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38 events found

Content provider: VIB Bioinformatics Core  or Software Carpentry 

  • Software Carpentry - Oklahoma State University

    10 January - 11 October 2019

    Software Carpentry - Oklahoma State University https://tess.elixir-europe.org/events/software-carpentry-oklahoma-state-university-2ac9f06a-b094-4ba6-bb3c-6adfbf65f8ba Find out more at https://osu-carpentry.github.io/2019-01-10-okstate/ 2019-01-10 09:00:00 UTC 2019-10-11 00:00:00 UTC Software Carpentry Oklahoma State University Oklahoma State University [] [] [] workshops_and_courses [] []
  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 1

    17 - 18 January 2019

    Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 1 https://tess.elixir-europe.org/events/software-carpentry-columbia-university-computing-fundamentals-with-python-section-1 Find out more at https://columbiaswc.github.io/2019-01-17-Columbia-Section-1/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Columbia University, Computing Fundamentals with Python - Section 1 Columbia University, Computing Fundamentals with Python - Section 1 [] [] [] workshops_and_courses [] []
  • Software Carpentry - Berkeley Institute for Data Science

    17 - 18 January 2019

    Software Carpentry - Berkeley Institute for Data Science https://tess.elixir-europe.org/events/software-carpentry-berkeley-institute-for-data-science-ac5fc78f-cec2-4b79-bab4-c5f8085026a9 Find out more at https://code.nimahejazi.org/2019-01-17-bids/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Berkeley Institute for Data Science Berkeley Institute for Data Science [] [] [] workshops_and_courses [] []
  • Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 2

    17 - 18 January 2019

    Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 2 https://tess.elixir-europe.org/events/software-carpentry-columbia-university-computing-fundamentals-with-python-section-2 Find out more at https://columbiaswc.github.io/2019-01-17-Columbia-Section-2/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Columbia University, Computing Fundamentals with Python - Section 2 Columbia University, Computing Fundamentals with Python - Section 2 [] [] [] workshops_and_courses [] []
  • Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 3

    17 - 18 January 2019

    Software Carpentry - Columbia University, Computing Fundamentals with Python - Section 3 https://tess.elixir-europe.org/events/software-carpentry-columbia-university-computing-fundamentals-with-python-section-3 Find out more at https://columbiaswc.github.io/2019-01-17-Columbia-Section-3/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Columbia University, Computing Fundamentals with Python - Section 3 Columbia University, Computing Fundamentals with Python - Section 3 [] [] [] workshops_and_courses [] []
  • Software Carpentry - Columbia University, Computing Fundamentals with R (Section 4)

    17 - 18 January 2019

    Software Carpentry - Columbia University, Computing Fundamentals with R (Section 4) https://tess.elixir-europe.org/events/software-carpentry-columbia-university-computing-fundamentals-with-r-section-4 Find out more at https://columbiaswc.github.io/2019-01-17-Columbia-Section-4/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Columbia University, Computing Fundamentals with R (Section 4) Columbia University, Computing Fundamentals with R (Section 4) [] [] [] workshops_and_courses [] []
  • Software Carpentry - Middlebury College

    17 - 18 January 2019

    Software Carpentry - Middlebury College https://tess.elixir-europe.org/events/software-carpentry-middlebury-college Find out more at https://rkclement.github.io/2019-01-17-middlebury/ 2019-01-17 09:00:00 UTC 2019-01-18 00:00:00 UTC Software Carpentry Middlebury College Middlebury College [] [] [] workshops_and_courses [] []
  • Software Carpentry - University of Chicago

    20 - 21 January 2019

    Software Carpentry - University of Chicago https://tess.elixir-europe.org/events/software-carpentry-university-of-chicago-cb6235d5-600c-48f7-9b70-20c5686f3976 Find out more at https://crerecombinase.github.io/2019-01-12-chicago/ 2019-01-20 09:00:00 UTC 2019-01-21 00:00:00 UTC Software Carpentry University of Chicago University of Chicago [] [] [] workshops_and_courses [] []
  • Software Carpentry - University of Massachusetts Boston

    22 - 23 January 2019

    Software Carpentry - University of Massachusetts Boston https://tess.elixir-europe.org/events/software-carpentry-university-of-massachusetts-boston Find out more at https://jebyrnes.github.io/2019-01-22-UMB/ 2019-01-22 09:00:00 UTC 2019-01-23 00:00:00 UTC Software Carpentry University of Massachusetts Boston University of Massachusetts Boston [] [] [] workshops_and_courses [] []
  • Software Carpentry - Earlham Institute

    22 - 23 January 2019

    Software Carpentry - Earlham Institute https://tess.elixir-europe.org/events/software-carpentry-earlham-institute-fe66ca05-8427-4b69-b0fd-9bd575354ece Find out more at https://tgac.github.io/2019-01-23-SWC/ 2019-01-22 09:00:00 UTC 2019-01-23 00:00:00 UTC Software Carpentry Earlham Institute Earlham Institute [] [] [] workshops_and_courses [] []
  • Software Carpentry - Stanford University

    23 - 24 January 2019

    Software Carpentry - Stanford University https://tess.elixir-europe.org/events/software-carpentry-stanford-university-070a351a-e397-4a17-93c4-c93fa5aaf666 Find out more at https://cengel.github.io/2019-01-23-stanford/ 2019-01-23 09:00:00 UTC 2019-01-24 00:00:00 UTC Software Carpentry Stanford University Stanford University [] [] [] workshops_and_courses [] []
  • VIB Interest Group Meeting - containers and workflows

    25 January 2019

    Gent, Belgium

    Elixir node event
    VIB Interest Group Meeting - containers and workflows https://tess.elixir-europe.org/events/vib-interest-group-meeting-containers-and-workflows 2019-01-25 09:30:00 UTC 2019-01-25 16:30:00 UTC VIB Bioinformatics Core Clemenspoort - zaal Seelos, Gent, Belgium Clemenspoort - zaal Seelos Gent Belgium 9000 [] [] [] [] [] []
  • Software Carpentry - New York Academy of Sciences

    26 - 27 January 2019

    Software Carpentry - New York Academy of Sciences https://tess.elixir-europe.org/events/software-carpentry-new-york-academy-of-sciences-f6277a8f-da2f-40aa-8ebe-e9356f8fe540 Find out more at https://matthewclark1223.github.io/2019-01-26-nyas-R/ 2019-01-26 09:00:00 UTC 2019-01-27 00:00:00 UTC Software Carpentry New York Academy of Sciences New York Academy of Sciences [] [] [] workshops_and_courses [] []
  • Software Carpentry - Swarthmore College

    26 - 27 January 2019

    Software Carpentry - Swarthmore College https://tess.elixir-europe.org/events/software-carpentry-swarthmore-college Find out more at https://timothylwarren.github.io/2019-01-26-swarthmore/ 2019-01-26 09:00:00 UTC 2019-01-27 00:00:00 UTC Software Carpentry Swarthmore College Swarthmore College [] [] [] workshops_and_courses [] []
  • Software Carpentry - Swansea University

    28 - 29 January 2019

    Software Carpentry - Swansea University https://tess.elixir-europe.org/events/software-carpentry-swansea-university-68269f67-c6a7-4fcd-8cdc-4f8ab14991b7 Find out more at https://sa2c.github.io/swc-swansea-january-2019/ 2019-01-28 09:00:00 UTC 2019-01-29 00:00:00 UTC Software Carpentry Swansea University Swansea University [] [] [] workshops_and_courses [] []
  • Software Carpentry - Somaliland

    28 - 29 January 2019

    Software Carpentry - Somaliland https://tess.elixir-europe.org/events/software-carpentry-somaliland Find out more at https://anelda.github.io/2019-01-28-SomaliREN/ 2019-01-28 09:00:00 UTC 2019-01-29 00:00:00 UTC Software Carpentry Somaliland Somaliland [] [] [] workshops_and_courses [] []
  • Software Carpentry - Walter Sisulu University

    31 January - 2 February 2019

    Software Carpentry - Walter Sisulu University https://tess.elixir-europe.org/events/software-carpentry-walter-sisulu-university Find out more at https://tenet-rccpii.github.io/2019-01-22-WSU-EastLondon/ 2019-01-31 09:00:00 UTC 2019-02-02 00:00:00 UTC Software Carpentry Walter Sisulu University Walter Sisulu University [] [] [] workshops_and_courses [] []
  • Software Carpentry - University of Illinois

    31 January 2019

    Software Carpentry - University of Illinois https://tess.elixir-europe.org/events/software-carpentry-university-of-illinois-03ca9162-0267-460d-b497-eff4c4693c17 Find out more at https://swc-uiuc.github.io/2019-01-31-dc-illinois/ 2019-01-31 09:00:00 UTC 2019-01-31 00:00:00 UTC Software Carpentry University of Illinois University of Illinois [] [] [] workshops_and_courses [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
  • Software Carpentry - University of Illinois

    7 - 8 February 2019

    Software Carpentry - University of Illinois https://tess.elixir-europe.org/events/software-carpentry-university-of-illinois-a9154607-1bf4-4f5a-abb0-1a9f40de07bd Find out more at https://swc-uiuc.github.io/2019-02-07-illinois/ 2019-02-07 09:00:00 UTC 2019-02-08 00:00:00 UTC Software Carpentry University of Illinois University of Illinois [] [] [] workshops_and_courses [] []
  • Software Carpentry - University of Zurich

    7 - 8 February 2019

    Software Carpentry - University of Zurich https://tess.elixir-europe.org/events/software-carpentry-university-of-zurich-a45d4c38-b022-4b41-86bc-ebd32969138a Find out more at https://uzhcrs.github.io/2019-02-07-zurich/ 2019-02-07 09:00:00 UTC 2019-02-08 00:00:00 UTC Software Carpentry University of Zurich University of Zurich [] [] [] workshops_and_courses [] []
  • Software Carpentry - Emory University

    9 - 10 February 2019

    Software Carpentry - Emory University https://tess.elixir-europe.org/events/software-carpentry-emory-university-27c8bb31-bc6b-4136-91f2-b867ac4c2aba Find out more at https://data-science-for-scientists-atl.github.io/2019-02-09-emory/ 2019-02-09 09:00:00 UTC 2019-02-10 00:00:00 UTC Software Carpentry Emory University Emory University [] [] [] workshops_and_courses [] []
  • Software Carpentry - National Research Council

    11 - 15 February 2019

    Software Carpentry - National Research Council https://tess.elixir-europe.org/events/software-carpentry-national-research-council Find out more at https://mchiapello.github.io/2019-02-11-Naples/ 2019-02-11 09:00:00 UTC 2019-02-15 00:00:00 UTC Software Carpentry National Research Council National Research Council [] [] [] workshops_and_courses [] []
  • RNA-Seq analysis for differential expression

    11 - 18 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-in-genepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n\n' 2019-02-11 09:30:00 UTC 2019-02-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • RNA-Seq analysis for differential expression, extra session

    12 - 25 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression, extra session https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-extra-session b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n​\n' 2019-02-12 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Software Carpentry - University Milano-Bicocca

    14 - 15 February 2019

    Software Carpentry - University Milano-Bicocca https://tess.elixir-europe.org/events/software-carpentry-university-milano-bicocca Find out more at https://anacost.github.io/2019-02-14-elixir-milano/ 2019-02-14 09:00:00 UTC 2019-02-15 00:00:00 UTC Software Carpentry University Milano-Bicocca University Milano-Bicocca [] [] [] workshops_and_courses [] []
  • Software Carpentry - University of Illinois

    14 - 15 February 2019

    Software Carpentry - University of Illinois https://tess.elixir-europe.org/events/software-carpentry-university-of-illinois-3ba3835d-8b89-4e59-9227-719c25b4682c Find out more at https://swc-uiuc.github.io/2019-02-14-illinois/ 2019-02-14 09:00:00 UTC 2019-02-15 00:00:00 UTC Software Carpentry University of Illinois University of Illinois [] [] [] workshops_and_courses [] []
  • Basic statistics theory

    22 February 2019

    Leuven, Belgium

    Elixir node event
    Basic statistics theory https://tess.elixir-europe.org/events/basic-statistics-theory b'After this basic statistics theory session, you should be able to:\r\nUnderstand basic statistical concepts and methods for statistical analysis of life sciences data\r\n\r\nChoose the correct statistical test for analyzing your data\n\r\n\n This training gives an introduction to the use of statistics for basic analyses of life sciences data. This training is a prerequisite introduction to a series of \r\nhands-on trainings on the statistical analysis of life sciences data: \r\n\'Basic statistics in R\' and \'Basic statistics in Graphpad Prism\'.\r\n If you want to follow one of these trainings, you have to follow this \r\nintroduction. Ít will give you all the theoretical background that you need. Those that already have a strong statistical background may register directly for the \'Basic statistics in R, part II\' training. \n\r\n\r\n\r\n\n No skills required. \n\r\n\n  9h30-12h30: Theoretical background\r\n\n' 2019-02-22 09:30:00 UTC 2019-02-22 16:30:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analyzing flow cytometry data in FlowJo

    25 February 2019

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data in FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-in-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2019-02-25 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
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