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22 events found

Country: Spain  or Netherlands 

and

Keywords: eLearning  or Genome Mapping  or SystemsBiology  or Workflows  or linux  or HDRUK 

  • Nuclear receptors

    16 - 20 September 2011

    Sitges, Spain

    Nuclear receptors https://tess.elixir-europe.org/events/nuclear-receptors 2011-09-16 00:00:00 UTC 2011-09-20 00:00:00 UTC EMBO Hotel Melia Sitges, Sitges, Spain Hotel Melia Sitges Sitges Spain Genomics [] [] [] meetings_and_conferences [] DiseasesSystemsBiology
  • 30 years of Wnt signalling

    27 June - 1 July 2012

    Egmond aan Zee, Netherlands

    30 years of Wnt signalling https://tess.elixir-europe.org/events/30-years-of-wnt-signalling 2012-06-27 00:00:00 UTC 2012-07-01 00:00:00 UTC EMBO Egmond aan Zee, Netherlands Egmond aan Zee Netherlands Genomics [] [] [] meetings_and_conferences [] SystemsBiology
  • Microarray Analysis using R and Bioconductor - Maastricht, Netherlands

    28 - 30 January 2014

    Maastricht, Netherlands

    Elixir node event
    Microarray Analysis using R and Bioconductor - Maastricht, Netherlands https://tess.elixir-europe.org/events/microarray-analysis-using-r-and-bioconductor-maastricht-netherlands This course will provide an introduction to microarray data analysis and training in how to perform simple analyses using R/Bioconductor. 2014-01-28 09:00:00 UTC 2014-01-30 00:00:00 UTC Maastricht University, Maastricht, Netherlands Maastricht University Maastricht Netherlands 6211 LK [] Holly Foster [] [] [] [] HDRUK
  • EMBL-EBI Bioinformatics Workshop (Girona, Spain)

    1 July 2014

    Girona, Spain

    Elixir node event
    EMBL-EBI Bioinformatics Workshop (Girona, Spain) https://tess.elixir-europe.org/events/embl-ebi-bioinformatics-workshop-girona-spain An introduction to EMBL-EBI, the data and services it provides and the resources available for life scientists to use. 2014-07-01 09:00:00 UTC 2014-07-01 00:00:00 UTC University of Girona, Girona, Spain University of Girona Girona Spain 17004 [] Rebecca Greenhaff [] [] [] [] HDRUK
  • Ensembl Browser Workshop - Erasmus MC - Rotterdam

    22 January 2015

    Rotterdam, Netherlands

    Elixir node event
    Ensembl Browser Workshop - Erasmus MC - Rotterdam https://tess.elixir-europe.org/events/ensembl-browser-workshop-erasmus-mc-rotterdam Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2015-01-22 09:00:00 UTC 2015-01-22 00:00:00 UTC Erasmus MC Rotterdam, Rotterdam, Netherlands Erasmus MC Rotterdam Rotterdam Netherlands 3015 CE [] Giulietta Spudich [] [] [] [] HDRUK
  • Ensembl browser workshop – Erasmus MC 2016

    22 - 23 March 2016

    Rotterdam, Netherlands

    Elixir node event
    Ensembl browser workshop – Erasmus MC 2016 https://tess.elixir-europe.org/events/ensembl-browser-workshop-erasmus-mc-2016 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2016-03-22 13:00:00 UTC 2016-03-23 13:00:00 UTC Erasmus MC Rotterdam, Rotterdam, Netherlands Erasmus MC Rotterdam Rotterdam Netherlands 3015 CE [] Helen Sparrow [] [] [] [] HDRUK
  • Ensembl Browser Workshop – Madrid April 2016

    4 - 5 April 2016

    Madrid, Spain

    Elixir node event
    Ensembl Browser Workshop – Madrid April 2016 https://tess.elixir-europe.org/events/ensembl-browser-workshop-madrid-april-2016 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and retrieve these data with BioMart. 2016-04-04 09:30:00 UTC 2016-04-05 13:00:00 UTC Centro Nacional de Investigaciones Oncologicas, Madrid, Spain Centro Nacional de Investigaciones Oncologicas Madrid Spain E-28029 [] Denise Carvalho-Silva [] [] [] [] HDRUK
  • Ensembl Browser Workshop, CRG Barcelona, 25th May 2016

    25 May 2016

    Barcelona, Spain

    Elixir node event
    Ensembl Browser Workshop, CRG Barcelona, 25th May 2016 https://tess.elixir-europe.org/events/ensembl-browser-workshop-crg-barcelona-25th-may-2016 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2016-05-25 09:30:00 UTC 2016-05-25 09:30:00 UTC Centre for Genomic Regulation, Barcelona, Spain Centre for Genomic Regulation Barcelona Spain 08003 [] Helen Sparrow [] [] [] [] HDRUK
  • Connect with EMBL-EBI at ECCB 2016

    3 - 7 September 2016

    The Hague, Netherlands

    Elixir node event
    Connect with EMBL-EBI at ECCB 2016 https://tess.elixir-europe.org/events/connect-with-embl-ebi-at-eccb-2016 Join us at the 15th European Conference on Computational Biology, EBBC 2016, in The Hague! Co-organised by ELIXIR, the Dutch Tech Centre for Life Sciences and the BioSB Research School, ECCB is the biggest computational biology event in 2016. Held in association with the Vrij Universiteit Amsterdam and the Delft University of Technology, this major networking and scientific event brings together scientists working in a variety of disciplines, including bioinformatics, computational biology, biology, medicine, and systems biology. Official website: www.eccb2016.org/ 2016-09-03 09:45:00 UTC 2016-09-07 09:45:00 UTC World Forum Convention Centre, The Hague, Netherlands World Forum Convention Centre The Hague Netherlands 2517 JW [] Katrina Costa [] [] [] [] HDRUK
  • BioExcel: Workflow Training for Computational Biomolecular Research

    20 - 21 October 2016

    Barcelona, Spain

    Elixir node event
    BioExcel: Workflow Training for Computational Biomolecular Research https://tess.elixir-europe.org/events/bioexcel-workflow-training-for-computational-biomolecular-research-3ab3cc23-6baa-4ae1-a081-e36a492fb7f4 Complex scientific studies require elaborate software pipelines necessitating interconnection of different tools and sources of data. In some cases, the complexity of the pipeline forces the definition of process dependencies, especially when those processes can be launched asynchronously in High Performance Computing (HPC) systems. Workflow managers such as Galaxy, Apache Taverna, PyCOMPSs, KNIME or Copernicus can be used to tackle this particular issue. 2016-10-20 09:00:00 UTC 2016-10-21 18:00:00 UTC Barcelona Supercomputing Center, Barcelona, Spain Barcelona Supercomputing Center Barcelona Spain 08034 [] Charlotte Pearton [] [] [] [] HDRUK
  • ISCB NGS 2017: Accessing structural variation and population genomics data in Ensembl

    5 April 2017

    Barcelona, Spain

    Elixir node event
    ISCB NGS 2017: Accessing structural variation and population genomics data in Ensembl https://tess.elixir-europe.org/events/iscb-ngs-2017-accessing-structural-variation-and-population-genomics-data-in-ensembl Work with the Ensembl Outreach team to get hands-on experience accessing structural variation and population genomics data with the Ensembl genome browser and using the Variant Effect Predictor (VEP) 2017-04-05 10:00:00 UTC 2017-04-05 10:00:00 UTC Centre for Genomic Regulation, Barcelona, Spain Centre for Genomic Regulation Barcelona Spain 08003 [] Benjamin Moore [] [] [] [] HDRUK
  • ELIXIR-EXCELERATE HPC Train-the-Researcher course

    6 - 7 April 2017

    Málaga, Spain

    Elixir node event
    ELIXIR-EXCELERATE HPC Train-the-Researcher course https://tess.elixir-europe.org/events/elixir-excelerate-hpc-train-the-researcher-course-3af9b3c7-94a5-46ae-a68c-1c73b87049ab ELIXIR-EXCELERATE HPC Train-the-Researcher course, Apr 6-7, 2017, Malaga, Spain 2017-04-06 09:00:00 UTC 2017-04-07 17:00:00 UTC Escuela Técnica Superior de Ingeniería Informática Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur, Málaga, Spain Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur Málaga Málaga Spain Computational biology Computer science Escuela Técnica Superior de Ingeniería Informática, University of Malaga [] life scientistsResearchers workshops_and_courses registration_of_interest high-performance computingtrainingeLearningEeLP
  • EMBL-EBI: Exploring genomic, protein and chemical data, Oviedo

    15 - 19 May 2017

    Oviedo, Spain

    Elixir node event
    EMBL-EBI: Exploring genomic, protein and chemical data, Oviedo https://tess.elixir-europe.org/events/embl-ebi-exploring-genomic-protein-and-chemical-data-oviedo Participants will explore EMBL-EBI resources for genome browsing, gene expression, protein structure and protein-ligand interactions, diseases, targets and small molecules to illustrate how to navigate from one tool to the other. Activities will include presentations by the trainers, demonstrations and practical exercises by trainees to illustrate the use of the tools. Case studies will be used to demonstrate how to access relevant data and help answer research questions. 2017-05-15 09:00:00 UTC 2017-05-19 16:00:00 UTC University of Oviedo, Oviedo, Spain University of Oviedo Oviedo Spain 33003 [] Frank O’Donnell [] [] [] [] HDRUK
  • Bioinformatics for Molecular Biologists (4-day course)

    29 May - 2 June 2017

    Alcobendas, Spain

    Bioinformatics for Molecular Biologists (4-day course) https://tess.elixir-europe.org/events/bioinformatics-for-molecular-biologists-4-day-course-56d73c61-6703-4c8f-b7c7-91a8ec441a91 Over 4 days you will explore the open source world associated to bioinformatics with our experts. You will be introduced with various topics, from the basics of Linux, to widely used programming languages such as Perl™ and Python™ and the world’s most popular open source database MySQL™. A well balanced combination of lectures and practical sessions will reinforce new learning progressively building momentum towards a practical project where the newly acquired knowledge will be applied. New powerful options will be introduced to give you more confidence when handling large datasets. Ultimately, you will discover what’s beyond rigid user interfaces and apply your learning with real data. • Manage your own database (create your knowledge base). Free yourself from spreadsheets! • Personalise your analysis beyond options. Available in Torrent Browser or Ion Reporter™ software •Parse your VCF (extract information from flat files). Compare different samples and find the most common variants 2017-05-29 13:04:00 UTC 2017-06-02 13:04:00 UTC Thermo Fisher Scientific Avenida de la Vega, 1, Alcobendas, Spain Avenida de la Vega, 1 Alcobendas Madrid Spain 28108 [] learn-europe@thermofisher.com [] [] 6 [] first_come_first_served bioinformaticsPython for Biologistslinuxperl
  • Ensembl Browser workshop, University of the Basque Country (UPV/EHU), 13th-14th July 2017

    13 - 14 July 2017

    Plentzia, Spain

    Elixir node event
    Ensembl Browser workshop, University of the Basque Country (UPV/EHU), 13th-14th July 2017 https://tess.elixir-europe.org/events/ensembl-browser-workshop-university-of-the-basque-country-upv-ehu-13th-14th-july-2017 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation and comparative genomics data, and mine these data with BioMart. 2017-07-13 13:00:00 UTC 2017-07-14 13:00:00 UTC EHU/UPV PiE, Plentzia, Spain EHU/UPV PiE Plentzia Spain 48620 [] Eider Bilbao [] [] [] [] HDRUK
  • EMBL-EBI Bioinformatics Workshop, Institute of Neuroscience, Alicante

    27 September 2017

    Alicante, Spain

    Elixir node event
    EMBL-EBI Bioinformatics Workshop, Institute of Neuroscience, Alicante https://tess.elixir-europe.org/events/embl-ebi-bioinformatics-workshop-institute-of-neuroscience-alicante This course will provide participants with an introduction to EMBL-EBI and its public data resources, with a focus on functional genomics (e.g. microarray expression profiling, RNA-seq, ChIP-seq). 2017-09-27 09:00:00 UTC 2017-09-27 12:45:00 UTC Institute of Neuroscience (INA), Alicante, Spain Institute of Neuroscience (INA) Alicante Spain 03550 [] Felix Viana de la Iglesia [] [] [] [] HDRUK
  • EMBL-EBI Bioinformatics workshop, SENC Neuroscience Congress, Alicante

    28 September 2017

    Alicante, Spain

    Elixir node event
    EMBL-EBI Bioinformatics workshop, SENC Neuroscience Congress, Alicante https://tess.elixir-europe.org/events/embl-ebi-bioinformatics-workshop-senc-neuroscience-congress-alicante This course is designed to highlight the importance of data reproducibility and introduce researchers to EMBL-EBI bioinformatics resources. 2017-09-28 12:00:00 UTC 2017-09-28 19:30:00 UTC ADDA (Auditorio de la Diputación de Alicante), Alicante, Spain ADDA (Auditorio de la Diputación de Alicante) Alicante Spain 03010 [] Felix Viana de la Iglesia [] [] [] [] HDRUK
  • Ensembl Browser workshop, University of the Basque Country, 2nd-5th October 2017

    2 - 5 October 2017

    Bilbao, Spain

    Elixir node event
    Ensembl Browser workshop, University of the Basque Country, 2nd-5th October 2017 https://tess.elixir-europe.org/events/ensembl-browser-workshop-university-of-the-basque-country-2nd-5th-october-2017 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2017-10-02 15:30:00 UTC 2017-10-05 19:30:00 UTC University of the Basque Country, Bilbao, Spain University of the Basque Country Bilbao Spain 48940 Lejona [] Benjamin Moore [] [] [] [] HDRUK
  • Ensembl Browser workshop, Rotterdam, The Netherlands, 13-14 February 2018

    13 - 14 February 2018

    Rotterdam, Netherlands

    Elixir node event
    Ensembl Browser workshop, Rotterdam, The Netherlands, 13-14 February 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-rotterdam-the-netherlands-13-14-february-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. Learn about Ensembl tools and advanced access. 2018-02-13 09:30:00 UTC 2018-02-14 17:00:00 UTC Erasmus MC Rotterdam, Rotterdam, Netherlands Erasmus MC Rotterdam Rotterdam Netherlands 3015 CE [] Frank van Vliet [] [] [] [] HDRUK
  • International Post-graduate Course Variant Effect Prediction: Ensembl genome browser & Variant Effect Predictor (VEP) modules, Breda, The Netherlands, 10 - 13 April 2018

    11 - 12 April 2018

    Breda, Netherlands

    Elixir node event
    International Post-graduate Course Variant Effect Prediction: Ensembl genome browser & Variant Effect Predictor (VEP) modules, Breda, The Netherlands, 10 - 13 April 2018 https://tess.elixir-europe.org/events/international-post-graduate-course-variant-effect-prediction-ensembl-genome-browser-variant-effect-predictor-vep-modules-breda-the-netherlands-10-13-april-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene and variation data, and use the Variant Effect Predictor. 2018-04-11 12:00:00 UTC 2018-04-12 17:15:00 UTC Avans Hogeschool Breda, Breda, Netherlands Avans Hogeschool Breda Breda Netherlands 4800 [] Astrid Gall [] [] [] [] HDRUK
  • Workshop on Research Objects (RO2018)

    29 October 2018

    Amsterdam, Netherlands

    Workshop on Research Objects (RO2018) https://tess.elixir-europe.org/events/workshop-on-research-objects-ro2018 In this workshop we will explore recent advancements in Research Objects and publishing of research data. **Deadlines**: * 2018-07-01 Abstracts due * 2018-07-15 Research articles and software/data articles due A travel bursary is available for accepted speakers, sponsored by [BioExcel](http://bioexcel.eu) (H2020-675728) ## Research Objects Scholarly Communication has evolved significantly in recent years, with an increasing focus on **Open Research**, [FAIR](https://doi.org/10.1038/sdata.2016.18)data sharing and community-developed open source methods. A question remains on how to publish, archive and explore digital research outputs. A number of initiatives have begun to explore how to package and describe research outputs, data, methods, workflows, provenance and structured metadata, reusing existing Web standards and formats. Such efforts aim to address the challenges of structuring multi-part research outcomes with their context, handling distributed and living content and porting and safely exchange what we collectively can call **Research Objects** between platforms and between researchers. In the workshop **RO2018**, part of [IEEE eScience 2018](https://www.escience2018.com) in Amsterdam, we will explore recent advancements in Research Objects and publishing of research data with peer-reviewed presentations, invited talks, short demos, lightning talks and break-out sessions to further build relationships across scientific domains and RO practitioners. ## Call for Papers RO2018 welcomes submissions of academic abstracts (1-2 pages), data/software articles (3-6 pages) and short research articles (4-8 pages) on cross-cutting case studies or specific research on topics including, but not limited to: FAIR metrics; platforms, infrastructure and tools; lifecycles; access control and secure exchange; examples of exploitation and application; executable containers; metadata, packaging and formats; credit, attribution and peer review; dealing with scale and distribution; driving adoption within current scholarly communications and alignments with community efforts; and domain-specific and cross-domain Research Objects. Further details on submitting: [http://www.researchobject.org/ro2018/submitting-to-ro2018/](http://www.researchobject.org/ro2018/submitting-to-ro2018/) ## Timeline 2018-07-01 Abstracts due 2018-07-15 Research articles and software/data articles due 2018-08-31 Notification of acceptance 2018-08-31 IEEE eScience 2018 early-bird registration deadline 2018-10-29 RO2018 workshop at IEEE eScience 2018 2018-10-29 09:00:00 UTC 2018-10-29 17:00:00 UTC The University of Manchester, researchobject.org, IEEE Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade, Amsterdam, Netherlands Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade Amsterdam Amsterdam Netherlands Workflows Software engineering Ontology and terminology Informatics Data submission, annotation and curation Data identity and mapping Data integration and warehousing Data architecture, analysis and design Data management Computer science [] For any questions, email the Workshop Organizers at ro2018@easychair.org BioExcel [] workshops_and_courses [] digital archivesdata repositorylinked dataWorkflows
  • Nextflow 2019

    17 - 20 September 2019

    Barcelona, Spain

    Elixir node event
    Nextflow 2019 https://tess.elixir-europe.org/events/nextflow-2019 **Create. Deploy. Share.** Nextflow is a popular workflow management solution that allows scientists and engineers to create data-driven applications which can be effortlessly scaled across clusters and clouds. It simplifies the writing of complex distributed computational workflows in a portable and replicable manner. Nextflow allows the seamless parallelization and deployment of any existing application with minimal development and maintenance overhead, irrespective of the original programming language. Containerisation technologies and inbuilt executors for the most popular cluster systems (SLURM, PBS, UGE, LSF, etc) and cloud infrastructure (AWS Batch & Google Cloud Platform) ensures unrivalled deployment. The built-in support for code repositories provides code sharing for the collaborations that matter most and enable your applications to touch the world. But most of all, the active community of that has formed around Nextflow provides inspirational, best-in-class technical examples from global leaders in workflow deployment as well as lasting relationships in a growing community. __Nextflow Training - 17th and 18th September 2019__ The week kicks off with a two-day intensive workshop intended for Nextflow beginners and intermediate users. In these practical sessions, participants learn about Nextflow technology starting from basic through to advanced concepts, with the expectation they will acquire the proficiency to develop and deploy their own workflows. The workshop will be provided across 14 topics including processes, operators, executors, containers and best practices. A GitHub repository will be provided with all the necessary material and software as well as AWS cloud instances for running the deployments in the relevant practical sessions. The audience is expected to have at least some prior basic command line experience. __Nextflow Camp - 19th and 20th September 2019__ Nextflow Camp brings together the Nextflow community of developers and users to discuss the state of Nextflow technology, the latest developments and tackle the open questions in a collaborative manner. Each day is split between talks from Nextflow experts and tutorial breakout sessions where participants get a flavour for the possibilities for their own applications. We hope to see you in Barcelona in September! 2019-09-17 09:00:00 UTC 2019-09-20 18:00:00 UTC Paolo Di Tommaso PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader, Barcelona, Spain PRBB Parc de Recerca Biomèdica de Barcelona, 88, Carrer del Doctor Aiguader Barcelona Barcelona Spain 08003 Centre for Genomic Regulation training@crg.eu AWS Bioinformaticians 50 meetings_and_conferencesworkshops_and_courses first_come_first_served NextflowWorkflowsContainersCloud ComputingHPC
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