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  • Resources for Computational Drug Discovery

    2 - 6 July 2012

    Hinxton, United Kingdom

    Resources for Computational Drug Discovery https://tess.elixir-europe.org/events/resources-for-computational-drug-discovery-8d8565b8-5430-4a4f-8959-9463fbd1591e 2012-07-02 00:00:00 UTC 2012-07-06 00:00:00 UTC Wellcome Trust Wellcome Trust Genome Campus, Hinxton, United Kingdom Wellcome Trust Genome Campus Hinxton United Kingdom [] [] [] meetings_and_conferences [] drugdiscovery
  • 2nd Prato Conference on the Pathogenesis of Bacterial Diseases of Animals

    10 - 13 October 2012

    Prato, Italy

    2nd Prato Conference on the Pathogenesis of Bacterial Diseases of Animals https://tess.elixir-europe.org/events/2nd-prato-conference-on-the-pathogenesis-of-bacterial-diseases-of-animals 2012-10-10 00:00:00 UTC 2012-10-13 00:00:00 UTC ASN events The Monash University Prato Centre, Prato, Italy The Monash University Prato Centre Prato Italy [] [] [] meetings_and_conferences [] drugdiscovery
  • Global Discovery to Development Innovation Leaders Summit

    23 - 24 October 2012

    Philadelphia, United States of America

    Global Discovery to Development Innovation Leaders Summit https://tess.elixir-europe.org/events/global-discovery-to-development-innovation-leaders-summit 2012-10-23 09:00:00 UTC 2012-10-24 00:00:00 UTC Gbx Summits The Westin Hotel, Philadelphia, United States of America The Westin Hotel Philadelphia United States of America Medicine [] [] [] meetings_and_conferences [] drugdiscovery
  • Realizing the value of plant natural products: from metabolic engineering to biorefining

    16 November 2012

    Stevenage, United Kingdom

    Realizing the value of plant natural products: from metabolic engineering to biorefining https://tess.elixir-europe.org/events/realizing-the-value-of-plant-natural-products-from-metabolic-engineering-to-biorefining 2012-11-16 00:00:00 UTC 2012-11-16 00:00:00 UTC EuroSciCon The Stevenage Bioscience Catalyst, Stevenage, United Kingdom The Stevenage Bioscience Catalyst Stevenage United Kingdom [] [] [] meetings_and_conferences [] drugdiscovery
  • BioFIT (Fostering Innovation and Transfer)

    3 - 4 December 2012

    Lille, France

    BioFIT (Fostering Innovation and Transfer) https://tess.elixir-europe.org/events/biofit-fostering-innovation-and-transfer 2012-12-03 09:00:00 UTC 2012-12-04 00:00:00 UTC BioFIT Lille, France Lille France [] [] [] meetings_and_conferences [] drugdiscovery
  • CGS – The Cancer Genome Summit

    4 - 6 December 2012

    Boston, United States of America

    CGS – The Cancer Genome Summit https://tess.elixir-europe.org/events/cgs-the-cancer-genome-summit 2012-12-04 09:00:00 UTC 2012-12-06 00:00:00 UTC Hanson Wade Boston, United States of America Boston United States of America Medicine Genomics [] [] [] meetings_and_conferences [] drugdiscovery
  • Protein-Protein Interactions

    17 - 18 April 2013

    San Diego, United States of America

    Protein-Protein Interactions https://tess.elixir-europe.org/events/protein-protein-interactions-8bd48b7e-9908-49f1-bac8-94f16812d42e 2013-04-17 09:00:00 UTC 2013-04-18 00:00:00 UTC Cambridge Healthtech Institute Hilton San Diego Resort & Spa, San Diego, United States of America Hilton San Diego Resort & Spa San Diego United States of America Proteomics [] [] [] meetings_and_conferences [] drugdiscovery
  • Protein-Protein Interactions

    19 - 20 April 2016

    San Diego, United States of America

    Protein-Protein Interactions https://tess.elixir-europe.org/events/protein-protein-interactions 2016-04-19 01:00:00 UTC 2016-04-20 01:00:00 UTC Cambridge Healthtech Institute Hilton San Diego Resort & Spa, San Diego, United States of America Hilton San Diego Resort & Spa San Diego United States of America Proteomics [] [] [] meetings_and_conferences [] drugdiscovery
  • Resources for Computational Drug Discovery

    7 - 11 November 2016

    Hinxton, United Kingdom

    Resources for Computational Drug Discovery https://tess.elixir-europe.org/events/resources-for-computational-drug-discovery 2016-11-07 00:00:00 UTC 2016-11-11 00:00:00 UTC EMBL-EBI Wellcome Trust Genome Campus, Hinxton, United Kingdom Wellcome Trust Genome Campus Hinxton United Kingdom Bioinformatics [] [] [] workshops_and_courses [] drugdiscovery
  • Ensembl REST API workshop

    25 - 26 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Ensembl REST API workshop https://tess.elixir-europe.org/events/ensembl-rest-api-workshop The [Ensembl project](http://www.ensembl.org/) provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers using the [REST API](http://rest.ensembl.org/) to query the core, variation, compara and functional genomics (regulation) databases. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2027436&course-title=Ensembl%20REST%20API%20Workshop).'' 2017-05-25 08:30:00 UTC 2017-05-26 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Bioinformaticians and wet-lab biologists who can programGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served Genomics
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
  • Introduction to Galaxy and the GVL

    20 March 2018

    Carlton, Australia

    Introduction to Galaxy and the GVL https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-gvl 2018-03-20 09:30:00 UTC 2018-03-20 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] GalaxyGenomics
  • Variant Calling with Galaxy & the GVL for beginners

    21 March 2018

    Carlton, Australia

    Variant Calling with Galaxy & the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-the-gvl-for-beginners-0281d622-39e8-4e65-92a0-02ba3f2b2fb8 2018-03-21 09:30:00 UTC 2018-03-21 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant callingGalaxyGenomics
  • Genome assembly and annotation course 4

    24 - 28 September 2018

    Montferrier-sur-Lez (Montpellier area), France

    Elixir node event
    Genome assembly and annotation course 4 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-4 ELIXIR Genome assembly and annotation course 4, Sept 24-28 2018 at the CIRAD, Montpellier, France 2018-09-24 09:00:00 UTC 2018-09-28 17:00:00 UTC ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI Cirad, 389, Avenue Agropolis, Montferrier-sur-Lez (Montpellier area), France Cirad, 389, Avenue Agropolis Montferrier-sur-Lez (Montpellier area) Hérault France Genomics CIRAD elixir@mf.uni-lj.si [] life scientistsResearchersPhD students 25 [] registration_of_interest Genomics AssemblyTrainingeLearningEeLP
  • Linux for Genomics

    1 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-4e98de3e-0102-46ab-9720-22f1122fd31d Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2018-10-01 09:00:00 UTC 2018-10-01 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsLinux
  • Introduction to RNA-seq Data Analysis

    2 - 3 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to RNA-seq Data Analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-data-analysis-5989e86e-a408-481d-b3c7-5a1413b0e4a6 RNA sequencing (RNA-seq) is quickly becoming the method of choice for transcriptome profiling. Nevertheless, it is a non-trivial task to transform the vast amount of data obtained with high-throughput sequencers into useful information. Thus, RNA-seq data analysis is still a major bottleneck for most researchers in this field. The ability of correctly interpreting RNA-seq results, as well as knowledge on the intrinsic properties of these data, are essential to avoid incorrect experimental designs and the application of inappropriate analysis methodologies. The aim of this workshop is to familiarise researchers with RNA-seq data and to initiate them in the analysis by providing lectures and practicals on analysis methodologies. In the practicals Illumina-generated sequencing data and various widely used software programs will be used. 2018-10-02 09:00:00 UTC 2018-10-03 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN RNA-Seq Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsRNA-seq
  • Workshop at CUK

    16 October 2018

    Korea (Republic of)

    Workshop at CUK https://tess.elixir-europe.org/events/workshop-at-cuk During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-10-16 09:00:00 UTC 2018-10-16 00:00:00 UTC The Catholic University of Korea, Korea (Republic of) The Catholic University of Korea Korea (Republic of) [] [] [] workshops_and_courses [] Open Targets
  • Introduction to Python for Biologists

    22 - 26 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Python for Biologists https://tess.elixir-europe.org/events/introduction-to-python-for-biologists-d98f6dfb-45c5-4377-bbe9-9e8d30ed086d Python is a dynamic, readable language that is a popular platform for all types of bioinformatics work, from simple one-off scripts to large, complex software projects. This workshop is aimed at complete beginners and assumes no prior programming experience. It gives an overview of the language with an emphasis on practical problem-solving, using examples and exercises drawn from various aspects of bioinformatics work. The workshop is structured so that the parts of the language most useful for bioinformatics are introduced as early as possible, and that students can start writing plausibly-useful programs after the first few sessions. After completing the workshop, students should be in a position to (1) apply the skills they have learned to tackling problems in their own research and (2) continue their Python education in a self-directed way. 2018-10-22 09:00:00 UTC 2018-10-26 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsPython
  • MSc course, Understanding bioinformatics resources and their application

    4 - 5 December 2018

    United Kingdom

    MSc course, Understanding bioinformatics resources and their application https://tess.elixir-europe.org/events/msc-course-understanding-bioinformatics-resources-and-their-application During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-12-04 09:00:00 UTC 2018-12-05 00:00:00 UTC UCL, United Kingdom UCL United Kingdom [] [] [] [] [] Open Targets
  • OpenRiskNet/NanoCommons ontology meeting

    13 - 14 December 2018

    Brussels, Belgium

    OpenRiskNet/NanoCommons ontology meeting https://tess.elixir-europe.org/events/openrisknet-nanocommons-ontology-meeting The goal of this meeting is to get a picture of the ongoing ontology activities in the toxicology area, harmonize these efforts and the developed ontologies therein, and extend the existing toxicology ontology to support OpenRiskNet and NanoCommons tasks. Part of this will be the ontological annotation of OpenRiskNet Application Programming Interfaces (APIs) as used on their cloud. Other goals include extension of the ontology with missing terms (if any), potentially write up guidance documents, and annotation of data sets (possible via OpenRiskNet data APIs). 2018-12-13 13:00:00 UTC 2018-12-14 14:00:00 UTC University of Birmingham office in Brussels, Brussels, Belgium University of Birmingham office in Brussels Brussels Belgium Ontology and terminology Toxicology [] NanoCommonsOpenRiskNetH2020 [] workshops_and_courses [] risk assessmentnanosafetydata annotationservice descriptions
  • 4th Advanced in silico Drug Design workshop/hackathon 2019

    21 - 25 January 2019

    Olomouc, Czechia

    Elixir node event
    4th Advanced in silico Drug Design workshop/hackathon 2019 https://tess.elixir-europe.org/events/4th-advanced-in-silico-drug-design-workshop-hackathon-2019 2019-01-21 12:00:00 UTC 2019-01-25 15:00:00 UTC Palacky University Olomouc (UPOL) Faculty of Science 17. listopadu 1192/12, 12, 17. listopadu, Olomouc, Czechia 17. listopadu 1192/12, 12, 17. listopadu Olomouc Olomouc Czechia Pharmacology Chemical biology Cheminformatics Bioinformatics Drug discovery Palacky University Olomouc [] PhD studentspost-docs workshops_and_courses first_come_first_served drugdiscovery
  • Bioinformatics for Discovery

    23 January 2019

    Hinxton, United Kingdom

    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-f51fe25c-6f52-4589-b79c-5f829803f89a In this 90 min long tutorial, we will introduce the Open Targets and its other tools to aid drug target identification and prioritisation. This workshop is part of the Bioinformatics for Discovery course and is aimed at bench biologists working in the area of discovery science who want to learn more about bioinformatics tools and resources. No prior knowledge of bioinformatics is required and no experience of programming or the use of Unix / Linux is necessary. . 2019-01-23 09:00:00 UTC 2019-01-23 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    31 January 2019

    Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre

    Open Targets Workshop https://tess.elixir-europe.org/events/mining-gene-disease-associations-open-targets In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-01-31 09:00:00 UTC 2019-01-31 00:00:00 UTC Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre, Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    12 February 2019

    Korea Genome Organisation - Winter symposium

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-02-12 09:00:00 UTC 2019-02-12 00:00:00 UTC Korea Genome Organisation - Winter symposium, Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium [] [] [] workshops_and_courses [] Open Targets
  • EMBL-EBI Intro to multiomics data integration

    13 February 2019

    Hinxton, United Kingdom

    EMBL-EBI Intro to multiomics data integration https://tess.elixir-europe.org/events/embl-ebi-intro-to-multiomics-data-integration In this 1 hour tutorial, we will highlight how the Open Targets integrates genetics, genomics, drug information and literature in a single web portal, the Open Targets Platform . This workshop is part of the EMBL-EBI Intro to multiomics data integration course and is imed at biologists who have some experience of working with at least one type of omics data, and computational biologists/bioinformaticians who wish to gain a better understanding of the biological challenges when working with integrated datasets. No programming or command line experience is required to attend this course. 2019-02-13 09:00:00 UTC 2019-02-13 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
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