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66 events found

Content provider: VIB Bioinformatics Core  or European Bioinformatics Ins... 

  • Executive Masters in Management of Research Infrastructures

    20 September 2017 - 15 March 2019

    Milan, Italy

    Elixir node event
    Executive Masters in Management of Research Infrastructures https://tess.elixir-europe.org/events/executive-masters-in-management-of-research-infrastructures This Masters development programme is aimed at current Research Infrastructures managers and leaders who wish to develop the competencies required to meet the needs of Research Infrastructures in the planning, construction and operation phases. 2017-09-20 12:00:00 UTC 2019-03-15 12:00:00 UTC University of Milano-Bicocca, Milan, Italy University of Milano-Bicocca Milan Italy 20126 [] Claire Johnson [] [] [] [] []
  • Executive Masters in Management of Research Infrastructures

    13 November 2018 - 26 June 2020

    Milan, Italy

    Elixir node event
    Executive Masters in Management of Research Infrastructures https://tess.elixir-europe.org/events/executive-masters-in-management-of-research-infrastructures-12abb26e-f3b7-45ac-92c6-24008017292d This Masters development programme is aimed at current Research Infrastructures managers and leaders who wish to develop the competencies required to meet the needs of Research Infrastructures in the planning, construction and operation phases. 2018-11-13 12:00:00 UTC 2020-06-26 12:00:00 UTC University of Milano-Bicocca, Milan, Italy University of Milano-Bicocca Milan Italy 20126 [] Claire Johnson [] [] [] [] []
  • EMBL-EBI Training Webinar Series

    29 November 2018 - 31 January 2019

    Elixir node event
    EMBL-EBI Training Webinar Series https://tess.elixir-europe.org/events/embl-ebi-training-webinar-series The EMBL-EBI Training webinar series is taking a short break and will return in February with new webinars. Details of upcoming webinars will be posted here soon. 2018-11-29 15:15:00 UTC 2019-01-31 15:15:00 UTC [] Melissa Burke [] [] [] [] []
  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Bioinformatics for Discovery

    22 - 23 January 2019

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Discovery https://tess.elixir-europe.org/events/bioinformatics-for-discovery-d559ad52-4eda-438d-95b9-40e4bfcf0b59 A Master’s level short course aimed at providing discovery scientists from a range of fields (e.g. agri-food, pharma and consumer goods) with the skills and knowledge required to apply bioinformatics techniques in their everyday work. 2019-01-22 10:00:00 UTC 2019-01-23 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 2 Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] []
  • VIB Interest Group Meeting - containers and workflows

    25 January 2019

    Gent, Belgium

    Elixir node event
    VIB Interest Group Meeting - containers and workflows https://tess.elixir-europe.org/events/vib-interest-group-meeting-containers-and-workflows 2019-01-25 09:30:00 UTC 2019-01-25 16:30:00 UTC VIB Bioinformatics Core Clemenspoort - zaal Seelos, Gent, Belgium Clemenspoort - zaal Seelos Gent Belgium 9000 [] [] [] [] [] []
  • Ensembl Browser Workshop, DKFZ Heidelberg, 29 January 2019

    29 January 2019

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ Heidelberg, 29 January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-heidelberg-29-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-29 09:00:00 UTC 2019-01-29 17:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] []
  • Ensembl Browser workshop, University of Nottingham, 29th January 2019

    29 January 2019

    Nottingham, United Kingdom

    Elixir node event
    Ensembl Browser workshop, University of Nottingham, 29th January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-university-of-nottingham-29th-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-29 09:00:00 UTC 2019-01-29 17:00:00 UTC University of Nottingham, Nottingham, United Kingdom University of Nottingham Nottingham United Kingdom NG7 2RD [] Benjamin Moore [] [] [] [] []
  • Ensembl Browser Workshop, DKFZ Heidelberg, 30 January 2019

    30 January 2019

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ Heidelberg, 30 January 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-heidelberg-30-january-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-01-30 09:00:00 UTC 2019-01-30 17:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] []
  • Ensembl browser and REST API course, Yeditepe University

    31 January - 1 February 2019

    Atasehir, Turkey

    Elixir node event
    Ensembl browser and REST API course, Yeditepe University https://tess.elixir-europe.org/events/ensembl-browser-and-rest-api-course-yeditepe-university Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. Then learn to flexibly access these data using the Ensembl REST APIs in Python, Perl or R. 2019-01-31 09:00:00 UTC 2019-02-01 17:00:00 UTC Yeditepe University, Atasehir, Turkey Yeditepe University Atasehir Turkey 34755 [] Emily Perry [] [] [] [] []
  • Metabolomics Bioinformatics for Life Scientists

    4 - 8 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Metabolomics Bioinformatics for Life Scientists https://tess.elixir-europe.org/events/metabolomics-bioinformatics-for-life-scientists This course will provide an overview of key issues that effect metabolomics studies, handling datasets and procedures for the analysis of metabolomics data using bioinformatics tools. 2019-02-04 09:00:00 UTC 2019-02-08 16:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] [] [] []
  • Ensembl browser and REST API course, Gebze Tech University

    4 - 6 February 2019

    Gebze, Turkey

    Elixir node event
    Ensembl browser and REST API course, Gebze Tech University https://tess.elixir-europe.org/events/ensembl-browser-and-rest-api-course-gebze-tech-university Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. Then learn to flexibly access these data using the Ensembl REST APIs in Python, Perl or R. 2019-02-04 09:00:00 UTC 2019-02-06 17:00:00 UTC Gebze Technical University, Gebze, Turkey Gebze Technical University Gebze Turkey 41400 [] Emily Perry [] [] [] [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
  • Introduction to Metabolomics Analysis

    5 - 8 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Metabolomics Analysis https://tess.elixir-europe.org/events/introduction-to-metabolomics-analysis-9028d371-6ae8-4d8a-b878-7f03bc98132e This course will provide an introduction to metabolomics data analysis using publically available software and tools. 2019-02-05 09:00:00 UTC 2019-02-08 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] [] [] []
  • Introduction to EMBL-EBI Resources

    6 February 2019

    Elixir node event
    Introduction to EMBL-EBI Resources https://tess.elixir-europe.org/events/introduction-to-embl-ebi-resources-669d05d1-6f11-4b32-bc0c-e74a6e3f82cf The EMBL-EBI is the home of the world's most comprehensive range of freely available molecular databases and resources. Our resources help researchers share and analyse data and perform complex queries in many different ways. Join us for a tour of the core data resources at EMBL-EBI. 2019-02-06 15:30:00 UTC 2019-02-06 15:30:00 UTC [] Melissa Burke [] [] [] [] []
  • Ensembl Browser Workshop, Cartagena, 7 February 2018

    7 February 2019

    Cartagena, Colombia

    Elixir node event
    Ensembl Browser Workshop, Cartagena, 7 February 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-cartagena-7-february-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-02-07 09:00:00 UTC 2019-02-07 17:00:00 UTC Universidad de Cartagena, Cartagena, Colombia Universidad de Cartagena Cartagena Colombia 130001 [] Astrid Gall [] [] [] [] []
  • Ensembl Browser Workshop, Cartagena, 7 February 2019

    7 February 2019

    Cartagena, Colombia

    Elixir node event
    Ensembl Browser Workshop, Cartagena, 7 February 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-cartagena-7-february-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-02-07 09:00:00 UTC 2019-02-07 17:00:00 UTC Universidad de Cartagena, Cartagena, Colombia Universidad de Cartagena Cartagena Colombia 130001 [] Astrid Gall [] [] [] [] []
  • Ensembl REST API Workshop, Cartagena, 8 February 2018

    8 February 2019

    Cartagena, Colombia

    Elixir node event
    Ensembl REST API Workshop, Cartagena, 8 February 2018 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-cartagena-8-february-2018 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-08 09:00:00 UTC 2019-02-08 15:00:00 UTC Universidad de Cartagena, Cartagena, Colombia Universidad de Cartagena Cartagena Colombia 130001 [] Astrid Gall [] [] [] [] []
  • Ensembl REST API Workshop, Cartagena, 8 February 2019

    8 February 2019

    Cartagena, Colombia

    Elixir node event
    Ensembl REST API Workshop, Cartagena, 8 February 2019 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-cartagena-8-february-2019 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-08 09:00:00 UTC 2019-02-08 15:00:00 UTC Universidad de Cartagena, Cartagena, Colombia Universidad de Cartagena Cartagena Colombia 130001 [] Astrid Gall [] [] [] [] []
  • Ensembl Browser Workshop, Bogota, 11 February 2019

    11 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-02-11 09:00:00 UTC 2019-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • RNA-Seq analysis for differential expression

    11 - 18 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-in-genepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n\n' 2019-02-11 09:30:00 UTC 2019-02-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Ensembl REST API Workshop, Bogota, 12 February 2018

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2018 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2018 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • Ensembl REST API Workshop, Bogota, 12 February 2019

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2019 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2019 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • RNA-Seq analysis for differential expression, extra session

    12 - 25 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression, extra session https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-extra-session b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n​\n' 2019-02-12 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to Multiomics Data Integration

    12 - 15 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Multiomics Data Integration https://tess.elixir-europe.org/events/introduction-to-multiomics-data-integration-2dfe9630-89e9-4fe5-9b8e-0558e90eac74 This course will provide participants with biological examples of data integration, and the challenges that researchers face. The course will focus on the use of public data resources and open access tools for enabling integrated working, with an emphasis on data visualisation. 2019-02-12 10:00:00 UTC 2019-02-15 16:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 2 Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] [] [] [] []
  • EMBL-EBI Workshop: Resources and tools for genomics, protein interactions and structural applications

    20 - 21 February 2019

    Pavia, Italy

    Elixir node event
    EMBL-EBI Workshop: Resources and tools for genomics, protein interactions and structural applications https://tess.elixir-europe.org/events/embl-ebi-workshop-resources-and-tools-for-genomics-protein-interactions-and-structural-applications In this course participants will explore EMBL-EBI resources for genomics, protein interaction and structural biological applications. The sessions focus on browsing, searching and retrieving genomic data, protein interaction information and three-dimensional structures. 2019-02-20 08:30:00 UTC 2019-02-21 17:30:00 UTC Università di Pavia, Pavia, Italy Università di Pavia Pavia Italy 27100 [] Johanna Langrish [] [] [] [] []
  • Basic statistics theory

    22 February 2019

    Leuven, Belgium

    Elixir node event
    Basic statistics theory https://tess.elixir-europe.org/events/basic-statistics-theory b'After this basic statistics theory session, you should be able to:\r\nUnderstand basic statistical concepts and methods for statistical analysis of life sciences data\r\n\r\nChoose the correct statistical test for analyzing your data\n\r\n\n This training gives an introduction to the use of statistics for basic analyses of life sciences data. This training is a prerequisite introduction to a series of \r\nhands-on trainings on the statistical analysis of life sciences data: \r\n\'Basic statistics in R\' and \'Basic statistics in Graphpad Prism\'.\r\n If you want to follow one of these trainings, you have to follow this \r\nintroduction. Ít will give you all the theoretical background that you need. Those that already have a strong statistical background may register directly for the \'Basic statistics in R, part II\' training. \n\r\n\r\n\r\n\n No skills required. \n\r\n\n  9h30-12h30: Theoretical background\r\n\n' 2019-02-22 09:30:00 UTC 2019-02-22 16:30:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analyzing flow cytometry data in FlowJo

    25 February 2019

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data in FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-in-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2019-02-25 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Bioinformatics Resources for Protein Biology

    26 - 28 February 2019

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics Resources for Protein Biology https://tess.elixir-europe.org/events/bioinformatics-resources-for-protein-biology-ec67c4eb-5298-41b3-82d1-2bc034c0d4ef This three day workshop will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. 2019-02-26 09:00:00 UTC 2019-02-28 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] []
  • Advanced FlowJo training

    26 February 2019

    Gent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Advanced FlowJo training https://tess.elixir-europe.org/events/advanced-flowjo-training b'\nParticipants must have experience with FlowJo. If you\'re new to the software you can attend our FlowJo introduction training​ first. ​\r\n\n \r\n\r\n\n' 2019-02-26 09:30:00 UTC 2019-02-26 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Ghent Expo, Gent (Sint-Denijs-Westrem), Belgium Holiday Inn Ghent Expo Gent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
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