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14 events found

Content provider: VIB Bioinformatics Core 

  • Image processing for correlated and multimodal imaging techniques

    19 October 2020 - 8 March 2022

    Elixir node event
    Image processing for correlated and multimodal imaging techniques https://tess.elixir-europe.org/events/image-processing-for-correlated-and-multimodal-imaging-techniques The purpose of this event is to dedicate three days of intense training to an audience with little or basic expertise. The program will first cover a full day of online lectures (19 October 2020), followed by two days of hands-on training (8 & 9 March 2021, Ghent). 2020-10-19 09:00:00 UTC 2022-03-08 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to the analysis of NGS data, online

    30 September - 14 October 2021

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, online https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-online-fe44ff0a-a9a4-4d39-b81b-2648bbb12681 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Mapping of NGS data - Supporting IT: Galaxy platform 2021-09-30 09:00:00 UTC 2021-10-14 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Elearning: Basic statistics theory

    1 - 31 October 2021

    Elixir node event
    Elearning: Basic statistics theory https://tess.elixir-europe.org/events/elearning-basic-statistics-theory After this training, you should be able to: Understand basic statistical concepts and methods for statistical analysis of life sciences data Choose the correct statistical test for analyzing your data Create the appropriate graph for visualizing your data Interpret and critically assess the results of basic statistical analyses Topics handled: Which statistical test should you choose? How to describe your data? How to visualize your data? The do's and don'ts of reporting statistics  Tips and tricks to improve the power of your tests  Examples   2021-10-01 09:00:00 UTC 2021-10-31 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Basic statistics in R, online

    4 - 25 October 2021

    Elixir node event
    Basic statistics in R, online https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent-3e7e335a-0b60-401a-94a2-94276fe61f26 This introduction to the use of the free statistical software language R is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics: bar charts, box, violin, scatter, PCA plots, heat maps and various other plots use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2021-10-04 09:00:00 UTC 2021-10-25 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Basic statistics in R, Leuven

    5 - 26 October 2021

    Elixir node event
    Basic statistics in R, Leuven https://tess.elixir-europe.org/events/basic-statistics-in-r-leuven-687bde82-456b-4676-92d3-0ccfae8c151f This introduction to the use of the free statistical software language R is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics: bar charts, box, violin, scatter, PCA plots, heat maps and various other plots use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2021-10-05 09:00:00 UTC 2021-10-26 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Functional Plant Bioinformatics (PLAZA)

    25 - 26 October 2021

    Zwijnaarde, Belgium

    Elixir node event
    Functional Plant Bioinformatics (PLAZA) https://tess.elixir-europe.org/events/functional-plant-bioinformatics-plaza-6cf34ba3-39b5-47da-b820-f337f736a3db Introduction plant comparative genomics (genes and gene families) + introduction PLAZA platform Functional characterization of plant genes (Gene families, GO, InterPro) Synteny analysis in polyploid cereals Gene set analysis for different plant -omics data sets: Functional interpretation of RNA-Seq and ChIP-Seq genes using the PLAZA Workbench Comparing gene sets between different di/polyploidy crop species 2021-10-25 09:00:00 UTC 2021-10-26 00:00:00 UTC VIB Bioinformatics Core UGent-VIB Research Building FSVM, Zwijnaarde, Belgium UGent-VIB Research Building FSVM Zwijnaarde Belgium 9052 [] [] [] [] [] []
  • A tour of machine learning: classification

    8 - 9 November 2021

    Gent, Belgium

    Elixir node event
    A tour of machine learning: classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification-ef0d581e-647b-4565-a0a8-cfc496bb61f4 At the end of the workshop you will be able to compute and evaluate prediction models from your data using the Scikit-Learn Python library. You will also be able to understand current advances in Machine Learning such as Deep Learning.  2021-11-08 09:00:00 UTC 2021-11-09 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []
  • Factorial design and analysis

    12 - 19 November 2021

    Elixir node event
    Factorial design and analysis https://tess.elixir-europe.org/events/factorial-design-and-analysis After attending this course, you will be able to reason about you experiment and come up with a design and analysis that fits your situations best, rather than to settle for a suboptimal textbook solution. 2021-11-12 09:00:00 UTC 2021-11-19 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to the analysis of NGS data, online

    18 - 25 November 2021

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, online https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-online-05f80e0e-ba8e-481e-92b6-ce0d07a27547 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Mapping of NGS data - Supporting IT: Galaxy platform 2021-11-18 09:00:00 UTC 2021-11-25 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Deep learning in biology

    22 - 23 November 2021

    Elixir node event
    Deep learning in biology https://tess.elixir-europe.org/events/deep-learning-in-biology Large amounts of data and compute resources have enabled the development of high-performance machine learning models. This is particularly due to deep learning techniques. By looking at many data samples, these models can find structure in the data that is useful for predictive and explorative analysis: e.g. classification, clustering, data generation, dimensionality reduction, etc. The most popular applications within biotechnology are concerned with image segmentation, diagnostics, sequence analysis, etc. However, deep learning models are far from straightforward to implement correctly due to the many different hyperparameter settings, optimization procedures, architecture choices, etc. In this course, we will make use of Jupyter Notebook and PyTorch, which are both based on Python, to apply deep learning techniques on both bio informatics and bio image informatics data. We aim to work towards applications that participants would like to study. 2021-11-22 09:00:00 UTC 2021-11-23 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Recombinant Protein Expression

    22 November 2021

    Elixir node event
    Recombinant Protein Expression https://tess.elixir-europe.org/events/recombinant-protein-expression The training will start with an introduction on the available recombinant protein expression systems, with their advantages and limitations, from which to choose for your favorite protein. Also, high-throughput protein expression, expression in plant cells, antibody and nanobody expression and a difficult-to-express protein case will be discussed. A next session will focus on strategy design to optimize protein purification and how to address quality assurance of the purified proteins. For clinical use of a protein-based biological stability and production yields are critical issues that come on top of the desired therapeutic efficacy. Why and how to deal with these critical aspects will be addressed as well during the training. Furthermore, also the key steps that are required for optimal protein formulation will be reviewed. We plan to end the day with a keynote talk from a pharma industry speaker illustrating the issues that need to be considered when engineering recombinant proteins for clinical applications. 2021-11-22 09:00:00 UTC 2021-11-22 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Initiation to Linux command line

    10 December 2021

    Ghent, Belgium

    Elixir node event
    Initiation to Linux command line https://tess.elixir-europe.org/events/initiation-to-linux-command-line-b5770ec7-60d2-48f5-9ce4-78647de489f8 After this training you will: feel comfortable using Linux command line use bash to execute commands in Linux and know your way around the file system 2021-12-10 09:00:00 UTC 2021-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Docker (and Singularity) for reproducible and automated data analysis

    10 - 11 January 2022

    Elixir node event
    Docker (and Singularity) for reproducible and automated data analysis https://tess.elixir-europe.org/events/docker-and-singularity-for-reproducible-and-automated-data-analysis Learn the concept of and the difference between Docker & Singularity containers  Write a Docker recipe, build and run a Docker image and containers Pull and push Docker container to / from Docker hub Docker files and layers; Docker cashing Working with volumes Pull Docker containers as a Singularity image 2022-01-10 09:00:00 UTC 2022-01-11 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Nextflow for reproducible and automated data analysis

    17 - 18 January 2022

    Elixir node event
    Nextflow for reproducible and automated data analysis https://tess.elixir-europe.org/events/nextflow-for-reproducible-and-automated-data-analysis Understand Nextflow's basic concepts: channels, processes, modules, workflows, etc.  Write and run a Nextflow pipeline  Write and modify config files for storing parameters related to computing hardware as well as pipeline dependent parameters 2022-01-17 09:00:00 UTC 2022-01-18 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []

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