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53 events found

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  • Introduction to R for Biologists (ONLINE LIVE TRAINING)

    28 - 29 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to R for Biologists (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-r-for-biologists-online-live-training-a8e95d49-6369-4b4d-9c1e-d92dcab08320 PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors to assist you with instant and personalised feedback and to help you to run/execute the scripts which we will be using during the course. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. R is one of the leading programming languages in Data Science. It is widely used to perform statistics, machine learning, visualisations and data analyses. It is an open source programming language so all the software we will use in the course is free. This course is an introduction to R designed for participants with no programming experience. We will start from scratch by introducing how to start programming in R and progress our way and learn how to read and write to files, manipulate data and visualise it by creating different plots - all the fundamental tasks you need to get you started analysing your data. During the course we will be working with one of the most popular packages in R; tidyverse that will allow you to manipulate your data effectively and visualise it to a publication level standard. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3573906&course-title=Introduction%20to%20R%20for%20Biologists).'' 2020-10-28 09:30:00 UTC 2020-10-29 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Protein Structure Analysis, autumn session

    29 October 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, autumn session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-autumn-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-10-29 09:00:00 UTC 2020-10-29 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to Scientific Figure Design (ONLINE LIVE TRAINING)

    30 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Scientific Figure Design (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-scientific-figure-design-online-live-training PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team will be teaching the course live online in conjunction with the presenters. This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Further information and access to the course materials is [here](http://www.bioinformatics.babraham.ac.uk/training.html#figuredesign). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3566463&course-title=Introduction%20to%20Scientific%20Figure%20Design).'' 2020-10-30 09:30:00 UTC 2020-10-30 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Bioinformatics & Functional Genomics in Zebrafish

    2 - 5 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics & Functional Genomics in Zebrafish https://tess.elixir-europe.org/events/bioinformatics-functional-genomics-in-zebrafish-ff8f3fea-a89e-4b25-93b1-111191cae4b7 This course has been designed specifically for researchers working within the Zebrafish community, providing an introduction and practical knowledge of tools and resources for working with functional genomics data. 2020-11-02 09:00:00 UTC 2020-11-05 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Metagenomics bioinformatics

    2 - 6 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics-91c48308-c2e6-48eb-b1ea-113f79da1edd This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including marker gene, whole gene shotgun (WGS) and assembly-based approaches. 2020-11-02 09:00:00 UTC 2020-11-06 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Metagenomics bioinformatics (Virtual)

    2 - 6 November 2020

    Hinxton, United Kingdom

    Elixir node event
    Metagenomics bioinformatics (Virtual) https://tess.elixir-europe.org/events/metagenomics-bioinformatics-virtual Gain knowledge on the tools, processes and analysis approaches used in the field of metagenomics. 2020-11-02 09:00:00 UTC 2020-11-06 17:00:00 UTC Virtual, Hinxton, United Kingdom Virtual Hinxton United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Fourteenth ELIXIR Board meeting (Hinxton)

    3 - 4 November 2020

    United Kingdom

    Fourteenth ELIXIR Board meeting (Hinxton) https://tess.elixir-europe.org/events/fourteenth-elixir-board-meeting-hinxton The fourteenth ELIXIR Board will take place at the Wellcome Genome Campus in Hinxton, UK From 3-4 November 2020.. This meeting is only open to the ELIXIR Board and Observers. Agenda items and meeting documentation will be made available to Board members in due time.  Please send any inquiries regarding ELIXIR Board meetings to info@elixir-europe.org. 2020-11-03 12:00:00 UTC 2020-11-04 14:00:00 UTC United Kingdom United Kingdom [] [] [] meetings_and_conferences [] []
  • Introduction to Statistical Analysis (Online)

    5 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Statistical Analysis (Online) https://tess.elixir-europe.org/events/introduction-to-statistical-analysis-online PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. This course provides a refresher on the foundations of statistical analysis. The emphasis is on interpreting the results of a statistical test, and being able to determine the correct test to apply. Practicals are conducted using a series of online apps, and we will not teach a particular statistical analysis package, such as R. For courses that teach R, please see the links under "Related courses" . This event is part of a series of training courses organized in collaboration with the Bioinformatics Core Facility at [CRUK Cambridge Institute](http://www.cruk.cam.ac.uk/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3593310&course-title=Introduction%20to%20Statistical%20Analysis).'' 2020-11-05 09:30:00 UTC 2020-11-05 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Ensembl Browser workshop, University of California San Francisco, 9-10 November 2020

    9 - 10 November 2020

    Hinxton, United Kingdom

    Elixir node event
    Ensembl Browser workshop, University of California San Francisco, 9-10 November 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-university-of-california-san-francisco-9-10-november-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-11-09 17:00:00 UTC 2020-11-10 21:00:00 UTC Virtual, Hinxton, United Kingdom Virtual Hinxton United Kingdom CB10 1SD [] Michal Szpak [] [] [] [] HDRUK
  • Gentle hands-on introduction to Python programming

    16 - 30 November 2020

    Leuven, Belgium

    Elixir node event
    Gentle hands-on introduction to Python programming https://tess.elixir-europe.org/events/gentle-hands-on-introduction-to-python-programming-tbc-autumn Learning the basics of Python programming: different variables, reading files, writing files, conditional statements Being able to write a basic Python script from scratch 2020-11-16 09:00:00 UTC 2020-11-30 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Biological data analysis using the InterMine User Interface (Online)

    16 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Biological data analysis using the InterMine User Interface (Online) https://tess.elixir-europe.org/events/biological-data-analysis-using-the-intermine-user-interface-online PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. [InterMine](http://intermine.org/) is a freely available open-source data warehouse built specifically for the integration and analysis of complex biological data. InterMine-based data analysis platforms are available for many organisms including mouse, rat, budding yeast, plants (over 87 plant genomes), nematodes, fly, zebrafishHymenoptera, Planaria, and more recently human. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression. InterMine provides sophisticated query and visualisation tools both through a web interface and a powerful web service API, with multiple language bindings including Python and R. This course will focus on the InterMine web interface and will introduce participants to all aspects of the user interface, starting with some simple exercises and building up to more complex analysis encompassing several analysis tools and comparative analysis across organisms. The exercises will mainly use the fly, human and mouse databases, but the course is applicable to anyone working with data for which an InterMine database is available (a comprehensive list of InterMine databases is available [here.](http://registry.intermine.org/)) This event is organised alongside a half day course on Biological data analysis using the InterMine API. More information on this event is available [here](https://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intermineAPI). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3603729&amp;course-title=Biological%20data%20analysis%20using%20InterMine).'' 2020-11-16 13:00:00 UTC 2020-11-16 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] The course is aimed at <b>bench biologists and bioinformaticians</b> who need to analyse their own data against large biological datasetsor who need to search against several biological datasets to gain knowledge of a gene/gene setbiological process or function.This course is for researchers from a broad biological background as the techniques learned can be applied to any InterMine databasecovering a diverse range of organisms and biological data.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological data analysis using the InterMine API (Online)

    17 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Biological data analysis using the InterMine API (Online) https://tess.elixir-europe.org/events/biological-data-analysis-using-the-intermine-api-online PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. [InterMine](http://intermine.org/) is a freely available open-source data warehouse built specifically for the integration and analysis of complex biological data sets. InterMine-based data analysis platforms are available for many organisms including mouse, rat, budding yeast, plants (over 87 plant genomes), nematodes, fly, zebrafish, Hymenoptera, Planaria, and more recently human. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression. InterMine provides sophisticated query and visualisation tools both through a web interface and a powerful web service API, with multiple language bindings including Python and R. This course will focus on programmatic access to InterMine through the API and InterMine searches will be done using Python and R scripts. The exercises will mainly use the fly, human and mouse databases, but the course is applicable to anyone working with data for which an InterMine database is available (a comprehensive list of InterMine databases is available [here](http://registry.intermine.org/). This event is organised alongside a half day course on Biological data analysis using the InterMine User Interface. More information on this event are available [ https://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intermine here]. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3603743&amp;course-title=Biological%20data%20analysis%20using%20the%20InterMine%20API).'' 2020-11-17 13:00:00 UTC 2020-11-17 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] This course is aimed at <b>bench biologists and bioinformaticians</b> who are interested in large scale and/or automated analysis of their own or existing data against large biological datasetsor who are interested in graphs and other visualisations of data generated through an InterMine search.The course is also suitable for anyone wanting to know what an API is and how the ability to access data programmatically could help them in their research.This course is for researchers from a broad biological background as the techniques learned can be applied to any InterMine databasecovering a diverse range of organisms and biological data.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of bulk RNA-seq data (ONLINE LIVE TRAINING)

    18 - 20 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Analysis of bulk RNA-seq data (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/analysis-of-bulk-rna-seq-data-online-live-training-018bc625-9d97-4f56-97fa-4a78c1f5e75e PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. The aim of this course is to familiarize the participants with the primary analysis of RNA-seq data. This course starts with a brief introduction to RNA-seq and discusses quality control issues. Next, we will present the alignment step, quantification of expression and differential expression analysis. For downstream analysis we will focus on tools available through the Bioconductor project for manipulating and analysing bulk RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3593329&amp;course-title=Analysis%20of%20bulk%20RNA-seq%20data).'' 2020-11-18 09:30:00 UTC 2020-11-20 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Data mining Transcriptomics Data visualisation Functional genomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Emerging Technologies in Single Cell research

    19 - 20 November 2020

    Leuven, Belgium

    Emerging Technologies in Single Cell research https://tess.elixir-europe.org/events/emerging-technologies-in-single-cell-research Biomedical research is at a turning point. Single cell technologies are opening extraordinary opportunities to address today’s medical challenges. These new tools will enhance our molecular understanding of functional cell states. They will give us major insights into when, how and why diseases of all kinds arise. Working at the cutting edge of this field, VIB has teamed up with LifeTime, a pan-European research initiative that wants to combine single-cell multi-omics, advanced imaging, artificial intelligence/machine learning and personalized disease models to fundamentally change the current medical practice. At the first edition of Emerging Technologies in Single Cell research, a two-day conference, VIB and LifeTime will bring together top researchers in the fields of multi-omics and artificial intelligence. Travel Grants We offer 5 travel grants to international attendees, which will reimburse travel costs up to 400 Euros. Are you interested in attending SingleCell20 and want to have a chance on a travel grant? Submit your motivation below by clicking on the 'Apply for a grant' button before 27 September 2020. The organizing committee will notify you of your travel grant acceptance by the end of June. No registration is needed before submitting a travel grant proposal. When you’re awarded with a travel grant you will receive a practical email containing the next steps. Note that being awarded a travel grant does not mean being registered for the conference. Scroll down to apply for your grant. 2020-11-19 08:00:00 UTC 2020-11-20 18:00:00 UTC VIB KU Leuven Universiteitshal, 22, Naamsestraat, Leuven, Belgium KU Leuven Universiteitshal, 22, Naamsestraat Leuven Vlaams-Brabant Belgium VIBLifeTime VIB Conferences team - +32 9 244 66 11 - Conferences@vib.be [] AcademicsPhD studentsIndustry 300 meetings_and_conferences [] Single cell sequencing Single Cell GenomicsSingle Cell technologiessingle cell rna-seq
  • Structural bioinformatics

    23 - 27 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Structural bioinformatics https://tess.elixir-europe.org/events/structural-bioinformatics-de38d612-6cf9-481f-9a57-3a54511976de This course explores bioinformatics data resources and tools for the interpretation and exploitation of bio-macromolecular structures. 2020-11-23 09:00:00 UTC 2020-11-27 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Structural bioinformatics (Virtual)

    23 - 27 November 2020

    Hinxton, United Kingdom

    Elixir node event
    Structural bioinformatics (Virtual) https://tess.elixir-europe.org/events/structural-bioinformatics-virtual This course explores bioinformatics data resources and tools for the browsing, analysis and interpretation of bio-macromolecular structure information. 2020-11-23 09:00:00 UTC 2020-11-27 17:00:00 UTC Virtual, Hinxton, United Kingdom Virtual Hinxton United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • An Introduction to Machine Learning (ONLINE LIVE TRAINING)

    23 - 25 November 2020

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Machine Learning (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/an-introduction-to-machine-learning-online-live-training-ca34af0c-9423-4e3c-bfe3-539c1ed8b05d PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. Machine learning gives computers the ability to learn without being explicitly programmed. It encompasses a broad range of approaches to data analysis with applicability across the biological sciences. Lectures will introduce commonly used algorithms and provide insight into their theoretical underpinnings. In the practicals students will apply these algorithms to real biological data-sets using the R language and environment. Please be aware that the course syllabus is currently being updated following feedback from the last event; therefore the agenda below will be subjected to changes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3590664&amp;course-title=An%20Introduction%20to%20Machine%20Learning).'' 2020-11-23 09:30:00 UTC 2020-11-25 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Machine learning Data mining University of Cambridge Bioinformatics Training [] This is aimed at life scientists with little or no experience in machine learning and that are looking at implementing these approaches in their research.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Protein Structure Analysis, winter session

    30 November 2020 - 19 March 2021

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, winter session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-winter-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-11-30 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • CABANA Workshop: Applied bioinformatics, molecular epidemiology, and the SARS-CoV-2 Pandemic

    1 - 4 December 2020

    Hinxton, United Kingdom

    Elixir node event
    CABANA Workshop: Applied bioinformatics, molecular epidemiology, and the SARS-CoV-2 Pandemic https://tess.elixir-europe.org/events/cabana-workshop-applied-bioinformatics-molecular-epidemiology-and-the-sars-cov-2-pandemic This workshop will provide training on the use of bioinformatic tools for the design and analysis of SARS-CoV-2 sequences. 2020-12-01 08:45:00 UTC 2020-12-04 12:00:00 UTC Virtual, Hinxton, United Kingdom Virtual Hinxton United Kingdom CB10 1SD [] Piraveen Gopalasingam [] [] [] [] HDRUK
  • Managing your Research Data (Online)

    1 December 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing your Research Data (Online) https://tess.elixir-europe.org/events/managing-your-research-data-online PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. How much data would you lose if your laptop was stolen? Have you ever emailed your colleague a file named 'final_final_versionEDITED'? Have you ever struggled to import your spreadsheets into R? Would you be able to write a Data Management Plan as part of a grant proposal? As a researcher, you will encounter research data in many forms, ranging from measurements, numbers and images to documents and publications. Whether you create, receive or collect data, you will certainly need to organise it at some stage of your project. This workshop will provide an overview of some basic principles on how we can work with data more effectively. We will discuss the best practices for research data management and organisation so that our research is auditable and reproducible by ourselves, and others, in the future. Course materials are available [here](https://datachampcam.github.io/avoid-data-disaster/) This event is part of a series of training courses organized in collaboration with the Bioinformatics Core Facility at [CRUK Cambridge Institute](http://www.cruk.cam.ac.uk/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3593322&amp;course-title=Managing%20your%20Research%20Data).'' 2020-12-01 10:00:00 UTC 2020-12-01 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • DDA and DIA proteomic analysis in Galaxy

    3 - 4 December 2020

    Ghent, Belgium

    Elixir node event
    DDA and DIA proteomic analysis in Galaxy https://tess.elixir-europe.org/events/label-free-proteomics-data-analysis-in-galaxy At the beginning of the course we will introduce you to the Galaxy platform and teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.  Then, we will dive into proteomic analyses which are split up into two parts. First, we will use MaxQuant to analyze classical proteomic shotgun (label-free data dependent acquisition = DDA) data. MaxQuant is a standalone tool that enables peptide and protein identification as well as quantification.  In the second part we will perform a complete analysis workflow for data independent acquisition (DIA) data using a variety of open-source tools (including diapysef, OpenSwath, Pyprophet, MSstats). This includes generating a peptide library, refining the library and utilizing the library to identify and quantify peptides in DIA data.  2020-12-03 09:00:00 UTC 2020-12-04 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • CABANA: Genomic Data for Surveillance of Communicable Disease

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Genomic Data for Surveillance of Communicable Disease https://tess.elixir-europe.org/events/cabana-genomic-data-for-surveillance-of-communicable-disease This course will develop skills in the analysis of field-collected microbial genomes samples and how to use data this genomic in the surveillance of communicable diseases. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Next Generation Sequencing Bioinformatics

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    Next Generation Sequencing Bioinformatics https://tess.elixir-europe.org/events/next-generation-sequencing-bioinformatics-8bb1d757-0644-44ce-b8f0-29dafc320ce2 This course will provide an introduction to the technology, analysis workflows, tools and resources for next generation sequencing data analysis. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • CABANA: Genomic data for surveillance of communicable disease (Cancelled)

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Genomic data for surveillance of communicable disease (Cancelled) https://tess.elixir-europe.org/events/cabana-genomic-data-for-surveillance-of-communicable-disease-cancelled This course has been cancelled. We apologise for any inconvenience caused. This course will develop skills in the analysis of field-collected microbial genomes samples and how to use data this genomic in the surveillance of communicable diseases. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Winter School - Bioinformatics Data Exploration for Biologists: An introduction to Data Exploration, Statistics and Reproducibility

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    Winter School - Bioinformatics Data Exploration for Biologists: An introduction to Data Exploration, Statistics and Reproducibility https://tess.elixir-europe.org/events/winter-school-bioinformatics-data-exploration-for-biologists-an-introduction-to-data-exploration-statistics-and-reproducibility This 1-week course provides an introduction to data exploration of biological data. It provides a learning journey starting with learning about how we can automate processes that can be reproduced to analyse our biological data. The course will begin with discussing what opportunities and challenges are associated with aspects of bioinformatics analyses. We will address a subset of them in greater detail in the central part of the course and provide time for participants to practise using some of the associated bioinformatics tools. Focusing on solutions around handling biological data, we will cover programming in R, version control, statistical analyses, and data exploration. The R component of the course will cover from the foundations of programming in R to how to use some of the most popular R packages (dplyr and ggplot2) for data manipulation and visualisation. No prior R experience or previous knowledge of programming is required. At the end of the course we will address issues relating to reusability and reproducibility. More information about the course can be found [here](https://e.issuu.com/anonymous-embed.html?u=bioinfocambs&amp;d=bioinformaticsforbiologists_dec2020). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3353700&amp;course-title=Winter%20School%20DEB).'' 2020-12-07 09:30:00 UTC 2020-12-11 17:15:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] This course is aimed at individuals working across biological and biomedical sciences who have little or no experience in bioinformatics.Applicants are expected to have an interest in learning about bioinformatics and/or are in the beginning stages of using bioinformatics in their research with the need to develop their skills and knowledge further.No previous knowledge of programming is required for this course.The course is open to Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals<span style="color:#0000FF"> Non-members of the University of Cambridge to pay £575 </span style><span style="color:#0000FF">All Members of the University of Cambridge to pay £250 </span style> <span style="color:#FF0000">A booking will only be approved and confirmed once the fee has been paid in full.</span style> workshops_and_courses [] HDRUK
  • Translational Immunology

    8 - 9 December 2020

    Gent, Belgium

    Translational Immunology https://tess.elixir-europe.org/events/translational-immunology-fe17b83a-fab1-413f-94c3-9c6a1ecac893 Translational Immunology 8-9 DECEMBER 2020, GHENT, BELGIUM Due to the Coronavirus, Translational Immunology and the satellite BIS meeting were postponed from 26-27 March 2020 to the end of the year. We are happy to confirm the new date: 8-9 December 2020. The aim of this conference is to bridge the translational gap in immunopathology, bringing together clinicians, research scientists and industry partners to discuss prominent advances from the bench to the clinic. The different sessions will have a particular focus on precision medicine in general, starting from disease-oriented cases and lessons learned. Innovative and alternative therapeutic strategies in immune-mediated disorders will be presented, besides the regulatory challenges that companies and researchers are dealing with. Deadlines: - Abstract submission: 5 October 2020 - Early Bird deadline: 27 October 2020 - Late Registration deadline: 24 November 2020 Speakers: Rosa Bacchetta Stanford Medicine, US Dirk Elewaut VIB-UGent Center for Inflammation Research, BE Alain Fischer Assistance publique – Hôpitaux de Paris, FR Martin Guilliams VIB-UGent Center for Inflammation Research, BE Pleun Hombrink Sanquin, NL Bengt Hoepken Clinical Program Director, UCB Pharma, DE Isabelle Huys KU Leuven, BE Christophe Lahorte National Innovation Office &amp; Scientific-Technical Advice Unit - (Famhp), BE Bart Lambrecht VIB-UGent Center for Inflammation Research, BE Antonio Lanzavecchia Institute for Research in Biomedicine, CH Sophie Lucas de Duve Institute, UCLouvain, BE Bénédicte Machiels FARAH Center, ULiège, BE Melanie Matheu CEO, Founder at Prellis Biologics, Inc., US Massimiliano Mazzone VIB-KU Leuven Center for Cancer Biology, BE Kathy McCoy University of Calgary, CA Eoin McKinney University of Cambridge, UK Fiona Powrie Kennedy Institute of Rheumatology, University of Oxford, UK Federica Sallusto Institute for Research in Biomedicine, CH Georg Schett Friedrich-Alexander University Erlangen-Nürnberg, DE Marvin van Luijn Erasmus MC, University Medical Center Rotterdam MS Center ErasMS, NL Location: De Bijloke, Jozef Kluyskensstraat 2, 9000 Gent Hashtag: #TransImmu20 2020-12-08 09:00:00 UTC 2020-12-09 17:00:00 UTC VIB Conferences Music Center De Bijloke, 2, Jozef Kluyskensstraat, Gent, Belgium Music Center De Bijloke, 2, Jozef Kluyskensstraat Gent Oost-Vlaanderen Belgium 9000 Immunoprecipitation experiment Immunology Immunoproteins, genes and antigens [] [] PhDPhD studentsAcademicsindustry 600 meetings_and_conferences [] ImmunologyImmunogenicityImmunogenomicsMetabolism of Immune Cellsantibodiestherapeutic antibodies
  • Introduction to Git & GitHub

    10 December 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-tbc-autumn Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up &amp; configurations Working locally: Create a repository, clone, edit, staging commits, commit &amp; push Working with your history &amp; logs Working in a project: Forking, branching &amp; pull requests How to version control your code in Rstudio with GitHub 2020-12-10 09:00:00 UTC 2020-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • CONVERGE: Impact workshop

    15 December 2020

    Hinxton, United Kingdom

    CONVERGE: Impact workshop https://tess.elixir-europe.org/events/converge-impact-workshop 2020-12-15 09:00:00 UTC 2020-12-15 17:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] workshops_and_courses [] []
  • CONVERGE: Industry workshop

    16 December 2020

    Hinxton, United Kingdom

    CONVERGE: Industry workshop https://tess.elixir-europe.org/events/converge-industry-workshop 2020-12-16 09:00:00 UTC 2020-12-16 15:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] workshops_and_courses [] []
  • Single-cell RNA-seq analysis using R

    1 - 5 February 2021

    Cambridge, United Kingdom

    Elixir node event
    Single-cell RNA-seq analysis using R https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-using-r-9cf828d9-f622-4e43-af35-fb3c11abac0b This course covers the analysis of scRNA-seq data using R and command line tools. 2021-02-01 09:45:00 UTC 2021-02-05 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK

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