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  • ELIXIR Workshop Genomics

    7 - 8 November 2016

    Bruxelles, Belgium

    Elixir node event
    ELIXIR Workshop Genomics https://tess.elixir-europe.org/events/elixir-workshop-genomics Goal The fast generation of large amounts of data is fundamentally changing the way how research is done today. Many domains of research are challenged with managing, analyzing and sharing genomics data. This is not just a challenge, it is an oppurtunity to implement this workshop for researchers to learn basic handling of genomics concepts, skills and tools. This workshop is aimed at researchers in the life sciences at all career stage and is designed for learners with little to no prior knowledge of Linux and command line tools or biological networks in Cytoscape. A basic knowledge of programming in R is recommended. ​ Workshop Topics The main ambition or this workshop is that researchers get more familiar with genomics data and handle it in a more efficient way. The following topics will be covered during the workshop.   DAY 1 Introduction to Linux and the command line The first session will introduce you to the use of Linux and the command line for managing and analyzing genomics data.   DAY 2​ Data manipulation in R This session gives an introduction to the use of the R packages plyr and ggplot2 for data manipulation and subsequent graphing. Initiation Cytoscape In this tutorial, you will be introduced to the basics of Cytoscape (how to make a network, change the visualisation parameters such as the layout, ...), and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. 2016-11-07 09:00:00 UTC 2016-11-08 17:00:00 UTC ELIXIR Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise, Bruxelles, Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise Bruxelles Belgium Data visualisation Molecular interactions, pathways and networks Bioinformatics VIB christof.debo@vib.be ELIXIR-BE PhD studentsPost Docs [] [] Cytoscape R-programming Linux
  • CLC Bio Main Workbench, Leuven

    17 February 2017

    Leuven, Belgium

    Elixir node event
    CLC Bio Main Workbench, Leuven https://tess.elixir-europe.org/events/clc-bio-main-workbench-leuven You will learn to: work with the CLC Main Workbench user interface: create folders, import data, adjust settings... open sequences, view and manipulate annotations align sequences and perform BLAST searches virtually PCR-amplify a gene and insert it into a vector assemble sequences generated by Sanger sequencing into contigs and find conflicts between sequence reads​ 2017-02-17 13:00:00 UTC 2017-02-17 16:00:00 UTC VIB Bioinformatics Core O&N4 room 07.339 Gasthuisberg, Leuven, Belgium O&N4 room 07.339 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • GATK workshop

    20 - 22 February 2017

    Leuven, Belgium

    Elixir node event
    GATK workshop https://tess.elixir-europe.org/events/gatk-workshop This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. You will learn  why each step is essential to the variant discovery process what are the operations performed on the data at each step how to use the GATK tools to get the most accurate and reliable results out of your dataset. • samtools Familiarity with Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non-human data, and we will address some questions regarding adaptations that are needed for analysis of non-human data, but we will not go into much detail on those points​. The training will take 3 days, you can register for each day separately 2017-02-20 09:30:00 UTC 2017-02-22 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Vlaams-Brabant Belgium 3010 Sequence analysis [] [] [] [] [] GATKBroad's Genome Analysis Toolkit
  • Hands-on introduction to Perl programming

    6 - 13 March 2017

    Leuven, Belgium

    Elixir node event
    Hands-on introduction to Perl programming https://tess.elixir-europe.org/events/hands-on-introduction-to-perl-programming Learning the basics of Perl programming: different variables, reading files, writing files, regex. Being able to write small scripts to parse text files Using Perl in windows. Day 2 an example about parsing through a list of files introduction into Perl one-liners subroutines and libraries downloading and using libraries ​​​ 2017-03-06 09:30:00 UTC 2017-03-13 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Prep course for Biopython

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Prep course for Biopython https://tess.elixir-europe.org/events/prep-course-for-biopython This training is an introduction to the Biopython training. This training is intended for people who have no experience with Linux and will teach them all knowledge of Linux command line that is required to successfully follow the Biopython training. If you want to follow  the Biopython training​ and you have no experience with Linux command line, you have to follow this introduction.  2017-03-31 09:30:00 UTC 2017-03-31 17:00:00 UTC VIB Bioinformatics Core O&N4 room 06.239 Gasthuisberg, Leuven, Belgium O&N4 room 06.239 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Ghent

    18 April 2017

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-638a1f0b-2d27-4f09-b291-72bee6d64baa 2017-04-18 10:00:00 UTC 2017-04-18 12:00:00 UTC VIB Bioinformatics Core PC room V114 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • RNA-Seq prep course

    25 April 2017

    Leuven, Belgium

    Elixir node event
    RNA-Seq prep course https://tess.elixir-europe.org/events/rna-seq-prep-course 2017-04-25 09:30:00 UTC 2017-04-25 16:00:00 UTC VIB Bioinformatics Core Gasthuisberg O&N4 room 07.339, Leuven, Belgium Gasthuisberg O&N4 room 07.339 Leuven Belgium 3000 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Ghent

    2 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent 2017-05-02 09:00:00 UTC 2017-05-02 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Leuven

    4 May 2017

    Leuven, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Leuven https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-leuven 2017-05-04 09:00:00 UTC 2017-05-04 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Initiation GIMP and Inkscape - Ghent

    9 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape - Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent-bd18f6fb-c469-418d-8b9e-bd73e73ce890 2017-05-09 09:00:00 UTC 2017-05-09 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Centre, Ghent, Belgium Bio-Accelerator Meeting Centre Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation to Cytoscape

    2 June 2017

    Leuven, Belgium

    Elixir node event
    Initiation to Cytoscape https://tess.elixir-europe.org/events/initiation-to-cytoscape In this course, you will be introduced to the basics of Cytoscape, and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. The list of topics covered in this hands-on training: Cytoscape is a free, Open Source bioinformatics environment for integration, visualisation, and query of biological networks.? Registration is open for VIB and non-VIB employees and is only available on this website. For any questions about this training, contact bits*Replace*With*At*Sign*vib.be 2017-06-02 09:30:00 UTC 2017-06-02 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven Hotel, Leuven, Belgium Park Inn by Radisson Leuven Hotel Leuven Belgium 3010 [] [] [] [] [] []
  • In silico cloning with SnapGene, Leuven

    8 June 2017

    Leuven, Belgium

    Elixir node event
    In silico cloning with SnapGene, Leuven https://tess.elixir-europe.org/events/in-silico-cloning-with-snapgene-leuven 2017-06-08 13:30:00 UTC 2017-06-08 16:30:00 UTC VIB Bioinformatics Core O&N4 room 06.239 Gasthuisberg, Leuven, Belgium O&N4 room 06.239 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • In silico cloning with SnapGene, Ghent

    9 June 2017

    Ghent (Zwijnaarde), Belgium

    Elixir node event
    In silico cloning with SnapGene, Ghent https://tess.elixir-europe.org/events/in-silico-cloning-with-snapgene-ghent 2017-06-09 13:30:00 UTC 2017-06-09 16:30:00 UTC VIB Bioinformatics Core VIB Bioinformatics Core, Ghent (Zwijnaarde), Belgium VIB Bioinformatics Core Ghent (Zwijnaarde) Belgium 9052 [] [] [] [] [] []
  • Protein Structure Analysis

    15 June 2017

    Ghent, Belgium

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis-f095d4f5-e03b-4b1d-9f38-38dff017174a b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n' 2017-06-15 09:30:00 UTC 2017-06-15 17:00:00 UTC ELIXIR Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor), Ghent, Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor) Ghent Belgium 9052 [] [] [] [] [] []
  • Biomolecular data mining: a hands-on training

    11 - 13 September 2017

    Antwerpen, Belgium

    Elixir node event
    Biomolecular data mining: a hands-on training https://tess.elixir-europe.org/events/biomolecular-data-mining-a-hands-on-training This course aims to introduce the core principles and biomedical applications of different data mining and machine learning techniques in a hands-on manner. It will tackle both unsupervised (clustering, frequent pattern mining, data projection) and supervised (classification) techniques. The methods that will be seen include hierarchical clustering, k- means clustering, item set mining, association rule mining, principle component analysis, support vector machines, random forests, bayesian networks and artificial neural networks. Attendees will be introduced to the basic operations of these data mining techniques, with a focus on the practical use and interpretation of these procedures rather than the mathematical formulas. In addition, attendants will be introduced to some important data processing and performance evaluation methods related to these data mining techniques. The software used in this course will be R. The course itself will consist of 50% theory lessons, 40% hands-on practicals and 10% application case studies. Organised by biomina: Dr. Pieter Meysman Prof. dr. Kris Laukens 2017-09-11 09:00:00 UTC 2017-09-13 17:00:00 UTC biomina Antwerpen Groenenborgerlaan, Antwerpen, Belgium Antwerpen Groenenborgerlaan Antwerpen Antwerpen Belgium 2020 Biomedical science Machine learning Data mining University of Antwerp Dr. Pieter Meysman Prof. dr. Kris Laukens ELIXIR Belgium and Flemish Region PhD studentsPostDocs 30 workshops_and_courses registration_of_interest []
  • Functional Plant Bioinformatics - PLAZA

    14 - 15 September 2017

    Ghent, Belgium

    Elixir node event
    Functional Plant Bioinformatics - PLAZA https://tess.elixir-europe.org/events/functional-plant-bioinformatics-plaza 2017-09-14 10:00:00 UTC 2017-09-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Center, Ghent, Belgium Bio-Accelerator Meeting Center Ghent Belgium 9052 [] [] [] [] [] []
  • Python for Data Processing

    5 - 6 October 2017

    Heverlee, Belgium

    Elixir node event
    Python for Data Processing https://tess.elixir-europe.org/events/python-for-data-processing 2017-10-05 09:30:00 UTC 2017-10-06 17:00:00 UTC VIB Bioinformatics Core ICTS Education Center KUL Leslokaal A, Heverlee, Belgium ICTS Education Center KUL Leslokaal A Heverlee Belgium 3001 [] [] [] [] [] []
  • Introduction to gene regulation

    9 October 2017

    Gent, Belgium

    Elixir node event
    Introduction to gene regulation https://tess.elixir-europe.org/events/introduction-to-gene-regulation 2017-10-09 09:30:00 UTC 2017-10-09 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Gent, Belgium Bio-Accelerator Gent Belgium 9052 [] [] [] [] [] []
  • First Steps with R in Life Sciences

    16 - 17 October 2017

    Lausanne

    Elixir node event
    First Steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences Overview R is a complete, flexible and open source system for statistical analysis which has become a tool of choice for biologists and biomedical scientists who need to analyze and visualize large amounts of data. Due to its popularity, R is 2017-10-16 09:00:00 UTC 2017-10-17 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] [] workshops_and_courses [] []
  • Best practices in programming 2017

    23 - 24 October 2017

    Basel

    Elixir node event
    Best practices in programming 2017 https://tess.elixir-europe.org/events/best-practices-in-programming-2017 This workshop is organised by the SIB PhD Training Network. Priority is given to its members, but is open to everyone. 2017-10-23 09:00:00 UTC 2017-10-24 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] [] workshops_and_courses [] []
  • Electronic Lab Notebook Introduction Ghent

    25 October 2017

    Gent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-fcc80d61-9755-4fe2-8067-00f12ea03c2f 2017-10-25 10:00:00 UTC 2017-10-25 12:00:00 UTC VIB Bioinformatics Core PC Room V114 First floor front building VIB Research Building, Gent, Belgium PC Room V114 First floor front building VIB Research Building Gent Belgium 9052 [] [] [] [] [] []
  • Snakemake for scalable and reproducible data analysis

    3 November 2017

    Zurich

    Elixir node event
    Snakemake for scalable and reproducible data analysis https://tess.elixir-europe.org/events/snakemake-for-scalable-and-reproducible-data-analysis Please note that his course is oversubscribed. You can still apply for it by clicking on the boutton below and your name will be added to the waiting list. 2017-11-03 09:00:00 UTC 2017-11-03 00:00:00 UTC SIB, Zurich SIB Zurich [] training@sib.swiss [] [] workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    7 November 2017

    Basel

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2017-11-07 09:00:00 UTC 2017-11-07 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] [] workshops_and_courses [] []
  • Autumn School: Machine Learning applied to Systems Biology

    19 - 24 November 2017

    Schwarzenberg

    Elixir node event
    Autumn School: Machine Learning applied to Systems Biology https://tess.elixir-europe.org/events/autumn-school-machine-learning-applied-to-systems-biology We have received more applications than available seats and therefore we have closed the course registration. Thank you for understanding. This course is organised by the SIB PhD Training Network, and SystemsX.ch. 2017-11-19 09:00:00 UTC 2017-11-24 00:00:00 UTC SIB, Schwarzenberg SIB Schwarzenberg [] training@sib.swiss [] [] workshops_and_courses [] []
  • High Performance Computing for genomic applications

    23 - 24 November 2017

    Basel

    Elixir node event
    High Performance Computing for genomic applications https://tess.elixir-europe.org/events/high-performance-computing-for-genomic-applications Overview The course "High Performance Computing for genomic applications" is organized for the D-BSSE researchers by Scientific IT Services on 23-24 November 2017. 2017-11-23 09:00:00 UTC 2017-11-24 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] [] workshops_and_courses [] []
  • Analysis of public microarray data using Genevestigator

    24 November 2017

    Gent, Belgium

    Elixir node event
    Analysis of public microarray data using Genevestigator https://tess.elixir-europe.org/events/analysis-of-public-microarray-data-using-genevestigator 2017-11-24 09:30:00 UTC 2017-11-24 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Gent, Belgium Bio-Accelerator Gent Belgium 9052 [] [] [] [] [] []
  • Proteogenomics and Immunopeptidomics

    29 November - 1 December 2017

    Lausanne

    Elixir node event
    Proteogenomics and Immunopeptidomics https://tess.elixir-europe.org/events/proteogenomics-and-immunopeptidomics This course is co-organised by the CUSO/StarOmics doctoral program. Priority is given to its members, but is open to everyone. Overview Proteogenomics is an area of research at the interface of proteomics and genomics. 2017-11-29 09:00:00 UTC 2017-12-01 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] [] workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    7 December 2017

    Lausanne

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-6d081446-8e55-4fb7-b566-2178c29e38e5 Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2017-12-07 09:00:00 UTC 2017-12-07 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] [] workshops_and_courses [] []
  • Statistics for Life Scientists

    11 - 14 December 2017

    Basel

    Elixir node event
    Statistics for Life Scientists https://tess.elixir-europe.org/events/statistics-for-life-scientists Overview Statistics are an integral aspect of scientific research, particularly for the life sciences which rely heavily on quantitative methodologies. 2017-12-11 09:00:00 UTC 2017-12-14 00:00:00 UTC SIB, Basel SIB Basel [] training@sib.swiss [] [] workshops_and_courses [] []
  • Advanced R

    11 - 13 December 2017

    Lausanne

    Elixir node event
    Advanced R https://tess.elixir-europe.org/events/advanced-r Overview This 3-day advanced course is targeted at life scientists or bioinformaticians who are already comfortable using the R statistical software in practice, and want to extend their knowledge. 2017-12-11 09:00:00 UTC 2017-12-13 00:00:00 UTC SIB, Lausanne SIB Lausanne [] training@sib.swiss [] [] workshops_and_courses [] []
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