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  • Software Carpentry workshop "R for Reproducible Scientific Analysis"

    6 - 7 June 2019

    Madrid, Spain

    Elixir node event
    Software Carpentry workshop "R for Reproducible Scientific Analysis" https://tess.elixir-europe.org/events/software-carpentry-workshop-r-for-reproducible-scientific-analysis Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2019-06-06 09:00:00 UTC 2019-06-07 17:00:00 UTC INB/ELIXIR-ES and CNIO Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro, Madrid, Spain Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro Madrid Madrid Spain 28029 Spanish National Cancer Research Centre (CNIO) EXCELERATEINB/ELIXIR-ESISCIII Graduate StudentsResearchers 20 workshops_and_courses registration_of_interest Software Carpentry R-programmingcontrol versionGitGitHubReproducibleResearchUnixShell scriptData visualizationData handling
  • 4th Disease Maps Community Meeting - DMCM2019

    2 - 4 October 2019

    Sevilla, Spain

    Elixir node event
    4th Disease Maps Community Meeting - DMCM2019 https://tess.elixir-europe.org/events/4th-disease-maps-community-meeting-dmcm2019 The [4th Disease Maps Community Meeting] (http://disease-maps.org/DMCM2019) is hosted by the [Clinical Bioinformatics Area] (http://www.clinbioinfosspa.es/), FPS, Hospital Virgen del Rocio. **Invited Talks** * _Schizophrenia Map: Data to knowledge to data_ **Jessica Dale Tenenbaum**, Duke University at Durham, North Carolina, USA * _Logic modeling to integrate disease maps and various omics data_ **Julio Saez-Rodriguez**, RWTH-Aachen University Hospital, Aachen, Germany * _Toward whole-cell computational models for precision medicine_ **Jonathan Karr**, Icahn School of Medicine at Mount Sinai, New York, USA * _Computational approaches to tackle chemoresistance in high-grade serous ovarian cancer_ **Sampsa Hautaniemi**, Faculty of Medicine, University of Helsinki, Finland **Afternoon discussion sessions** Afternoon breakout discussion sessions are planned following the example of the 2nd Disease Maps Community Meeting in Luxembourg. We invite proposals: a title and a brief description of the topic (1 page maximum). 4-6 topics will be selected, introduced 2nd October and discussed 3rd and 4th October with summaries presented at the end to all the participants. **Abstract subimission and registration** http://disease-maps.org/DMCM2019 2019-10-02 09:30:00 UTC 2019-10-04 13:30:00 UTC Disease Maps Project Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot, Sevilla, Spain Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot Sevilla Spain 41013 Systems medicine Translational medicine Bioinformatics Fundación Progreso y Salud (FPS)Hospital Virgen del Rocio disease-maps-coord@googlegroups.com [] [] meetings_and_conferences [] BioinformaticsClinical BioinformaticsDiseasesDisease mapsTranslational Bioinformaticssystems medicine
  • From reads to disease variants

    21 - 25 October 2019

    Granada, Spain

    Elixir node event
    From reads to disease variants https://tess.elixir-europe.org/events/from-reads-to-disease-variants Massive sequencing is becoming mainstream in many fields of biomedicine, including the clinical practice. However, the management of sequencing raw data to transform them into valuable biological information on variants and its further interpretation is still a complex task that requires of intensive computing and trained personnel. This course covers all the steps from the raw sequencing data, produced by the sequencers, to the obtention of lists of variants using the popular GATK software. The course is followed by a tutorial on the IVA, a powerful and intuitive web interface for the interactive prioritization and detection of disease variants. GATK workshops are designed to provide a comprehensive onboarding experience to new users, as well as access to more advanced understanding for users who are already familiar with the toolkit. 2019-10-21 09:15:00 UTC 2019-10-25 13:30:00 UTC Fundación Progreso y Salud (FPS), Broad Institute and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) Granada, Spain Granada Spain Fundación Progreso y Salud (FPS) [] mixed audienceGATK newbiesvariant discovery newbiesGATK expertsGATK users workshops_and_courses [] Variant callingVariant discoveryGATKdisease variantpriorizationgenomics
  • 4th European Conference on Translational Bioinformatics - ECTB2019

    11 - 12 November 2019

    Granada, Spain

    Elixir node event
    4th European Conference on Translational Bioinformatics - ECTB2019 https://tess.elixir-europe.org/events/4th-european-conference-on-translational-bioinformatics-ectb2019 We are pleased to present the 4th European Conference on Translational Bioinformatics: Biomedical Big Data Supporting Precision Medicine (#ECTB2019). The fourth ECTB edition follows the successful precedent of previous editions organized in 2016 at the University of Copenhagen, Denmark, in 2017 at the European Bioinformatics Institute, UK and in 2018 at the Barcelona Biomedical Research Park (PRBB). ECTB2019 will bring together researchers, clinicians, developers, and companies interested in exchanging experiences on the translation of research and innovative developments into healthcare tools and services based on genomics and bioinformatics applications. The conference is organised in collaboration with the University of Granada, Fundación Progreso y Salud (FPS) and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES). 2019-11-11 10:15:00 UTC 2019-11-12 16:00:00 UTC University of Granada, Fundación Progreso y Salud (FPS) and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) Facultad de Medicina de la Universidad de Granada, 11, Avenida de la Investigación, Granada, Spain Facultad de Medicina de la Universidad de Granada, 11, Avenida de la Investigación Granada Spain Biomedical science Genomics Bioinformatics Translational medicine University of Granada [] ResearchersCliniciansDevelopersCompanies meetings_and_conferences [] Translational researchTranslational Bioinformaticsbiomedical applicationsBig DataPrecision MedicineGenomicsBioinformaticsClinical BioinformaticstoolsservicesHealthcareApplications
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