses every stage of data analysis including initial data retrieval from remote sequencing centers or storage (via the Globus file transfer system); specification, configuration, and reuse of multi-step processing pipelines (via the Galaxy workflow system); creation of custom Amazon Machine Images and on-demand resource acquisition via a specialized elastic provisioner (on Amazon EC2); and efficient scheduling of these pipelines over many processors (via the HTCondor scheduler). The system allows biomedical researchers to perform rapid analysis of large NGS datasets in a fully automated manner, without software installation or a need for any local computing infrastructure. Ravi’s work is part of the BD2K center Big Data for Discovery Science, building infrastructure for reproducible workflows using minids (minimal viable identifiers), analyzing data at scale using identified Docker containers, publish results in to Globus Publication services thus providing an end-to-end framework for reproducible research. In this BioExcel webinar, Ravi will present Globus Genomics and the technologies used to achieve large-scale analytical Galaxy workflows on the cloud. We think this will be of interest not just for the genomics community, but for any scientific workflow users who need to consider distributed deployments, data management and scalability. 2016-11-16 15:00:00 UTC 2016-11-16 16:00:00 UTC BioExcel Whole genome sequencing High-throughput sequencing Genomics Workflows University of ManchesterUniversity of ChicagoArgonne National Laboratory Please register at https://attendee.gotowebinar.com/register/5808939110698431491. You will then receive an email with details of how you can connect to the webinar. [] bioinformaticianssoftware engineersGalaxy usersCloud users workshops_and_courses first_come_first_served CloudGalaxyGlobusNGSNext generation sequencing data analysis
  • 3Gb-TEST NGS Course Ljubljana 2017

    25 - 27 September 2017

    Ljubljana, Slovenia

    3Gb-TEST NGS Course Ljubljana 2017 https://tess.elixir-europe.org/events/3gb-test-ngs-in-a-diagnostic-setting A 3-day course on NGS Ljubljana, Slovenia in the period of 25-27 September 2017. The focus of the course is on clinical diagnostics using exome/genome sequences, variant identification and analysis including afternoon practical sessions. 2017-09-25 08:00:00 UTC 2017-09-27 18:00:00 UTC 3Gb-TEST Best Western Premier Hotel Slon, Ljubljana, Slovenia Best Western Premier Hotel Slon Ljubljana Slovenia Sequencing Exome sequencing Sequence analysis [] J.A.Lopez_Hernandez@lumc.nl In collaboration with RD-Connect [] 100 workshops_and_courses registration_of_interest NGSDiagnosisWESWGSELSI
  • Training Course on Best practices for RNA-Seq data analysis

    27 - 29 September 2017

    Fisciano, Italy

    Training Course on Best practices for RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-best-practices-for-rna-seq-data-analysis Next-generation sequencing (NGS) of RNA libraries (RNA-Seq) has become increasingly common and it largely replaced microarray technology for gene expression profiling. The aim of this course is to get a deeper understanding of RNA-Seq experiments, providing a theoretical introduction to the data processing steps, together with practical sessions illustrating the use of the most popular data analysis tools. The classroom size is limited to 25 participants to optimize the learning and the interaction with the instructors. Starting from the raw sequenced data coming from different phenotypical samples (e.g disease vs healthy control samples), genes which are differentially expressed between the two conditions are determine. Some strategies are illustrated for detecting alternative splicing products, predicting novel isoforms and gene fusion events. Some methods for downstream analysis are described to give insight into how biological knowledge can be generated from RNA-Seq experiments. A lecture on single-cell RNA-Seq will provide an idea of how transcriptome data from individual cells is now emerging as a powerful tool, allowing the study of cell-to-cell gene expression heterogeneity in the same tissue. 2017-09-27 09:15:00 UTC 2017-09-29 16:30:00 UTC Anna Marabotti (University of Salerno and ELIXIR-IIB Training Team, Italy), Roberto Tagliaferri (University of Salerno, Italy), Alessandro Weisz (University of Salerno, Italy), Loredana Le Pera (ELIXIR-IIB Training Team and IIT, Italy), Allegra Via (ELIXIR-IIB Training Coordinator, CNR-IBPM, Italy) Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132, Fisciano, Italy Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 132 Fisciano Provincia di Salerno Italy 84084 Transcriptomics RNA splicing Sequencing Bioinformatics RNA-Seq Gene expression Campus di Fisciano, University of Salerno, Italy elixir.ita.training@gmail.com, amarabotti@unisa.it ELIXIR Italy PhD students and young researchers in the life science and computational biology field who are planning to use RNA-seq data and are looking for the best practices to analyze these types of data 25 workshops_and_courses first_come_first_servedregistration_of_interest NGSRNA-SeqBioinformaticsData analysisHigh Throughput Sequencing AnalysisGene Expression
  • 3Gb-TEST NGS Course Mexico 2017

    10 - 13 October 2017

    México City, Mexico

    3Gb-TEST NGS Course Mexico 2017 https://tess.elixir-europe.org/events/3gb-test-ngs-course-mexico-2017 The focus of the course is on clinical diagnostics using exome/genome sequences, variant identification and analysis including afternoon practical sessions in dry lab as well as in wetlab. *Event mostly in Spanish 2017-10-10 08:00:00 UTC 2017-10-13 14:30:00 UTC 3Gb-TEST Centro Médico Nacional 20 de Noviembre, México City, Mexico Centro Médico Nacional 20 de Noviembre México City DF Mexico Data quality management Whole genome sequencing Exome sequencing Bioinformatics ISSSTE genomicatraslacional@gmail.com [] [] 200 workshops_and_courses [] NGS bioinformaticsNGSDiagnosisDatabases
  • Workshop at CUK

    16 October 2018

    Korea (Republic of)

    Workshop at CUK https://tess.elixir-europe.org/events/workshop-at-cuk During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-10-16 09:00:00 UTC 2018-10-16 00:00:00 UTC The Catholic University of Korea, Korea (Republic of) The Catholic University of Korea Korea (Republic of) [] [] [] workshops_and_courses [] Open Targets
  • MSc course, Understanding bioinformatics resources and their application

    4 - 5 December 2018

    United Kingdom

    MSc course, Understanding bioinformatics resources and their application https://tess.elixir-europe.org/events/msc-course-understanding-bioinformatics-resources-and-their-application During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-12-04 09:00:00 UTC 2018-12-05 00:00:00 UTC UCL, United Kingdom UCL United Kingdom [] [] [] [] [] Open Targets
  • OpenRiskNet/NanoCommons ontology meeting

    13 - 14 December 2018

    Brussels, Belgium

    OpenRiskNet/NanoCommons ontology meeting https://tess.elixir-europe.org/events/openrisknet-nanocommons-ontology-meeting The goal of this meeting is to get a picture of the ongoing ontology activities in the toxicology area, harmonize these efforts and the developed ontologies therein, and extend the existing toxicology ontology to support OpenRiskNet and NanoCommons tasks. Part of this will be the ontological annotation of OpenRiskNet Application Programming Interfaces (APIs) as used on their cloud. Other goals include extension of the ontology with missing terms (if any), potentially write up guidance documents, and annotation of data sets (possible via OpenRiskNet data APIs). 2018-12-13 13:00:00 UTC 2018-12-14 14:00:00 UTC University of Birmingham office in Brussels, Brussels, Belgium University of Birmingham office in Brussels Brussels Belgium Ontology and terminology Toxicology [] NanoCommonsOpenRiskNetH2020 [] workshops_and_courses [] risk assessmentnanosafetydata annotationservice descriptions
  • Bioinformatics for Discovery

    23 January 2019

    Hinxton, United Kingdom

    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-f51fe25c-6f52-4589-b79c-5f829803f89a In this 90 min long tutorial, we will introduce the Open Targets and its other tools to aid drug target identification and prioritisation. This workshop is part of the Bioinformatics for Discovery course and is aimed at bench biologists working in the area of discovery science who want to learn more about bioinformatics tools and resources. No prior knowledge of bioinformatics is required and no experience of programming or the use of Unix / Linux is necessary. . 2019-01-23 09:00:00 UTC 2019-01-23 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    31 January 2019

    Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre

    Open Targets Workshop https://tess.elixir-europe.org/events/mining-gene-disease-associations-open-targets In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-01-31 09:00:00 UTC 2019-01-31 00:00:00 UTC Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre, Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    12 February 2019

    Korea Genome Organisation - Winter symposium

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-02-12 09:00:00 UTC 2019-02-12 00:00:00 UTC Korea Genome Organisation - Winter symposium, Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium [] [] [] workshops_and_courses [] Open Targets
  • EMBL-EBI Intro to multiomics data integration

    13 February 2019

    Hinxton, United Kingdom

    EMBL-EBI Intro to multiomics data integration https://tess.elixir-europe.org/events/embl-ebi-intro-to-multiomics-data-integration In this 1 hour tutorial, we will highlight how the Open Targets integrates genetics, genomics, drug information and literature in a single web portal, the Open Targets Platform . This workshop is part of the EMBL-EBI Intro to multiomics data integration course and is imed at biologists who have some experience of working with at least one type of omics data, and computational biologists/bioinformaticians who wish to gain a better understanding of the biological challenges when working with integrated datasets. No programming or command line experience is required to attend this course. 2019-02-13 09:00:00 UTC 2019-02-13 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Kangwon National University

    13 February 2019

    Open Targets workshop

    Kangwon National University https://tess.elixir-europe.org/events/kangwon-national-university In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-02-13 09:00:00 UTC 2019-02-13 00:00:00 UTC Open Targets workshop, Open Targets workshop Open Targets workshop Open Targets workshop [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    28 March 2019

    EMBL-EBI

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop-55d54e1b-0a19-4e14-9719-6df0ad7054b9 In this workshop, we introduce Open Targets and its underlying projects for data integration for access and visualisation of biological data in drug target identification and discovery. 2019-03-28 09:00:00 UTC 2019-03-28 00:00:00 UTC EMBL-EBI, EMBL-EBI EMBL-EBI EMBL-EBI [] [] [] workshops_and_courses [] Open Targets
  • Open Targets webinar - Daiichi-Sankyo

    15 May 2019

    United Kingdom

    Open Targets webinar - Daiichi-Sankyo https://tess.elixir-europe.org/events/open-targets-webinar-c-comend-training-in-translational-research In this webinar, we introduce Open Targets and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for systematic target identification and prioritisation in drug discovery. 2019-05-15 09:00:00 UTC 2019-05-15 00:00:00 UTC Hinxton, United Kingdom Hinxton United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Genetics at ESHG

    15 June 2019

    Sweden

    Open Targets Genetics at ESHG https://tess.elixir-europe.org/events/workshop-at-eshg In this workshop, we will introduce Open Targets Genetics Portal as part of the Open Targets ecosystem, highlighting variant-centric statistical evidence for prioritizing candidate causal variants at trait-associated loci, and identifying potential drug targets. We will present POSTGAP, a pipeline which merges genetic associations curated from literature with functional genomics, epigenetic and expression data (e.g., eQTL, promoter capture Hi-C, DNase hypersensitivity sites, regulatory elements) to resolve association signals at a locus and link each variant to its target gene(s) using a single evidence score. The portal also incorporates pre-computed fine-mapping at trait-associated loci across hundreds of UK Biobank phenotypes as well as cross-trait colocalization, furthering drug repurposing opportunities. This workshop will enable you to effectively use Open Targets Genetics to gain biological insight, prioritize genes, and inform target decision-making. Intended Audience: Attendees interested in the translational application of genetics and genomics with an emphasis on the identification of target genes of trait-associated loci, drug target identification, prioritisation and repurposing. Participants should bring their laptops for exploration of the Open Targets Genetics Portal in situ. 2019-06-15 09:00:00 UTC 2019-06-15 00:00:00 UTC Gothenburg, Sweden Gothenburg Sweden [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Genetics at ESHG

    15 June 2019

    Sweden

    Open Targets Genetics at ESHG https://tess.elixir-europe.org/events/open-targets-genetics-at-eshg In this workshop, we will introduce Open Targets Genetics Portal as part of the Open Targets ecosystem, highlighting variant-centric statistical evidence for prioritizing candidate causal variants at trait-associated loci, and identifying potential drug targets. We will present POSTGAP, a pipeline which merges genetic associations curated from literature with functional genomics, epigenetic and expression data (e.g., eQTL, promoter capture Hi-C, DNase hypersensitivity sites, regulatory elements) to resolve association signals at a locus and link each variant to its target gene(s) using a single evidence score. The portal also incorporates pre-computed fine-mapping at trait-associated loci across hundreds of UK Biobank phenotypes as well as cross-trait colocalization, furthering drug repurposing opportunities. This workshop will enable you to effectively use Open Targets Genetics to gain biological insight, prioritize genes, and inform target decision-making. Intended Audience: Attendees interested in the translational application of genetics and genomics with an emphasis on the identification of target genes of trait-associated loci, drug target identification, prioritisation and repurposing. Participants should bring their laptops for exploration of the Open Targets Genetics Portal in situ. 2019-06-15 09:00:00 UTC 2019-06-15 00:00:00 UTC Gothenburg, Sweden Gothenburg Sweden [] [] [] workshops_and_courses [] Open Targets
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
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