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12 events found

Organizer: VIB Bioinformatics Core 

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Node: Belgium 

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Content provider: VIB Bioinformatics Core 

  • Image processing for correlated and multimodal imaging techniques

    19 October 2020 - 9 March 2021

    Elixir node event
    Image processing for correlated and multimodal imaging techniques https://tess.elixir-europe.org/events/image-processing-for-correlated-and-multimodal-imaging-techniques The purpose of this event is to dedicate three days of intense training to an audience with little or basic expertise. The program will first cover a full day of online lectures (19 October 2020), followed by two days of hands-on training (8 & 9 March 2021, Ghent). 2020-10-19 09:00:00 UTC 2021-03-09 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Bulk RNASeq: from counts to differential expression

    24 November - 1 December 2020

    Elixir node event
    Bulk RNASeq: from counts to differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-from-counts-to-differential-expression-eea507f0-2ad6-4e12-83ca-71f9f9101a4a The course will show: R tools to generate count files like featureCounts, and summarizeOverlaps are demonstrated Count files from HTSeq-Count, FeatureCounts, Salmon or Kallisto are used to identify differentially expressed genes After the live session participants can analyze their own count files. Issues can be handled during the Q&A session. 2020-11-24 09:00:00 UTC 2020-12-01 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Research Software Developers Day

    3 December 2020

    Elixir node event
    Research Software Developers Day https://tess.elixir-europe.org/events/research-software-engineers-conference The aim of this conference is to foster a community of research software developers and to collectively improve the standard of software used for scientific research. For this, our first edition, we focus on three main themes: reproducibility, software quality and infrastructure. The deadline for submissions of talks and workshop proposals has passed, however if you have something to say, whether broadly related to the topics mentioned above or not, we kindly request you to prepare for a lightning talk.  If you're interested in one of the workshops we kindly ask you to register via this link. Each workshop is limited to 20 participants and registrations will work on a first come, first served basis. You will receive more practical information regarding the workshops before the event.  The schedule is accessible at www.be-rse.org/.  2020-12-03 09:00:00 UTC 2020-12-03 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • DDA and DIA proteomic analysis in Galaxy

    3 - 4 December 2020

    Ghent, Belgium

    Elixir node event
    DDA and DIA proteomic analysis in Galaxy https://tess.elixir-europe.org/events/label-free-proteomics-data-analysis-in-galaxy At the beginning of the course we will introduce you to the Galaxy platform and teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.  Then, we will dive into proteomic analyses which are split up into two parts. First, we will use MaxQuant to analyze classical proteomic shotgun (label-free data dependent acquisition = DDA) data. MaxQuant is a standalone tool that enables peptide and protein identification as well as quantification.  In the second part we will perform a complete analysis workflow for data independent acquisition (DIA) data using a variety of open-source tools (including diapysef, OpenSwath, Pyprophet, MSstats). This includes generating a peptide library, refining the library and utilizing the library to identify and quantify peptides in DIA data.  2020-12-03 09:00:00 UTC 2020-12-04 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to Git & GitHub

    10 December 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-tbc-autumn Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up & configurations Working locally: Create a repository, clone, edit, staging commits, commit & push Working with your history & logs Working in a project: Forking, branching & pull requests How to version control your code in Rstudio with GitHub 2020-12-10 09:00:00 UTC 2020-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Basic statistics in R, online

    14 December 2020 - 25 January 2021

    Elixir node event
    Basic statistics in R, online https://tess.elixir-europe.org/events/basic-statistics-in-r-online-winter-session This training gives an introduction to the use of the free statistical software language R. This introduction is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2020-12-14 09:00:00 UTC 2021-01-25 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Liquid-Liquid Phase Separation

    14 - 15 December 2020

    Elixir node event
    Liquid-Liquid Phase Separation https://tess.elixir-europe.org/events/liquid-liquid-phase-separation-09e3b786-957d-4d94-9513-3bcfeb0269b7 The aim of this training day is – after a brief introduction – to provide guidelines for accurate experimental characterization of LLPS processes in vitro and in cells. We will end the day with a discussion on the implications of dysregulation of liquid-liquid phase separation for human disease. We have invited top-notch speakers on this topic to inform you on the latest developments.   2020-12-14 09:00:00 UTC 2020-12-15 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Deep learning in biology

    17 - 18 December 2020

    Elixir node event
    Deep learning in biology https://tess.elixir-europe.org/events/deep-learning-in-biology-autumn-session Large amounts of data and compute resources have enabled the development of high-performance machine learning models. This is particularly due to deep learning techniques. By looking at many data samples, these models can find structure in the data that is useful for predictive and explorative analysis: e.g. classification, clustering, data generation, dimensionality reduction, etc. The most popular applications within biotechnology are concerned with image segmentation, diagnostics, sequence analysis, etc. However, deep learning models are far from straightforward to implement correctly due to the many different hyperparameter settings, optimization procedures, architecture choices, etc. In this course, we will make use of Jupyter Notebook and Keras, which are both based on Python, to apply deep learning techniques on both bio informatics and bio image informatics data. We aim to work towards applications that participants would like to study. 2020-12-17 09:00:00 UTC 2020-12-18 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to Protein Structure Analysis, winter session

    31 December 2020 - 19 March 2021

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, winter session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-winter-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-12-31 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to the analysis of NGS data, online

    8 - 22 January 2021

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, online https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-online This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2021-01-08 09:00:00 UTC 2021-01-22 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Reproducible data science with Snakemake

    11 January 2021

    Elixir node event
    Reproducible data science with Snakemake https://tess.elixir-europe.org/events/reproducible-data-science-with-snakemake 2021-01-11 09:00:00 UTC 2021-01-11 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Factorial design and analysis

    15 - 22 March 2021

    Elixir node event
    Factorial design and analysis https://tess.elixir-europe.org/events/factorial-design-and-analysis After attending this course, you will be able to reason about you experiment and come up with a design and analysis that fits your situations best, rather than to settle for a suboptimal textbook solution. 2021-03-15 09:00:00 UTC 2021-03-22 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []

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