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23 events found

Content provider: VIB Bioinformatics Core  or Australian BioCommons 

  • Image processing for correlated and multimodal imaging techniques

    19 October 2020 - 9 March 2021

    Elixir node event
    Image processing for correlated and multimodal imaging techniques https://tess.elixir-europe.org/events/image-processing-for-correlated-and-multimodal-imaging-techniques The purpose of this event is to dedicate three days of intense training to an audience with little or basic expertise. The program will first cover a full day of online lectures (19 October 2020), followed by two days of hands-on training (8 & 9 March 2021, Ghent). 2020-10-19 09:00:00 UTC 2021-03-09 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Basic statistics in R, online

    23 October - 20 November 2020

    Elixir node event
    Basic statistics in R, online https://tess.elixir-europe.org/events/basic-statistics-in-r-autumn-session This training gives an introduction to the use of the free statistical software language R. This introduction is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2020-10-23 09:00:00 UTC 2020-11-20 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • ARDC’s Australian eResearch and Data Skills Summit 2020

    26 - 30 October 2020

    Australia

    ARDC’s Australian eResearch and Data Skills Summit 2020 https://tess.elixir-europe.org/events/ardc-s-australian-eresearch-and-data-skills-summit-2020 2020-10-26 09:00:00 UTC 2020-10-30 17:00:00 UTC ARDC Australia Australia Bioinformatics [] [] [] [] [] bioinformaticslife sciences
  • Containers and Workflow Pipelines for reproducible and automated data analysis

    26 - 27 October 2020

    Elixir node event
    Containers and Workflow Pipelines for reproducible and automated data analysis https://tess.elixir-europe.org/events/containers-and-workflow-pipelines-for-reproducible-and-automated-data-analysis-7a613826-6388-464d-858a-b4dce0da9e43 Containers Learn the concept of and the difference between Docker & Singularity containers  Write a Docker recipe, build and run a Docker image and containers Pull and push Docker container to / from Docker hub Docker files and layers; Docker cashing Working with volumes Pull Docker containers as a Singularity image Pipelines Understand Nextflow's basic concepts: processes, channels, ... Write and run a Nextflow pipeline (using a Singularity containers) 2020-10-26 09:00:00 UTC 2020-10-27 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to Protein Structure Analysis, autumn session

    29 October 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, autumn session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-autumn-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-10-29 09:00:00 UTC 2020-10-29 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • WEBINAR: Galaxy Australia: enabling online data analysis for the research community

    4 November 2020

    WEBINAR: Galaxy Australia: enabling online data analysis for the research community https://tess.elixir-europe.org/events/webinar-galaxy-australia-enabling-online-data-analysis-for-the-research-community Galaxy is your ultimate research buddy - an online platform for biological research that gives you access to computational data analysis tools and workflows without the need for programming experience. It is supported by a rich collection of training materials and an active community of scientists. In this webinar we explore how Galaxy can transform your research through access to high performance computing power coupled with open, reproducible computational workflows and support from the Galaxy community. We’ll look at real-life examples of how Galaxy workflows are being applied to integrative meta-omics of microbial communities and how Galaxy is being leveraged to address the global challenges of COVID-19 research. Presenters: Dr Gareth Price, Service Manager, Galaxy Australia & Dr Johan Gustafsson, Bioinformatics Engagement Officer, Australian BioCommons Who the webinar is for: This webinar is suitable for life-science researchers. No prior knowledge of Galaxy or programming is required. 2020-11-04 13:00:00 UTC 2020-11-04 14:00:00 UTC Australian BioCommons Omics Bioinformatics [] [] Life Science Researchers workshops_and_courses first_come_first_served Data analysislife sciencesbioinformatics
  • WEBINAR: Back to basics: handling research data

    5 November 2020

    WEBINAR: Back to basics: handling research data https://tess.elixir-europe.org/events/https-www-biocommons-org-au-events-basics-data-movement How does the internet work and does it impact on your research? Dealing with data is an everyday part of modern biology. From small files to enormous data sets we are constantly moving and sharing data across the globe. How we move this data can have a big impact on our time and productivity. Go back to basics in this interactive webinar to explore the factors that influence data movement and discover tools that can be used to move data efficiently. We'll cover topics such as jargon busting, types of networks, data movement solutions and introduce CloudStor as a tool for data storage, transfer and analysis. This interactive webinar includes a hands-on component. There will be opportunities for discussion and questions. 2020-11-05 13:00:00 UTC 2020-11-05 15:00:00 UTC Australian BioCommons Australia, Australia Australia Australia Biology Data management Bioinformatics [] [] Biologists 30 workshops_and_courses first_come_first_served bioinformaticslife sciencesdata managementData skills
  • Research Data Management in Life Sciences

    9 - 10 November 2020

    Elixir node event
    Research Data Management in Life Sciences https://tess.elixir-europe.org/events/research-data-management-in-life-sciences Upon completion of this course, participants should have an understanding of what Research Data Management is, and why it is important in academic research.  They should have an understanding of the FAIR data principles, and how they can make data more FAIR. They should be able to successfully manage all types of research data and to document both the research itself, as well as the data in a comprehensive way.  2020-11-09 09:00:00 UTC 2020-11-10 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] publish and share datacreate preservation documentationMigrate data to best mediaMigrate data to best formatcreate user documentationEstablish copyrightcite data sourcesmanage and store datadescribe and document datacapture data with metadataexplore existing data resourcesplan consent for sharingplan data management design research
  • WEBINAR: Unifying package managers, workflow engines, and containers: computational reproducibility with BioNix

    10 - 11 November 2020

    Australia

    WEBINAR: Unifying package managers, workflow engines, and containers: computational reproducibility with BioNix https://tess.elixir-europe.org/events/webinar-unifying-package-managers-workflow-engines-and-containers-computational-reproducibility-with-bionix 2020-11-10 13:00:00 UTC 2020-11-11 14:00:00 UTC Australian BioCommons Australia Australia Bioinformatics Australian Biocommons [] [] [] [] bioinformaticsworkflows
  • WORKSHOP: Online data analysis for biologists - November 2020

    12 November 2020

    WORKSHOP: Online data analysis for biologists - November 2020 https://tess.elixir-europe.org/events/workshop-online-data-analysis-for-biologists-november-2020 Galaxy is an online platform for biological research that allows people to use computational data analysis tools and workflows without the need for programming experience. It is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It also captures run information so that workflows can be saved, repeated and shared efficiently via the web. This interactive beginners workshop will provide an introduction to the Galaxy interface, histories and available tools. The material covered in this workshop is freely available through the Galaxy Training Network. 2020-11-12 14:00:00 UTC 2020-11-12 17:00:00 UTC Australian BioCommons Australia, Australia Australia Australia Bioinformatics [] [] Biologists workshops_and_courses [] GalaxyData analysislifescience
  • Gentle hands-on introduction to Python programming

    16 - 30 November 2020

    Leuven, Belgium

    Elixir node event
    Gentle hands-on introduction to Python programming https://tess.elixir-europe.org/events/gentle-hands-on-introduction-to-python-programming-tbc-autumn Learning the basics of Python programming: different variables, reading files, writing files, conditional statements Being able to write a basic Python script from scratch 2020-11-16 09:00:00 UTC 2020-11-30 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • ABACBS-2020 Virtual Conference

    24 - 27 November 2020

    Australia

    ABACBS-2020 Virtual Conference https://tess.elixir-europe.org/events/abacbs-2020-virtual-conference 2020-11-24 09:00:00 UTC 2020-11-27 17:00:00 UTC ABACBS Australia Australia Bioinformatics [] [] [] [] [] bioinformaticslife sciences
  • Bulk RNASeq: from counts to differential expression

    24 November - 1 December 2020

    Elixir node event
    Bulk RNASeq: from counts to differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-from-counts-to-differential-expression-eea507f0-2ad6-4e12-83ca-71f9f9101a4a The course will show: R tools to generate count files like featureCounts, and summarizeOverlaps are demonstrated Count files from HTSeq-Count, FeatureCounts, Salmon or Kallisto are used to identify differentially expressed genes After the live session participants can analyze their own count files. Issues can be handled during the Q&A session. 2020-11-24 09:00:00 UTC 2020-12-01 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to Protein Structure Analysis, winter session

    30 November 2020 - 19 March 2021

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, winter session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-winter-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-11-30 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Basic statistics in R, online - winter session

    30 November 2020 - 19 March 2021

    Elixir node event
    Basic statistics in R, online - winter session https://tess.elixir-europe.org/events/basic-statistics-in-r-online-winter-session This training gives an introduction to the use of the free statistical software language R. This introduction is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2020-11-30 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Research Software Developers Day

    3 December 2020

    Elixir node event
    Research Software Developers Day https://tess.elixir-europe.org/events/research-software-engineers-conference The aim of this conference is to foster a community of research software developers and to collectively improve the standard of software used for scientific research. For this, our first edition, we focus on three main themes: reproducibility, software quality and infrastructure. ​If you have something to say, whether broadly related to the topics mentioned above or not, we kindly request you to submit a talk or workshop proposal via this link. If you miss out, you'll have another opportunity to give a lightning talk on the day.   The schedule is accessible at www.be-rse.org/.  2020-12-03 09:00:00 UTC 2020-12-03 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • DDA and DIA proteomic analysis in Galaxy

    3 - 4 December 2020

    Ghent, Belgium

    Elixir node event
    DDA and DIA proteomic analysis in Galaxy https://tess.elixir-europe.org/events/label-free-proteomics-data-analysis-in-galaxy At the beginning of the course we will introduce you to the Galaxy platform and teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.  Then, we will dive into proteomic analyses which are split up into two parts. First, we will use MaxQuant to analyze classical proteomic shotgun (label-free data dependent acquisition = DDA) data. MaxQuant is a standalone tool that enables peptide and protein identification as well as quantification.  In the second part we will perform a complete analysis workflow for data independent acquisition (DIA) data using a variety of open-source tools (including diapysef, OpenSwath, Pyprophet, MSstats). This includes generating a peptide library, refining the library and utilizing the library to identify and quantify peptides in DIA data.  2020-12-03 09:00:00 UTC 2020-12-04 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • WORKSHOP: Online data analysis for biologists - December 2020

    9 December 2020

    WORKSHOP: Online data analysis for biologists - December 2020 https://tess.elixir-europe.org/events/workshop-online-data-analysis-for-biologists-december-2020 Galaxy is an online platform for biological research that allows people to use computational data analysis tools and workflows without the need for programming experience. It is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It also captures run information so that workflows can be saved, repeated and shared efficiently via the web. This interactive beginners workshop will provide an introduction to the Galaxy interface, histories and available tools. The material covered in this workshop is freely available through the Galaxy Training Network. 2020-12-09 14:00:00 UTC 2020-12-09 17:00:00 UTC Australian BioCommons Australia, Australia Australia Australia Bioinformatics [] [] Biologists workshops_and_courses [] bioinformaticslife sciences
  • WEBINAR: Plant genomics: chloroplast genome assembly using Galaxy Australia

    10 December 2020

    Australia

    WEBINAR: Plant genomics: chloroplast genome assembly using Galaxy Australia https://tess.elixir-europe.org/events/webinar-plant-genomics-chloroplast-genome-assembly-using-galaxy-australia-df405f97-a446-47f2-89a5-9bfaea1c9f9b 2020-12-10 01:00:00 UTC 2020-12-10 02:00:00 UTC Australian BioCommons Australia, Australia Australia Australia Bioinformatics Australian Biocommons [] [] [] [] bioinformaticslife sciences
  • Introduction to Git & GitHub

    10 December 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-tbc-autumn Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up & configurations Working locally: Create a repository, clone, edit, staging commits, commit & push Working with your history & logs Working in a project: Forking, branching & pull requests How to version control your code in Rstudio with GitHub 2020-12-10 09:00:00 UTC 2020-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Liquid-Liquid Phase Separation

    14 - 15 December 2020

    Elixir node event
    Liquid-Liquid Phase Separation https://tess.elixir-europe.org/events/liquid-liquid-phase-separation-09e3b786-957d-4d94-9513-3bcfeb0269b7 The aim of this training day is – after a brief introduction – to provide guidelines for accurate experimental characterization of LLPS processes in vitro and in cells. We will end the day with a discussion on the implications of dysregulation of liquid-liquid phase separation for human disease. We have invited top-notch speakers on this topic to inform you on the latest developments.   2020-12-14 09:00:00 UTC 2020-12-15 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Factorial design and analysis

    14 - 15 December 2020

    Elixir node event
    Factorial design and analysis https://tess.elixir-europe.org/events/factorial-design-and-analysis After attending this course, you will be able to reason about you experiment and come up with a design and analysis that fits your situations best, rather than to settle for a suboptimal textbook solution. 2020-12-14 09:00:00 UTC 2020-12-15 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Deep learning in biology

    17 - 18 December 2020

    Elixir node event
    Deep learning in biology https://tess.elixir-europe.org/events/deep-learning-in-biology-autumn-session Large amounts of data and compute resources have enabled the development of high-performance machine learning models. This is particularly due to deep learning techniques. By looking at many data samples, these models can find structure in the data that is useful for predictive and explorative analysis: e.g. classification, clustering, data generation, dimensionality reduction, etc. The most popular applications within biotechnology are concerned with image segmentation, diagnostics, sequence analysis, etc. However, deep learning models are far from straightforward to implement correctly due to the many different hyperparameter settings, optimization procedures, architecture choices, etc. In this course, we will make use of Jupyter Notebook and Keras, which are both based on Python, to apply deep learning techniques on both bio informatics and bio image informatics data. We aim to work towards applications that participants would like to study. 2020-12-17 09:00:00 UTC 2020-12-18 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []

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