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67 events found

Content provider: VIB Bioinformatics Core 

  • Introduction to tidyverse R (Brussels)

    13 March 2018

    Bruxelles, Belgium

    Elixir node event
    Introduction to tidyverse R (Brussels) https://tess.elixir-europe.org/events/introduction-to-tidyverse-r-brussels 2018-03-13 13:00:00 UTC 2018-03-13 17:00:00 UTC ELIXIR Belgium Herman Teirlinck 01.47 - Jan van Ruusbroec, Bruxelles, Belgium Herman Teirlinck 01.47 - Jan van Ruusbroec Bruxelles Belgium 1000 [] [] [] [] [] []
  • Introduction to Biopython

    29 - 30 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython ​​Understand what Biopython is and what it can do. Learn how to get Biopython running. Learn how to retrieve data records from NCBI. Learn how to read and write sequence files. Learn how to run BLAST from Python and read the results. Learn how to read and write phylogenetic tree files. Learn how to read and write 3D structure files. Learn how to use the Biopython documentation, examples, and where to find help. Understand what alternatives to Biopython exist and what they can do.   Biopython is the best-known Python library to process biological data. This training is aimed to empower you to use Biopython to make your research more efficient. The first day of the training is to give an overview of Biopython. You are going to start with your first steps in Biopython on the command line. Afterwards, you will take a tour of the most important components: sequences, NCBI queries, BLAST, trees, and 3D structures. You will try each of these modules on practical examples. Please don't hesitate to ask questions about Python basics or particular data formats (e.g. XML or NGS data). The second day of the training is to broaden your perspective: What other features does the library have? How can you use the documentation effectively? What is Biopython not capable of?  What can I do to visualize my data? Are there alternatives? If you have your own data that you would like to work on with Biopython in more detail, there is room for that. For me, the most important thing is to identify concrete Python modules and functions that help you to get your research done. Participants are encouraged to submit a description of their research topic and/or the questions they would like to answer with Biopython. Additionally, participants can bring their own data that they would like to process in Python to the training. 2018-03-29 09:30:00 UTC 2018-03-30 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Ghent, Belgium BioAccelerator Ghent Belgium 9052 [] [] [] [] [] []
  • A tour of machine learning - Dimensionality reduction and clustering

    23 April 2018

    Gent, Belgium

    Elixir node event
    A tour of machine learning - Dimensionality reduction and clustering https://tess.elixir-europe.org/events/a-tour-of-machine-learning-dimensionality-reduction-and-clustering In this course, you will be introduced to two broad classes of data mining techniques that can be useful when dealing with high-dimensional data: techniques based on dimensionality reduction and techniques based on clustering. This course is intended for people with experience in R. 2018-04-23 09:30:00 UTC 2018-04-23 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Gent, Belgium BioAccelerator Gent Belgium 9052 [] [] [] [] [] []
  • My code changed and using Git I know where and when

    24 April 2018

    Ghent, Belgium

    Elixir node event
    My code changed and using Git I know where and when https://tess.elixir-europe.org/events/my-code-changed-and-using-git-i-know-where-and-when 2018-04-24 15:00:00 UTC 2018-04-24 18:00:00 UTC VIB Bioinformatics Core Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • Ensembl Browser Workshop

    4 May 2018

    Leuven, Belgium

    Elixir node event
    Ensembl Browser Workshop https://tess.elixir-europe.org/events/ensembl-browser-workshop-b667a41e-0be6-404c-b081-8798a934aef8 "There are probably quite few people out there who all assume that Ensembl today is the same as it was years ago. It is not. With many new features and datasets incorporated/interlinked, it offers data exploration like never before. This course was a very useful update on what Ensembl has become" Browser workshop, CRUK, April 2016 2018-05-04 09:30:00 UTC 2018-05-04 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Ensembl REST API Workshop

    14 May 2018

    Gent, Belgium

    Elixir node event
    Ensembl REST API Workshop https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-cacab7f0-969e-47e7-87d0-14b7e0115671 2018-05-14 09:30:00 UTC 2018-05-14 13:00:00 UTC VIB Bioinformatics Core BioAccelerator, Gent, Belgium BioAccelerator Gent Belgium 9052 [] [] [] [] [] []
  • Basic bioinformatics concepts, databases and tools

    4 - 18 June 2018

    Gent, Belgium

    Elixir node event
    Basic bioinformatics concepts, databases and tools https://tess.elixir-europe.org/events/basic-bioinformatics-concepts-databases-and-tools b'\r\n\nUnderstand the capabilities and pitfalls of bioinformatics.\r\nFunctioning of the most used bioinformatics algorithms and terms for reliable interpretation of the results.\r\nNavigate with confidence to numerous online data repositories. Know where to search for them.\r\nBasic analyses of single genes as well as groups of genes (gene lists)\n\r\n\r\n\n During this 3-day introduction to bioinformatics, we will take you along a guided tour that covers all basic aspects of biological sequence analysis. This workshop is an ideal opportunity to get familiar with bioinformatics and its many faces! At the end, you should be able to start tackling any basic bioinformatics problem: how to obtain relevant information about your gene, you know where to get the required sequence data, manipulate the sequences, and how basic software and algorithms function so you can fine-tune them in order the get the most out of your analysis.\r\n\n \n\nGenBank, SwissProt, RefSeq, Gene\r\nGQuery\r\nEnsembl\r\nUgene\n\r\nBLAST, OrthoMCL, EMBOSS Needle, EMBOSS Water, Muscle, WebLogo, iceLogo\r\nHMMER, PSIBLAST, PROSITE, SMART, InterPro\r\nmiRWalk, Pscan, Motiflab\r\nPrimer3 PLUS, Primer BLAST, OligoAnalyzer, Ambion siRNA finder\r\nEMBOSS, Mobyle, Expasy\r\nPDB, Yasara\r\nGO, AmiGO, QuickGO, KEGG, STRING, DAVID, ToppGene, EnrichR, WebGestalt, Cytoscape\r\nGEO, GEO2R, GEO DataSet Browser\r\nOMIM, Variant reporter, Genomic variation server\n\r\nBiomart\n\r\n​​​​​​​​\r\n\n' 2018-06-04 09:30:00 UTC 2018-06-18 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Gent, Belgium BioAccelerator Gent Belgium 9052 [] [] [] [] [] []
  • Data Carpentry June 2018

    12 - 13 June 2018

    Brussels, Belgium

    Elixir node event
    Data Carpentry June 2018 https://tess.elixir-europe.org/events/data-carpentry-june-2018 2018-06-12 09:30:00 UTC 2018-06-13 17:00:00 UTC ELIXIR Belgium Brussels, Belgium Brussels Belgium 1050 [] [] [] [] [] []
  • A tour of machine learning - classification

    12 June 2018

    Ghent, Belgium

    Elixir node event
    A tour of machine learning - classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification ok Python Numpy/Pandas 2018-06-12 09:30:00 UTC 2018-06-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Git for Humans (Leuven)

    20 June 2018

    Heverlee, Belgium

    Elixir node event
    Git for Humans (Leuven) https://tess.elixir-europe.org/events/git-for-humans-ef1cd0f7-1779-4f7f-9db5-b57336debc0a 2018-06-20 13:00:00 UTC 2018-06-20 16:30:00 UTC ELIXIR Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B01.35, Heverlee, Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B01.35 Heverlee Belgium 3001 [] [] [] [] [] []
  • Basic statistics in R, part II

    25 - 1 June 2018

    Gent, Belgium

    Elixir node event
    Basic statistics in R, part II https://tess.elixir-europe.org/events/basic-statistics-in-r-part-ii 2018-06-25 09:30:00 UTC 2018-06-01 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Gent, Belgium BioAccelerator Gent Belgium 9052 [] [] [] [] [] []
  • Git for humans

    25 June 2018

    Gent, Belgium

    Elixir node event
    Git for humans https://tess.elixir-europe.org/events/git-for-humans 2018-06-25 09:30:00 UTC 2018-06-25 12:30:00 UTC ELIXIR Belgium Campus: Boekentoren/Book Tower Room: Didacticum, Gent, Belgium Campus: Boekentoren/Book Tower Room: Didacticum Gent Belgium 9000 [] [] [] [] [] []
  • ELIXIR-EXCELERATE Train the Trainer

    20 - 21 August 2018

    Antwerp, Belgium

    Elixir node event
    ELIXIR-EXCELERATE Train the Trainer https://tess.elixir-europe.org/events/elixir-excelerate-train-the-trainer-7d8246fe-4e5a-46bb-9144-62bfe8a56aa8 ELIXIR-EXCELERATE Train the Trainer (TtT) workshop 2018-08-20 09:00:00 UTC 2018-08-21 17:00:00 UTC ELIXIR Belgium University of Antwerp Building: G Room: G.004, Antwerp, Belgium University of Antwerp Building: G Room: G.004 Antwerp Belgium 2020 [] [] [] [] [] []
  • Transcriptomics and Single Cell RNA-Seq Analysis

    26 - 31 August 2018

    Leuven, Belgium

    Elixir node event
    Transcriptomics and Single Cell RNA-Seq Analysis https://tess.elixir-europe.org/events/transcriptomics-and-single-cell-rna-seq-analysis-c68d0326-09c8-41a4-90d9-c38feeab6d45 2018-08-26 09:30:00 UTC 2018-08-31 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • VIB Community Meeting - Bioinformatics and Computational Biology

    6 September 2018

    Brussels, Belgium

    Elixir node event
    VIB Community Meeting - Bioinformatics and Computational Biology https://tess.elixir-europe.org/events/vib-community-meeting-bioinformatics-and-computational-biology b'\r\n\r\n\n \r\n\r\n\n \r\n\n' 2018-09-06 09:30:00 UTC 2018-09-06 16:00:00 UTC VIB Bioinformatics Core U-Residence, Brussels, Belgium U-Residence Brussels Belgium 1050 [] [] [] [] [] []
  • qPCR analysis using qbasePLUS

    10 September 2018

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    qPCR analysis using qbasePLUS https://tess.elixir-europe.org/events/qpcr-analysis-using-qbaseplus b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n \r\n\r\n\n' 2018-09-10 09:30:00 UTC 2018-09-10 16:30:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Public proteomics data reprocessing and the Tabloid Proteome

    10 October 2018

    Ghent, Belgium

    Elixir node event
    Public proteomics data reprocessing and the Tabloid Proteome https://tess.elixir-europe.org/events/public-proteomics-data-reprocessing-and-the-tabloid-proteome 2018-10-10 09:30:00 UTC 2018-10-10 17:00:00 UTC ELIXIR Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • Comparative genomics in eukaryotes

    16 October 2018

    Gent, Belgium

    Elixir node event
    Comparative genomics in eukaryotes https://tess.elixir-europe.org/events/comparative-genomics-in-eukaryotes-9b93222d-3432-4065-a24e-3b9be0337a6d b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n \r\n\r\n\n   9h30-11h00  Introduction + Gene family analysis\r\n\n' 2018-10-16 09:30:00 UTC 2018-10-16 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Gent, Belgium Bio-Accelerator Gent Belgium 9052 [] [] [] [] [] []
  • Mass spectrometry data processing

    22 - 23 October 2018

    Gent, Belgium

    Elixir node event
    Mass spectrometry data processing https://tess.elixir-europe.org/events/mass-spectrometry-data-processing 2018-10-22 09:30:00 UTC 2018-10-23 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Gent, Belgium BioAccelerator Gent Belgium 9052 [] [] [] [] [] []
  • Computing skills for reproducible research: Software Carpentry

    24 - 25 October 2018

    Ghent, Belgium

    Elixir node event
    Computing skills for reproducible research: Software Carpentry https://tess.elixir-europe.org/events/computing-skills-for-reproducible-research-software-carpentry After the workshop, participants will be able to: write and organise their own scripts for data analysis use version control to keep track of, and revert changes to their files run scripts from the command line 2018-10-24 09:00:00 UTC 2018-10-25 17:00:00 UTC ELIXIR Belgium Ghent, Ghent, Belgium Ghent Ghent East Flanders Belgium 9000 [] [] Researchers [] [] []
  • Linux for bioinformatics

    5 - 12 November 2018

    Ghent, Belgium

    Elixir node event
    Linux for bioinformatics https://tess.elixir-europe.org/events/linux-for-bioinformatics b'\nAfter this training you will\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nfeel comfortable using Linux \r\n\r\n \r\nknow how software works on Linux and how to install and use it  \r\n\r\n \r\nuse bash to execute\r\n commands in Linux and know your way around the file system\r\n\r\n \r\nhave an overview of Linux tools that are extremely useful for bioinformatics\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nSummary\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis training is intended for all Linux novices who\r\nwant to learn the basics of Linux without getting too much technical details.\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis hands-on training will show you how to\r\neffectively use Linux Ubuntu. Bioinformatics depends heavily on Linux-based computers and software. A lot of good scientific\r\nsoftware is written specifically for Linux. Additionally, Linux has most popular programming languages (e.g.Python, Perl, C) already installed and\r\nready to use! This\r\ntraining will teach you all you need to know to swiftly start using Linux, be it on the server of your department, or on your own computer (even if you\'re already running\r\nWindows or MacOS).\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nTentative schedule​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nPrior to the training session, you will receive a poll to ask you your personal goals by following this training sesion. Depending on the outcome, the schedule will be adjusted.\r\n \r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nDay 1\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nUNIX fundamentals and other Linux distributions\r\n\r\n \r\nInstall\r\n Linux distributions: test it harmlessly by running in live mode\r\n\r\n \r\nDifferent methods of\r\n installing software and where to get it\r\n\r\n \r\nThe UNIX file system \r\n\r\n \r\nLUNCH\r\n\r\n \r\nUsers on Linux and  access rights to view, create and execute\r\n\r\n \r\nGentle introduction\r\n to the command line in linux\r\n\r\n \r\n\n\r\n \r\nbasics\r\n of the command line\r\n\r\n \r\nbest tips enhancing\r\n your command line experience\r\n\r\n \r\nreading and writing\r\n contents in the command line\r\n\r\n \n\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nDay 2\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nBioinformatics in Linux\r\n\r\n \r\n\n\r\n \r\ninstalling useful\r\n bioinformatics and programming tools\r\n\r\n \r\nanalysing text\r\n output from bioinformatics tools\r\n\r\n \r\npassing outputs from\r\n and to different tools \r\n\r\n \r\nscripting\r\n in Linux\r\n\r\n \n\r\n\r\n \r\nLUNCH\r\n\r\n \r\nLinux\r\n in a network\r\n\r\n\r\nLinux playground: Open questions. Play around with your Linux to make it fit your (bioinformatics)\r\n needs. ​​​​​​​​​​​​​​​​​​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n​​\n\r\n​​​​​\n \r\n\r\n\n \r\n\r\n\n' 2018-11-05 09:30:00 UTC 2018-11-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Hands-On introduction to NGS variant analysis

    9 - 16 November 2018

    Leuven, Belgium

    Elixir node event
    Hands-On introduction to NGS variant analysis https://tess.elixir-europe.org/events/hands-on-introduction-to-ngs-variant-analysis b'Using a full publicly available chromosome read-set from one of the 1000 genome sample:\r\n\r\n\n This training gives an introduction to the use of several\r\npopular NGS analysis software packages under the GenePattern Graphical\r\ninterface.\r\n\n Skills required to follow this training include basic knowledge of Illumina NGS read structure. People who lack knowledge of Illumina reads should follow the \'Introduction to the analysis of NGS data\' training. Depending on the number of participants (max 20), it might be that you have to share the laptop with one other participant but you can also choose to bring your own laptop for this training session.​\n\r\n\n \n\nsimilar workflow(s) using unix operative system and the command-line\r\napproach.​\r\n​similar workflow(s) using commercial products like the \'CLC genomics workbench\'\r\nsimilar workflow(s) using the free Galaxy GUI (although perfectly doable using the acquired knowledge)\r\nvariant analysis at multi-genome level & GWAS (<- advanced computing and statistical expertise required).\r\nstructural variant analysis (large indels, translocations, CNV) as being too complex with no all-in-one tool available.\n\r\n\r\n​​​​​​​​​​​​​​​​​\n' 2018-11-09 09:30:00 UTC 2018-11-16 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Ghent

    14 November 2018

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent 2018-11-14 10:00:00 UTC 2018-11-14 12:00:00 UTC VIB Bioinformatics Core PC room V114 - 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 - 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Leuven

    15 November 2018

    Leuven, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Leuven https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-leuven This training is an introduction to the Electronic Laboratory Notebook (ELN) implemented at VIB. This training is intended for all new VIB researchers and will teach you the basic knowledge required to successfully document in ELN. The training consists of two parts: Introduction: Access​ ways to your notebook, ELN installation instructions and house rules, where to find documentation and get support Hands-on-demo: Creating notebooks/experiments, importing and exporting (MS Office) files, sharing data, using templates, advanced searching, printing, tips and tricks This training is mandatory for all new VIB co-workers and requires an active VIB account. In order to check your username and password, go to https://storefront.vib.be, if login fails send an e-mail to eln*Replace*With*At*Sign*vib.be. People who want to join this training can register here! 2018-11-15 13:00:00 UTC 2018-11-15 15:00:00 UTC VIB Bioinformatics Core O&N4 room 07.339 Campus Gasthuisberg, Leuven, Belgium O&N4 room 07.339 Campus Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Analyzing flow cytometry data using FlowJo

    19 November 2018

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data using FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-using-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data. \r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2018-11-19 09:30:00 UTC 2018-11-19 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Introductory statistics in GraphPad Prism

    18 December 2018

    Leuven, Belgium

    Elixir node event
    Introductory statistics in GraphPad Prism https://tess.elixir-europe.org/events/introductory-statistics-in-graphpad-prism b'In this hands-on session, you will apply the theory that you learnt in the Basic statistics theory training in Prism. The following topics will be covered:\nWhat is Prism? Where to find more information? How to install and use it?\r\nHow to use Prism to handle data: reading data\r\nHow to use Prism to create graphics\r\nHow to use basic statistical techniques in Prism: mean, variance, confidence intervals, correlations, hypothesis testing...\n\n\r\n\n  \r\n\n  \r\n\n' 2018-12-18 09:30:00 UTC 2018-12-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    11 January 2019

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data b'\nThis training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:\r\n- The Illumina platform\r\n- NGS data formats and file handling\r\n- Quality control of NGS data\r\n- Assembly and mapping of NGS data\r\n- Supporting IT: Galaxy and GenePattern platform\r\n\r\n\n This training is an introduction to \'Hands on introduction to ChIP-Seq analysis\', Hands-on introduction to NGS variant analysis\', \'GATK training\', and \'RNA-Seq analysis for differential expression in GenePattern\'. If you want to follow one of these trainings but you have no experience with NGS data you should follow this introduction. \n\r\n\r\n\n' 2019-01-11 09:30:00 UTC 2019-01-11 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • VIB Interest Group Meeting - containers and workflows

    25 January 2019

    Gent, Belgium

    Elixir node event
    VIB Interest Group Meeting - containers and workflows https://tess.elixir-europe.org/events/vib-interest-group-meeting-containers-and-workflows 2019-01-25 09:30:00 UTC 2019-01-25 16:30:00 UTC VIB Bioinformatics Core Clemenspoort - zaal Seelos, Gent, Belgium Clemenspoort - zaal Seelos Gent Belgium 9000 [] [] [] [] [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
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