Register event
16 events found

Content provider: VIB Bioinformatics Core  or Sheffield Bioinformatics Core 

  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • VIB Interest Group Meeting - containers and workflows

    25 January 2019

    Gent, Belgium

    Elixir node event
    VIB Interest Group Meeting - containers and workflows https://tess.elixir-europe.org/events/vib-interest-group-meeting-containers-and-workflows 2019-01-25 09:30:00 UTC 2019-01-25 16:30:00 UTC VIB Bioinformatics Core Clemenspoort - zaal Seelos, Gent, Belgium Clemenspoort - zaal Seelos Gent Belgium 9000 [] [] [] [] [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
  • Introduction to R

    7 February 2019

    Sheffield, United Kingdom

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-1a71189d-660b-4509-b4b3-c3298dcefd0e R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2019-02-07 09:30:00 UTC 2019-02-07 17:00:00 UTC The Diamond - Workroom 2, Sheffield, United Kingdom The Diamond - Workroom 2 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • RNA-Seq analysis for differential expression

    11 - 18 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-in-genepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n\n' 2019-02-11 09:30:00 UTC 2019-02-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • RNA-Seq analysis for differential expression, extra session

    12 - 25 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression, extra session https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-extra-session b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n​\n' 2019-02-12 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Basic statistics theory

    22 February 2019

    Leuven, Belgium

    Elixir node event
    Basic statistics theory https://tess.elixir-europe.org/events/basic-statistics-theory b'After this basic statistics theory session, you should be able to:\r\nUnderstand basic statistical concepts and methods for statistical analysis of life sciences data\r\n\r\nChoose the correct statistical test for analyzing your data\n\r\n\n This training gives an introduction to the use of statistics for basic analyses of life sciences data. This training is a prerequisite introduction to a series of \r\nhands-on trainings on the statistical analysis of life sciences data: \r\n\'Basic statistics in R\' and \'Basic statistics in Graphpad Prism\'.\r\n If you want to follow one of these trainings, you have to follow this \r\nintroduction. Ít will give you all the theoretical background that you need. Those that already have a strong statistical background may register directly for the \'Basic statistics in R, part II\' training. \n\r\n\r\n\r\n\n No skills required. \n\r\n\n  9h30-12h30: Theoretical background\r\n\n' 2019-02-22 09:30:00 UTC 2019-02-22 16:30:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analyzing flow cytometry data in FlowJo

    25 February 2019

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data in FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-in-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2019-02-25 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Advanced FlowJo training

    26 February 2019

    Gent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Advanced FlowJo training https://tess.elixir-europe.org/events/advanced-flowjo-training b'\nParticipants must have experience with FlowJo. If you\'re new to the software you can attend our FlowJo introduction training​ first. ​\r\n\n \r\n\r\n\n' 2019-02-26 09:30:00 UTC 2019-02-26 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Ghent Expo, Gent (Sint-Denijs-Westrem), Belgium Holiday Inn Ghent Expo Gent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Introduction to RNA-seq

    4 March 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq https://tess.elixir-europe.org/events/introduction-to-rna-seq-15076391-e5f2-4c5c-8ea3-5b925a66b8a3 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-03-04 09:30:00 UTC 2019-03-04 17:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Basic statistics in R

    11 - 18 March 2019

    GENT, Belgium

    Elixir node event
    Basic statistics in R https://tess.elixir-europe.org/events/basic-statistics-in-r b'\n\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This\r\n training is an introduction to the use of R and RStudio and stops at very basic \r\nanalyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, \r\nANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theory training. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry training, the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-03-11 09:30:00 UTC 2019-03-18 17:00:00 UTC VIB Bioinformatics Core Clemenspoort, GENT, Belgium Clemenspoort GENT Belgium 9000 [] [] [] [] [] []
  • Introduction to RNA-seq

    11 April 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq https://tess.elixir-europe.org/events/introduction-to-rna-seq-03705bbf-08b1-4e5d-b3ff-d48069b094b4 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-04-11 08:30:00 UTC 2019-04-11 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Using MOFA for integration of omics data

    3 May 2019

    Leuven, Belgium

    Elixir node event
    Using MOFA for integration of omics data https://tess.elixir-europe.org/events/using-mofa-for-integration-of-omics-data 2019-05-03 09:30:00 UTC 2019-05-03 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to identifying and characterising somatic variants

    10 May 2019

    Sheffield, United Kingdom

    Introduction to identifying and characterising somatic variants https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-somatic-variants This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-10 08:30:00 UTC 2019-05-10 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to identifying and characterising variants from NGS data

    30 - 31 May 2019

    Sheffield, United Kingdom

    Introduction to identifying and characterising variants from NGS data https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data-bfeba574-0bba-47f5-9de9-fdabc6d50ce4 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-30 08:30:00 UTC 2019-05-31 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to RNA-seq analysis in R

    24 June 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-4ff2ae93-b96a-4dc0-8f92-957042a88c1d In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2019-06-24 08:30:00 UTC 2019-06-24 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
Note, this map only displays events that have geolocation information in TeSS.
For the complete list of events in TeSS, click the grid tab.