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  • RNA-seq data analysis using Chipster

    31 January 2017

    Elixir node event
    RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-chipster ELIXIR tutorial “RNA-seq data analysis using Chipster”, Jan 31, 2017 2017-01-31 09:00:00 UTC 2017-01-31 17:00:00 UTC IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI Transcriptomics Genomics IOCB PragueUniversity of Ljubljana, Faculty of Medicine [] Researchers workshops_and_courses registration_of_interest transcriptomics RNA-SeqeLearningEeLP
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 May 2017

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl In this tutorial we will cover the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2017-05-04 13:30:00 UTC 2017-05-04 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700, Swanston Street, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700, Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-Seq
  • Introduction to RNA-seq and ChIP-seq data analysis

    22 - 23 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to RNA-seq and ChIP-seq data analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-and-chip-seq-data-analysis-83b4f656-ef26-441e-b0ef-f990e78de471 The aim of this course is to familiarize the participants with the primary analysis of datasets generated through two popular high-throughput sequencing (HTS) assays: ChIP-seq and RNA-seq. This course starts with a brief introduction to the transition from capillary to high-throughput sequencing (HTS) and discusses quality control issues, which are common among all HTS datasets. Next, we will present the alignment step and how it differs between the two analysis workflows. Finally, we focus on dataset specific downstream analysis, including peak calling and motif analysis for ChIP-seq and quantification of expression, transcriptome assembly and differential expression analysis for RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2017446&course-title=Introduction%20to%20RNA-seq%20and%20ChIP-seq%20data%20analysis).'' 2017-06-22 08:30:00 UTC 2017-06-23 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq ChIP-seq Data mining Transcriptomics Data visualisation Functional genomics Epigenomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served RNA-SeqChIP-SeqData Analysis
  • Training Course on RNA-Seq data analysis

    18 - 20 July 2017

    Milano, Italy

    Training Course on RNA-Seq data analysis https://tess.elixir-europe.org/events/training-course-on-rna-seq-data-analysis The course will provide students with theoretical and practical knowledge on how to perform bioinformatic analyses of RNA-Seq data, mainly aimed at the identification of genes differentially expressed across different conditions. 2017-07-18 14:00:00 UTC 2017-07-20 12:00:00 UTC Allegra Via, Giulio Pavesi, Federico Zambelli, Matteo Chiara Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26, Milano, Italy Computer Room (aula Calcolo) Department of Biosciences, University of Milan, Via Celoria 26 Milano Città Metropolitana di Milano Italy RNA-Seq University of Milan, Milan, Italy elixir.ita.training@gmail.com, giulio.pavesi@unimi.it ELIXIR Italy PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics. 30 workshops_and_courses [] RNA-SeqGalaxy
  • RNA-Seq analysis in R

    22 - 23 February 2018

    Perth, Australia

    RNA-Seq analysis in R https://tess.elixir-europe.org/events/rna-seq-analysis-in-r 2018-02-22 09:00:00 UTC 2018-02-23 15:00:00 UTC COMBINE Australia Pawsey Supercomputing Centre, 26 Dick Perry Ave, Perth, Australia Pawsey Supercomputing Centre, 26 Dick Perry Ave Perth Australia Pawsey Supercomputing Centre [] [] [] [] bioinformatics RNA-Seq R-programming
  • ResBaz Brisbane 2018

    6 - 8 June 2018

    Brisbane , Australia

    ResBaz Brisbane 2018 https://tess.elixir-europe.org/events/resbaz-brisbane-2018 2018-06-06 08:30:00 UTC 2018-06-08 17:30:00 UTC ResBaz Southbank campus of Griffith University, Brisbane , Australia Southbank campus of Griffith University Brisbane Australia 4101 RNA-Seq Bioinformatics Griffith UniversityUniversity of QueenslandQCIFUniversity of Southern QueenslandQueensland University of Technology resbazbris@gmail.com Amazon Web Services [] workshops_and_courses [] pythonbioinformatics RNA-Seq
  • RNA-Seq analysis using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-99676e29-b720-4387-b14e-a1ae64b772ad 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 Bioinformatics University of Queensland training@qfab.org [] [] workshops_and_courses [] Galaxy RNA-Seqbioinformatics
  • Workshop at CUK

    16 October 2018

    Korea (Republic of)

    Workshop at CUK https://tess.elixir-europe.org/events/workshop-at-cuk During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-10-16 09:00:00 UTC 2018-10-16 00:00:00 UTC The Catholic University of Korea, Korea (Republic of) The Catholic University of Korea Korea (Republic of) [] [] [] workshops_and_courses [] Open Targets
  • Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (JCU - Cairns Campus) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-jcu-cairns-campus 2018-10-23 01:00:00 UTC 2018-10-23 05:00:00 UTC EMBL-ABR Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield, Queensland, Australia Precinct E, Building E5, Room 101 James Cook University (Cairns Campus), 1/14-88 McGregor Road, Smithfield Queensland Australia 4878 Bioinformatics James Cook University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-melbourne-bioinformatics 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Clayton)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-clayton 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Hudson)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-hudson 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton, Melbourne, Australia Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (QCIF - UQ)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (QCIF - UQ) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-qcif-uq 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR RCC Meeting Room, Room 505, Level 5, Axon Building, Building 47, University of Queensland, St Lucia, Queensland, Australia RCC Meeting Room, Room 505, Level 5, Axon Building, Building 47, University of Queensland, St Lucia Queensland Australia 4067 Bioinformatics University of Queensland [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Introduction to Galaxy Australia: RNA-seq (QCIF-USQ)

    23 October 2018

    Queensland, Australia

    Introduction to Galaxy Australia: RNA-seq (QCIF-USQ) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-qcif-usq 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR C305 Collaborative Tutorial Room (C Building), West Street, University of Southern Queensland, Toowoomba, Queensland, Australia C305 Collaborative Tutorial Room (C Building), West Street, University of Southern Queensland, Toowoomba Queensland Australia 4350 Bioinformatics University of Southern Queensland [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Introduction to Galaxy Australia: RNA-seq (University of Adelaide)

    23 October 2018

    Adelaide, Australia

    Introduction to Galaxy Australia: RNA-seq (University of Adelaide) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-university-of-adelaide 2018-10-23 01:30:00 UTC 2018-10-23 16:30:00 UTC EMBL-ABR Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide, Adelaide, Australia Room 234, Ingkarni Wardli Building, North Terrace Campus, University of Adelaide Adelaide Australia 5000 Bioinformatics University of Adelaide [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Introduction to Galaxy Australia: RNA-seq (Sydney Informatics Hub)

    23 October 2018

    New South Wales , Australia

    Introduction to Galaxy Australia: RNA-seq (Sydney Informatics Hub) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-sydney-informatics-hub 2018-10-23 02:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Seminar Room 437, Old Teacher’s College (A22), University of Sydney, Manning Road, Camperdown, New South Wales , Australia Seminar Room 437, Old Teacher’s College (A22), University of Sydney, Manning Road, Camperdown New South Wales Australia 2006 Bioinformatics The University of Sydney [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • MSc course, Understanding bioinformatics resources and their application

    4 - 5 December 2018

    United Kingdom

    MSc course, Understanding bioinformatics resources and their application https://tess.elixir-europe.org/events/msc-course-understanding-bioinformatics-resources-and-their-application During this course you will learn about the Open Targets partnership and its goals and explore the the Open Targets Platform, a publicly available resource for drug discovery and translational research. The Platform integrates genetics, omics and chemical information to compute and score gene-disease associations. 2018-12-04 09:00:00 UTC 2018-12-05 00:00:00 UTC UCL, United Kingdom UCL United Kingdom [] [] [] [] [] Open Targets
  • OpenRiskNet/NanoCommons ontology meeting

    13 - 14 December 2018

    Brussels, Belgium

    OpenRiskNet/NanoCommons ontology meeting https://tess.elixir-europe.org/events/openrisknet-nanocommons-ontology-meeting The goal of this meeting is to get a picture of the ongoing ontology activities in the toxicology area, harmonize these efforts and the developed ontologies therein, and extend the existing toxicology ontology to support OpenRiskNet and NanoCommons tasks. Part of this will be the ontological annotation of OpenRiskNet Application Programming Interfaces (APIs) as used on their cloud. Other goals include extension of the ontology with missing terms (if any), potentially write up guidance documents, and annotation of data sets (possible via OpenRiskNet data APIs). 2018-12-13 13:00:00 UTC 2018-12-14 14:00:00 UTC University of Birmingham office in Brussels, Brussels, Belgium University of Birmingham office in Brussels Brussels Belgium Ontology and terminology Toxicology [] NanoCommonsOpenRiskNetH2020 [] workshops_and_courses [] risk assessmentnanosafetydata annotationservice descriptions
  • Bioinformatics for Discovery

    23 January 2019

    Hinxton, United Kingdom

    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-f51fe25c-6f52-4589-b79c-5f829803f89a In this 90 min long tutorial, we will introduce the Open Targets and its other tools to aid drug target identification and prioritisation. This workshop is part of the Bioinformatics for Discovery course and is aimed at bench biologists working in the area of discovery science who want to learn more about bioinformatics tools and resources. No prior knowledge of bioinformatics is required and no experience of programming or the use of Unix / Linux is necessary. . 2019-01-23 09:00:00 UTC 2019-01-23 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    31 January 2019

    Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre

    Open Targets Workshop https://tess.elixir-europe.org/events/mining-gene-disease-associations-open-targets In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-01-31 09:00:00 UTC 2019-01-31 00:00:00 UTC Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre, Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    12 February 2019

    Korea Genome Organisation - Winter symposium

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-02-12 09:00:00 UTC 2019-02-12 00:00:00 UTC Korea Genome Organisation - Winter symposium, Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium Korea Genome Organisation - Winter symposium [] [] [] workshops_and_courses [] Open Targets
  • EMBL-EBI Intro to multiomics data integration

    13 February 2019

    Hinxton, United Kingdom

    EMBL-EBI Intro to multiomics data integration https://tess.elixir-europe.org/events/embl-ebi-intro-to-multiomics-data-integration In this 1 hour tutorial, we will highlight how the Open Targets integrates genetics, genomics, drug information and literature in a single web portal, the Open Targets Platform . This workshop is part of the EMBL-EBI Intro to multiomics data integration course and is imed at biologists who have some experience of working with at least one type of omics data, and computational biologists/bioinformaticians who wish to gain a better understanding of the biological challenges when working with integrated datasets. No programming or command line experience is required to attend this course. 2019-02-13 09:00:00 UTC 2019-02-13 00:00:00 UTC EMBL-EBI European Bioinformatics Institute Main Building, Hinxton, United Kingdom EMBL-EBI European Bioinformatics Institute Main Building Hinxton Cambridgeshire United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • Kangwon National University

    13 February 2019

    Open Targets workshop

    Kangwon National University https://tess.elixir-europe.org/events/kangwon-national-university In this workshop, we introduce the Open Targets consortium, its underlying projects and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for access and visualisation of biological data in drug target identification and discovery. 2019-02-13 09:00:00 UTC 2019-02-13 00:00:00 UTC Open Targets workshop, Open Targets workshop Open Targets workshop Open Targets workshop [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Workshop

    28 March 2019

    EMBL-EBI

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop-55d54e1b-0a19-4e14-9719-6df0ad7054b9 In this workshop, we introduce Open Targets and its underlying projects for data integration for access and visualisation of biological data in drug target identification and discovery. 2019-03-28 09:00:00 UTC 2019-03-28 00:00:00 UTC EMBL-EBI, EMBL-EBI EMBL-EBI EMBL-EBI [] [] [] workshops_and_courses [] Open Targets
  • Genome assembly using Galaxy (1 day)

    2 April 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-74b19a67-0776-4788-b50a-3892982068d6 2019-04-02 09:00:00 UTC 2019-04-02 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    3 April 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-d3626656-b283-49a3-8689-efbe53c8390d 2019-04-03 09:00:00 UTC 2019-04-03 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    4 April 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-9377cbe8-ded6-497e-a88e-0774f3bfd18e 2019-04-04 09:00:00 UTC 2019-04-04 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] Galaxybioinformatics RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    5 April 2019

    Brisbane , Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-bc05624b-d0ec-439f-9ac2-8867726db761 2019-04-05 09:00:00 UTC 2019-04-05 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane , Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Assembly of long-read sequencing (2 days)

    7 - 8 May 2019

    Brisbane, Australia

    Assembly of long-read sequencing (2 days) https://tess.elixir-europe.org/events/assembly-of-long-read-sequencing-2-days 2019-05-07 09:00:00 UTC 2019-05-08 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA-Seq using R (2 days - Knowledge of R required)

    14 - 15 May 2019

    Brisbane , Australia

    RNA-Seq using R (2 days - Knowledge of R required) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-advanced 2019-05-14 09:00:00 UTC 2019-05-15 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane , Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
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