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105 events found

Event types: Workshops and courses 

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Content provider: VIB Bioinformatics Core  or CSC - IT Center for Science  or Data Carpentry 

  • Bioweek: Using Modern HPC Environment Efficiently

    No date given

    Elixir node event
    Bioweek: Using Modern HPC Environment Efficiently https://tess.elixir-europe.org/events/bioweek-using-modern-hpc-environment-efficiently Using a modern HPC environment efficiently requires not only a good understanding of your scientific problem, but also some familiarity with the technical aspects of the system. On this course we will take a look at some of the most essential ones: Using modern storage services, running jobs through a batch job system and some solutions for getting your analysis environment running on a HPC platform. [] [] [] workshops_and_courses [] []
  • CANCELED: Linux 1 - Introduction to Linux

    23 - 24 January 2017

    Elixir node event
    CANCELED: Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-01-23 09:30:00 UTC 2017-01-24 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Metagenomics Data Analysis Workshop @ CSC

    3 - 6 April 2017

    Espoo, Finland

    Elixir node event
    Metagenomics Data Analysis Workshop @ CSC https://tess.elixir-europe.org/events/metagenomics-data-analysis-workshop-csc Description Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis methods and advanced computing approaches. This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced. The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody. META-pipe has been developed by ELIXIR-Norway, and it offers tools for pre-processing (Prinseq, FastQC), assembly (MetaRay/Ray, Mira), taxonomic classification (LC-classifier), gene prediction (Glimmer/MGA), functional analysis (Blast, Priam, InterProScan) and visualization (Metarep). META-pipe analysis jobs use a Spark cluster in the cloud for computation. Chipster offers over 360 analysis tools for different kinds of high-thoughput data. For community analysis of amplicon sequencing data it has tools for pre-processing (Prinseq, Trimmomatic, FastQC, Mothur), taxonomic classification (Mothur), and statistical analysis for marker gene studies (R packages vegan, rich, biodiversityR, pegas and labdsv).  The workshop is organized in collaboration with the ELIXIR EXCELERATE project. Lecturers Nils Willassen (ELIXIR-Norway) Espen Robertsen (ELIXIR-Norway) Erik Hjerde (ELIXIR-Norway) Aleksandr Agafonov (ELIXIR-Norway) Anu Mikkonen (University of Jyväskylä) Jenni Hultman (University of Helsinki) Petri Auvinen (University of Helsinki) Jarno Tuimala (RS training) Maria Lehtivaara (CSC) Kimmo Mattila (CSC) Eija Korpelainen (CSC) Program Please note that there might be still small changes to the schedule. Day 1, Monday 3.4.2017: OPTIONAL MODULE - Community analysis of amplicon sequencing data 9:00-10:45 LECTURES Who's there? Community analysis by amplicon sequencing (Anu Mikkonen) Short demo: Using QIIME in parallel fashion in HPC environments (Kimmo Mattila) 10:45-11:00 Coffee break 11:00-12:30 HANDS-ON SESSION: Using the Chipster software to analyze 16S rRNA data (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen) Introduction to Chipster Data preprocessing with Mothur-based tools and FastQC 12:30-13:30 Lunch 13:30-16:30 HANDS-ON SESSION: Using Chipster continues (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen and Jarno Tuimala) // coffee break included Data preprocessing with Mothur-based tools Taxonomic classification with Mothur-based tools Statistical analysis of marker gene data: Comparing diversity and abundance between groups Visualization Day 2, Tuesday 4.4.2017: Sample preparation, sequencing, quality control, filtering and assembly 9:00-12:30 LECTURES 9:00-10:15 Selecting and preparing samples for metaomics (Anu Mikkonen) Your samples are only as good as your sample preparation routines are, and your results are only as valid as your experimental design is. This talk will discuss, showing plenty of real-life examples, all the things that can go wrong before you even send your DNA samples out for the sequencing. The talk includes lots of practical recommendations on what to do before, or sometimes instead of, metagenomics analysis. 10:15-10:45 Sequencing technologies for metagenomics (Petri Auvinen) 10:45-11:00 Coffee break 11:00-11:30 Metagenomics analysis – an overview (Nils Willassen) 11:30-12:00 META-pipe analysis platform overview (Espen Robertsen, Erik Hjerde) 12:00-12:30 Metagenomics in the cloud (Aleksandr Agafonov) 12:30-13:15 Lunch 13:15-16:30 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Quality control and filtering Assembly Validation Day 3, Wednesday 5.4.2017: Taxonomic and functional analysis 9:00-11:30 LECTURES 9:00-9:30 Taxonomic classification (Nils Willassen) 9:30-10:00 Functional assignment (Espen Robertsen) 10:00-10:15 Coffee break 10:15-10:45 New data resources for marine metagenomics (Nils Willassen) 10:45-11:15 The metagenomics data life-cycle: standards and best practice (TBD) 11:15-12:00 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) Introduction, taxonomic classification 12:00-13:00 Lunch 13:00-16:30 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Taxonomic classification continued Functional assignment Day 4, Thursday 6.4.2017: Comparative metagenomics and other analysis 9:00-12:00 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Visualization of data Comparative metagenomics 12:00-13:00 Lunch 13:00-14:30 LECTURES AND WRAP-UP 13:00-13:35 Arctic metagenomes as a scaffold for understanding metatranscriptomic data (Jenni Hultman) 13:35-14:00 Genome assembly from metagenomic reads (Jenni Hultman) 14:00-14:30 Feedback and wrap up   Language:  EnglishPrice:          Free of charge https://events.prace-ri.eu/event/602/ 2017-04-03 06:00:00 UTC 2017-04-06 14:00:00 UTC ELIXIR EXCELERATE project and PRACE CSC Finland Oy, Espoo, Finland CSC Finland Oy Espoo Finland Metagenomics CSC [] Anyone workshops_and_courses registration_of_interest EXCELERATEMarine Metagenomics
  • Metagenomics data analysis

    3 - 6 April 2017

    Elixir node event
    Metagenomics data analysis https://tess.elixir-europe.org/events/metagenomics-data-analysis This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. It has also an optional module on community analysis of amplicon sequencing data. 2017-04-03 09:00:00 UTC 2017-04-06 17:00:00 UTC The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. [] [] [] workshops_and_courses [] []
  • Advanced Optimization and Threading

    26 - 28 April 2017

    Elixir node event
    Advanced Optimization and Threading https://tess.elixir-europe.org/events/advanced-optimization-and-threading This course will give you the tools and skills needed for writing high performing code for scientific computing. It focuses on techniques that enable you to extract maximum performance from a single node in a modern supercomputer or cluster, which provides the foundation for good performance even for codes running on multiple nodes. 2017-04-26 09:00:00 UTC 2017-04-28 16:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Linux 1 - Introduction to Linux

    15 - 16 May 2017

    Elixir node event
    Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux-20a2b0b6-7ec2-489a-b317-6dd9dbf6131b This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-05-15 09:30:00 UTC 2017-05-16 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • CSC Summer School in High-Performance Computing 2017

    27 June - 5 July 2017

    Elixir node event
    CSC Summer School in High-Performance Computing 2017 https://tess.elixir-europe.org/events/csc-summer-school-in-high-performance-computing-2017 The 8th CSC Summer School brings together undergraduate and graduate students and postdoctoral researchers in different disciplines of scientific computing. The contents consist of lectures and hands-on training on parallel programming, code optimization and other necessary skills in development of scientific software. 2017-06-27 09:00:00 UTC 2017-07-05 17:00:00 UTC Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. [] [] [] workshops_and_courses [] []
  • Protein–lipid interactions: Advanced experimental and computational tools

    2 - 9 July 2017

    Elixir node event
    Protein–lipid interactions: Advanced experimental and computational tools https://tess.elixir-europe.org/events/protein-lipid-interactions-advanced-experimental-and-computational-tools This EMBO practical course will bridge cutting edge experimental and computational tools to study lipid-protein interactions. Advanced PhD students and Postdocs will receive ample opportunities to learn about the increasing importance and benefits of interdisciplinary research in this developing area. Followed by one day of lectures by top scientists in the field, the practical part will be structured into 5 modules, where participants will be able to learn latest wet lab techniques combined with advanced molecular dynamics simulations in small groups. 2017-07-02 18:00:00 UTC 2017-07-09 12:00:00 UTC See the EMBO event page for details. See the EMBO event page for details. [] [] [] workshops_and_courses [] []
  • Biomolecular data mining: a hands-on training

    11 - 13 September 2017

    Antwerpen, Belgium

    Elixir node event
    Biomolecular data mining: a hands-on training https://tess.elixir-europe.org/events/biomolecular-data-mining-a-hands-on-training This course aims to introduce the core principles and biomedical applications of different data mining and machine learning techniques in a hands-on manner. It will tackle both unsupervised (clustering, frequent pattern mining, data projection) and supervised (classification) techniques. The methods that will be seen include hierarchical clustering, k- means clustering, item set mining, association rule mining, principle component analysis, support vector machines, random forests, bayesian networks and artificial neural networks. Attendees will be introduced to the basic operations of these data mining techniques, with a focus on the practical use and interpretation of these procedures rather than the mathematical formulas. In addition, attendants will be introduced to some important data processing and performance evaluation methods related to these data mining techniques. The software used in this course will be R. The course itself will consist of 50% theory lessons, 40% hands-on practicals and 10% application case studies. Organised by biomina: Dr. Pieter Meysman Prof. dr. Kris Laukens 2017-09-11 09:00:00 UTC 2017-09-13 17:00:00 UTC biomina Antwerpen Groenenborgerlaan, Antwerpen, Belgium Antwerpen Groenenborgerlaan Antwerpen Antwerpen Belgium 2020 Biomedical science Machine learning Data mining University of Antwerp Dr. Pieter Meysman Prof. dr. Kris Laukens ELIXIR Belgium and Flemish Region PhD studentsPostDocs 30 workshops_and_courses registration_of_interest []
  • Variant analysis with GATK

    13 - 15 September 2017

    Elixir node event
    Variant analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-3034974f-dd45-41d0-ac44-3cd647115520 This workshop will focus on the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the "Best Practices" developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. 2017-09-13 09:00:00 UTC 2017-09-15 17:00:00 UTC The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq data analysis

    28 - 29 September 2017

    Elixir node event
    Single cell RNA-seq data analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis This hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools. It consists of two alternative days, please select based on your computational background EITHER 1) 28.9 Single cell RNA-seq data analysis with R (previous experience with R required), OR 2) 29.9 Single cell RNA-seq data analysis with Chipster (suitable for everybody) 2017-09-28 09:00:00 UTC 2017-09-29 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Introduction to Biopython

    27 - 28 November 2017

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython-dadfcc53-9c9c-434d-95f5-90d20fad3fae This course provides a short introduction to python programming and Biopython tool library 2017-11-27 09:00:00 UTC 2017-11-28 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Introduction to base R

    5 February 2018

    Elixir node event
    Bioweek: Introduction to base R https://tess.elixir-europe.org/events/bioweek-introduction-to-base-r This course is aimed at people who wish to start learning R programming from scratch. No previous experience with R or other programming languages is expected. 2018-02-05 09:00:00 UTC 2018-02-05 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Data visualisation using RStudio and ggplot

    6 February 2018

    Elixir node event
    Bioweek: Data visualisation using RStudio and ggplot https://tess.elixir-europe.org/events/bioweek-data-visualisation-using-rstudio-and-ggplot In this course you will learn how to clean up, manipulate and visualise your data using the efficient workflows available in RStudio and the tidyverse packages. These central data science skills are usually also called data wrangling and exploratory data analysis. 2018-02-06 09:00:00 UTC 2018-02-06 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Computing intensive bioinformatics analysis on Taito

    7 February 2018

    Elixir node event
    Bioweek: Computing intensive bioinformatics analysis on Taito https://tess.elixir-europe.org/events/bioweek-computing-intensive-bioinformatics-analysis-on-taito The Taito supercluster environment provides a good platform for running computing intensive bioinformatics analysis. However, to be able to utilize Taito effectively, you must understand how the batch job system works in Taito. 2018-02-07 09:00:00 UTC 2018-02-07 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Using cPouta cloud in bioinformatics

    8 February 2018

    Elixir node event
    Bioweek: Using cPouta cloud in bioinformatics https://tess.elixir-europe.org/events/bioweek-using-cpouta-cloud-in-bioinformatics This course day provides an introduction to the basic features of the cPouta cloud and demonstrates how a virtual bioinformatics server is set up in cPouta. 2018-02-08 09:00:00 UTC 2018-02-08 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Single cell RNA-seq data analysis using Chipster

    9 February 2018

    Elixir node event
    Bioweek: Single cell RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/bioweek-single-cell-rna-seq-data-analysis-using-chipster This one day hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools using the free and user-friendly Chipster software. No previous knowledge of Unix or R is required! 2018-02-09 09:00:00 UTC 2018-02-09 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Advanced Threading and Optimization

    4 - 6 April 2018

    Elixir node event
    Advanced Threading and Optimization https://tess.elixir-europe.org/events/advanced-threading-and-optimization-5d04bccf-1e7f-4b18-9a92-ce0ffeedeebd The course includes topics on code optimization for x86 platforms and efficient code parallelisation using OpenMP threading. Advanced aspects of threading and optimization, such as new features in OpenMP 4.5, will be covered during the course. Some performance aspects of hybrid MPI+OpenMP programs will also be discussed. 2018-04-04 09:00:00 UTC 2018-04-06 16:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq data analysis using Chipster

    19 September 2018

    Elixir node event
    Single cell RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis-using-chipster This introductory course covers single cell RNA-seq data analysis methods, tools and file formats. The free and user-friendly Chipster software is used in the exercises, and the course is thus suitable for everybody. 2018-09-19 09:00:00 UTC 2018-09-19 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq data analysis using R and command line tools

    21 September 2018

    Elixir node event
    Single cell RNA-seq data analysis using R and command line tools https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis-fd222f3c-408e-4a9e-806d-fa375faae03c This hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools. Basic skills of R and Unix are required. 2018-09-21 09:00:00 UTC 2018-09-21 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Introduction to Python

    25 - 26 September 2018

    Elixir node event
    Introduction to Python https://tess.elixir-europe.org/events/introduction-to-python-58565280-e287-4767-ace0-6119a71e7452 Python is modern, object-oriented programming language which has become popular in several areas of software development. This course introduces the basic concepts of the Python programming language and presents selected Python modules. 2018-09-25 09:00:00 UTC 2018-09-26 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Linux 1 - Introduction to Linux

    27 - 28 September 2018

    Elixir node event
    Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux-bb3539d3-7e51-4840-83a0-d9c1a511c94d This two day course will cover the very basics of Unix/Linux. No previous knowledge about these operating systems is expected, as the course serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2018-09-27 09:30:00 UTC 2018-09-28 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Python for Biosciences

    3 - 4 December 2018

    Elixir node event
    Python for Biosciences https://tess.elixir-europe.org/events/python-for-biosciences Introduction to Python programming form the perspective of bioscience. 2018-12-03 09:00:00 UTC 2018-12-04 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Protein Modeling with Discovery Studio

    18 December 2018

    Elixir node event
    Protein Modeling with Discovery Studio https://tess.elixir-europe.org/events/protein-modeling-with-discovery-studio-6ea1d884-4caf-449a-8374-7663756824b3 Introduction to Discovery Studio protein modeling program, 2018-12-18 09:00:00 UTC 2018-12-18 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • CANCELED: Linux 1 - Introduction to Linux

    4 - 5 February 2019

    Elixir node event
    CANCELED: Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux-b672cae9-8a93-4bdb-9288-29788267e3ca This two day course will cover the very basics of Unix/Linux. No previous knowledge about these operating systems is expected, as the course serves as an introduction to those who are completely new to Linux. Both days include hands-on exercises. 2019-02-04 09:30:00 UTC 2019-02-05 16:15:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • CANCELED: Linux 3 – Scripting

    8 February 2019

    Elixir node event
    CANCELED: Linux 3 – Scripting https://tess.elixir-europe.org/events/linux-3-scripting-7f7fa041-f3cf-4532-98db-9579c102242f This one day course will introduce you to scripting techniques on Unix/Linux. 2019-02-08 09:00:00 UTC 2019-02-08 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • DATA CARPENTRY WORKSHOP

    14 - 15 February 2019

    Prague 6, Czechia

    DATA CARPENTRY WORKSHOP https://tess.elixir-europe.org/events/data-carpentry-workshop-1926a5a8-ad74-4c7f-a885-fd600fa29187 This event is an example-driven two-day workshop on basic computing skills. Short tutorials alternate with hands-on practical exercises, and participants are encouraged both to help one another, and to try applying what they have learned to their own research problems during and between sessions. Participants should bring their own laptop to work on. This should be a "real" laptop - not a Chromebook, tablet, etc. You should also be sure to have admin privileges on this computer. 2019-02-14 09:00:00 UTC 2019-02-15 17:00:00 UTC Elixir CZ, UCT Prague, Data Carpentry Technická 1903/3, 3, Technická, Prague 6, Czechia Technická 1903/3, 3, Technická Prague 6 Hlavní město Praha Czechia 16628 Genomics Data management [] spiwokv(you know what)vscht.cz https://www.eventbrite.com/e/university-of-chemistry-and-technology-prague-data-carpentry-workshop-tickets-52277237625 [] PhD studentspost-docs 30 workshops_and_courses first_come_first_served []
  • Advanced Parallel Programming

    27 February - 1 March 2019

    Elixir node event
    Advanced Parallel Programming https://tess.elixir-europe.org/events/advanced-parallel-programming This course addresses hybrid programming by combining OpenMP and MPI, as well as more advanced topics in MPI. Also, parallel I/O is discussed and exemplified in the course. 2019-02-27 09:00:00 UTC 2019-03-01 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • RNA-seq data analysis with Chipster

    6 March 2019

    Elixir node event
    RNA-seq data analysis with Chipster https://tess.elixir-europe.org/events/rna-seq-data-analysis-with-chipster This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis. The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required. 2019-03-06 09:00:00 UTC 2019-03-06 17:00:00 UTC The course is organised in the training room Dogmi at CSC, address Keilaranta 14, Espoo, Finland (more information). The course is organised in the training room Dogmi at CSC, address Keilaranta 14, Espoo, Finland (more information). [] [] [] workshops_and_courses [] []
  • Bioweek: Containers, clouds, clusters -combining CSC services in biosciences

    11 - 12 March 2019

    Elixir node event
    Bioweek: Containers, clouds, clusters -combining CSC services in biosciences https://tess.elixir-europe.org/events/bioweek-containers-clouds-clusters-combining-csc-services-in-biosciences CSC provides several alternative platforms for doing bioscience related computing. This course provides overview of these services so that after the course the students know how to choose a right platform combination for their analysis. No previous knowledge is required - the course is suitable for everybody! 2019-03-11 09:00:00 UTC 2019-03-12 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
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