67 events found
Content provider: VIB Bioinformatics Core
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RNASeq analysis for differential expression
11  18 February 2019
Leuven, Belgium
RNASeq analysis for differential expression http://www.vib.be/en/training/researchtraining/courses/Pages/RNASeqanalysisfordifferentialexpression.aspx https://tess.elixireurope.org/events/rnaseqanalysisfordifferentialexpressioningenepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R  RStudio  Bioconductor  various packages \n\r\n\r\n\n \r\nFamiliarity with \n \nRNAseq assembly\r\nRNAseq analysis for isoform detection\r\nRNAseq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core\n\r\n\n' 20190211 09:30:00 UTC 20190218 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
RNASeq analysis for differential expression, extra session
12  25 February 2019
Leuven, Belgium
RNASeq analysis for differential expression, extra session http://www.vib.be/en/training/researchtraining/courses/Pages/RNASeqanalysisfordifferentialexpression,extrasession.aspx https://tess.elixireurope.org/events/rnaseqanalysisfordifferentialexpressionextrasession b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using DESeq2.\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R  RStudio  Bioconductor  various packages \n\r\n\n \r\nFamiliarity with \n \nRNAseq assembly\r\nRNAseq analysis for isoform detection\r\nRNAseq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core\n\r\n\n' 20190212 09:30:00 UTC 20190225 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
Basic statistics theory
22 February 2019
Leuven, Belgium
Basic statistics theory http://www.vib.be/en/training/researchtraining/courses/Pages/Basicstatisticstheory.aspx https://tess.elixireurope.org/events/basicstatisticstheory b'After this basic statistics theory session, you should be able to:\r\nUnderstand basic statistical concepts and methods for statistical analysis of life sciences data\r\n\r\nChoose the correct statistical test for analyzing your data\n\r\n\n This training gives an introduction to the use of statistics for basic analyses of life sciences data. This training is a prerequisite introduction to a series of \r\nhandson trainings on the statistical analysis of life sciences data: \r\n\'Basic statistics in R\' and \'Basic statistics in Graphpad Prism\'.\r\n If you want to follow one of these trainings, you have to follow this \r\nintroduction. Ít will give you all the theoretical background that you need. Those that already have a strong statistical background may register directly for the \'Basic statistics in R, part II\' training. \n\r\n\r\n\r\n\n No skills required. \n\r\n\n 9h3012h30: Theoretical background\r\n\n' 20190222 09:30:00 UTC 20190222 16:30:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
Analyzing flow cytometry data in FlowJo
25 February 2019
Ghent (SintDenijsWestrem), Belgium
Analyzing flow cytometry data in FlowJo http://www.vib.be/en/training/researchtraining/courses/Pages/AnalyzingflowcytometrydatainFlowJo.aspx https://tess.elixireurope.org/events/analyzingflowcytometrydatainflowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multiplatform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 20190225 09:30:00 UTC 20190225 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (SintDenijsWestrem), Belgium Holiday Inn Gent Expo Ghent (SintDenijsWestrem) Belgium 9051 [] [] [] [] [] [] 
Advanced FlowJo training
26 February 2019
Gent (SintDenijsWestrem), Belgium
Advanced FlowJo training http://www.vib.be/en/training/researchtraining/courses/Pages/AdvancedFlowJotraining.aspx https://tess.elixireurope.org/events/advancedflowjotraining b'\nParticipants must have experience with FlowJo. If you\'re new to the software you can attend our FlowJo introduction training first. \r\n\n \r\n\r\n\n' 20190226 09:30:00 UTC 20190226 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Ghent Expo, Gent (SintDenijsWestrem), Belgium Holiday Inn Ghent Expo Gent (SintDenijsWestrem) Belgium 9051 [] [] [] [] [] [] 
Basic statistics in R
11  18 March 2019
GENT, Belgium
Basic statistics in R http://www.vib.be/en/training/researchtraining/courses/Pages/IntroductiontoR.aspx https://tess.elixireurope.org/events/basicstatisticsinr b'\n\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, ttests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This\r\n training is an introduction to the use of R and RStudio and stops at very basic \r\nanalyses (ttests and nonparametric equivalents). A full overview of statistical analyses in R including regression, \r\nANOVA will be given in the followup training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theory training. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry training, the single cell RNASeq and the bulk RNASeq training....\n\r\n\n' 20190311 09:30:00 UTC 20190318 17:00:00 UTC VIB Bioinformatics Core Clemenspoort, GENT, Belgium Clemenspoort GENT Belgium 9000 [] [] [] [] [] [] 
Using MOFA for integration of omics data
3 May 2019
Leuven, Belgium
Using MOFA for integration of omics data http://www.vib.be/en/training/researchtraining/courses/Pages/UsingMOFAforintegrationofomicsdata.aspx https://tess.elixireurope.org/events/usingmofaforintegrationofomicsdata 20190503 09:30:00 UTC 20190503 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
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