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156 events found

Scientific topics: Bioinformatics 

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Content provider: VIB Bioinformatics Core  or EMBL-ABR 

  • ELIXIR Workshop Genomics

    7 - 8 November 2016

    Bruxelles, Belgium

    Elixir node event
    ELIXIR Workshop Genomics https://tess.elixir-europe.org/events/elixir-workshop-genomics Goal The fast generation of large amounts of data is fundamentally changing the way how research is done today. Many domains of research are challenged with managing, analyzing and sharing genomics data. This is not just a challenge, it is an oppurtunity to implement this workshop for researchers to learn basic handling of genomics concepts, skills and tools. This workshop is aimed at researchers in the life sciences at all career stage and is designed for learners with little to no prior knowledge of Linux and command line tools or biological networks in Cytoscape. A basic knowledge of programming in R is recommended. ​ Workshop Topics The main ambition or this workshop is that researchers get more familiar with genomics data and handle it in a more efficient way. The following topics will be covered during the workshop.   DAY 1 Introduction to Linux and the command line The first session will introduce you to the use of Linux and the command line for managing and analyzing genomics data.   DAY 2​ Data manipulation in R This session gives an introduction to the use of the R packages plyr and ggplot2 for data manipulation and subsequent graphing. Initiation Cytoscape In this tutorial, you will be introduced to the basics of Cytoscape (how to make a network, change the visualisation parameters such as the layout, ...), and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. 2016-11-07 09:00:00 UTC 2016-11-08 17:00:00 UTC ELIXIR Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise, Bruxelles, Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise Bruxelles Belgium Data visualisation Molecular interactions, pathways and networks Bioinformatics VIB christof.debo@vib.be ELIXIR-BE PhD studentsPost Docs [] [] Cytoscape R-programming Linux
  • Introduction to Galaxy Workshop

    12 April 2017

    Saint Lucia, Australia

    Introduction to Galaxy Workshop https://tess.elixir-europe.org/events/introduction-to-galaxy-workshop 2017-04-12 14:00:00 UTC 2017-04-12 16:00:00 UTC University of Queensland Multi-media room, Queensland Bioscience Precinct, University of Queensland, Saint Lucia, Australia Multi-media room, Queensland Bioscience Precinct, University of Queensland Saint Lucia Brisbane City Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Galaxy
  • Introduction to Unix

    3 May 2017

    Carlton, Australia

    Introduction to Unix https://tess.elixir-europe.org/events/introduction-to-unix-8a2b302a-4c70-4949-9950-b31fcf2c2ba5 Knowledge of the Unix operating system is fundamental to being productive on HPC systems such as those offered by Melbourne Bioinformatics. This workshop will introduce you to the fundamental Unix concepts by way of a series of hands-on exercises. 2017-05-03 09:30:00 UTC 2017-05-03 12:30:00 UTC Melbourne Bioinformatics Lab-14, Melbourne Bioinformatics, 700 Swanston St, 700, Swanston Street, Carlton, Australia Lab-14, Melbourne Bioinformatics, 700 Swanston St, 700, Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Computerprogramming
  • Introduction to Galaxy and the Genomics Virtual Laboratory

    4 May 2017

    Carlton, Australia

    Introduction to Galaxy and the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomics-virtual-laboratory Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy’s interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2017-05-04 09:30:00 UTC 2017-05-04 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] genomics
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 May 2017

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl In this tutorial we will cover the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2017-05-04 13:30:00 UTC 2017-05-04 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700, Swanston Street, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700, Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-Seq
  • Variant Calling with Galaxy and the GVL for beginners

    5 May 2017

    Carlton, Australia

    Variant Calling with Galaxy and the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-and-the-gvl-for-beginners In this tutorial we cover the concepts of detecting small variants (SNVs and indels) in human genomic DNA using a small set of reads from chromosome 22. The tutorial is designed to introduce the tools, datatypes and workflow of variant detection. We will align reads to the genome, look for differences between reads and reference genome sequence, and filter the detected genomic variation manually to understand the computational basis of variant calling. 2017-05-05 09:30:00 UTC 2017-05-05 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston Street, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant-calling
  • Common Workflow Language with Michael Crusoe

    11 May 2017

    University of Melbourne, Australia

    Common Workflow Language with Michael Crusoe https://tess.elixir-europe.org/events/common-workflow-language-with-michael-crusoe 2017-05-11 12:00:00 UTC 2017-05-11 13:00:00 UTC Melbourne Bioinformatics FW Jones Theatre, Level 3, Medical Building , University of Melbourne, Australia FW Jones Theatre, Level 3, Medical Building University of Melbourne Australia Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] programmingWorkflowsBioinformatics
  • Open source science with Git and GitHub

    23 May 2017

    Carlton, Australia

    Open source science with Git and GitHub https://tess.elixir-europe.org/events/open-source-science-with-git-and-github-a46066bb-8d85-4c96-8cc6-1f4d8d098e1d Learn how to keep a record your code’s evolution over time using the git version control system, used by companies and open-source projects worldwide. Git allows you to easily maintain snapshots of your code as you make changes, keep multiple parallel versions of your code, and collaborate with others. 2017-05-23 13:00:00 UTC 2017-05-23 17:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Computer Programming
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • Open source science with Monica Munoz-Torres

    28 June 2017

    University of Melbourne, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science 2017-06-28 09:00:00 UTC 2017-06-28 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Melbourne Bioinformatics [] [] workshops_and_courses [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    29 June 2017

    Hobart, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-d4d8d495-d20f-464e-9c28-1b6fcd88814b 2017-06-29 09:00:00 UTC 2017-06-29 17:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania Hobart Australia Bioinformatics University of Tasmania [] [] [] [] Bioinformatics
  • Open source science with Monica Munoz-Torres

    30 June 2017

    Hobart, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres 2017-06-30 09:00:00 UTC 2017-06-30 12:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart Hobart Australia Bioinformatics University of Tasmania [] [] [] [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    3 July - 10 May 2017

    James Cook University, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-e0429e7a-0897-4426-bb63-1136a2131375 2017-07-03 09:00:00 UTC 2017-05-10 17:00:00 UTC James Cook University Room 034-011C, James Cook University, Townsville Campus, James Cook University, Australia Room 034-011C, James Cook University, Townsville Campus James Cook University Australia Bioinformatics James Cook University ira.cooke@jcu.edu.au [] [] workshops_and_courses [] Bioinformaticsgenomics
  • Introduction to Metagenomics workshop

    11 - 12 July 2017

    Sydney, Australia

    Introduction to Metagenomics workshop https://tess.elixir-europe.org/events/introduction-to-metagenomics-workshop The hands-on Introduction to Metagenomics workshop introduces tools and workflows used to explore amplicon and shotgun metagenomics sequence data. 2017-07-11 09:00:00 UTC 2017-07-12 17:00:00 UTC Bioplatforms Australia Macquarie University, Sydney, Australia Macquarie University Sydney Australia Genomics Bioinformatics Macquarie University kchamp@bioplatforms.com [] [] [] [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    12 July 2017

    The University of Queensland, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-9ecb2f55-2050-4e45-9349-69a2ab8676f3 2017-07-12 09:00:00 UTC 2017-07-12 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct The University of Queensland Australia Bioinformatics University of QueenslandQCIF [] [] workshops_and_courses [] Bioinformatics
  • Open source science with Monica Munoz-Torres

    13 July 2017

    The University of Queensland, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres-79282d2b-864b-492c-93a0-3c5b57cbec95 2017-07-13 13:00:00 UTC 2017-07-13 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia , The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia The University of Queensland Australia Bioinformatics University of QueenslandQCIF [] [] workshops_and_courses [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    17 July 2017

    Nedlands, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-de406051-7f73-4596-9937-e4489eff43f9 2017-07-17 09:00:00 UTC 2017-07-17 17:00:00 UTC Australian Genome Research Facility Harry Perkins Institute of Medical Research, 6 Verdun St, Nedlands, Australia Harry Perkins Institute of Medical Research, 6 Verdun St Nedlands Perth, Western Australia Australia Bioinformatics Genomics Australian Genome Research FacilityHarry Perkins Institute of Medical Research [] [] workshops_and_courses [] Bioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • An Introduction to Genomics with R

    18 July 2017

    Adelaide, Australia

    An Introduction to Genomics with R https://tess.elixir-europe.org/events/an-introduction-to-genomics-with-r 2017-07-18 09:00:00 UTC 2017-07-18 17:00:00 UTC University of Adelaide Room 422, Horace Lamb Building, The University of Adelaide, Adelaide, Australia Room 422, Horace Lamb Building, The University of Adelaide Adelaide SA Australia Bioinformatics University of Adelaide [] [] workshops_and_courses [] R-programminggenomics
  • Introduction to R

    24 July 2017

    Clayton, Australia

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-fa4063f1-c129-4635-8b07-6e906e39750c 2017-07-24 10:00:00 UTC 2017-07-24 17:00:00 UTC Monash Bioinformatics Training Room 2 (T2), Matheson Library, Monash University, Clayton, Australia Training Room 2 (T2), Matheson Library, Monash University Clayton Australia Bioinformatics Monash University [] [] workshops_and_courses [] R-programming
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Introduction to Programming with Python

    26 July 2017

    Sydney, Australia

    Introduction to Programming with Python https://tess.elixir-europe.org/events/introduction-to-programming-with-python 2017-07-26 09:00:00 UTC 2017-07-26 16:00:00 UTC Intersect Australia Fisher Training Room 210, Fisher Library, Camperdown Campus, The University of Sydney, Sydney, Australia Fisher Training Room 210, Fisher Library, Camperdown Campus, The University of Sydney Sydney Australia Bioinformatics University of Sydney [] [] workshops_and_courses [] Python
  • Introduction to Programming with R

    27 July 2017

    Sydney, Australia

    Introduction to Programming with R https://tess.elixir-europe.org/events/introduction-to-programming-with-r-607032a5-9a9f-443a-b6a8-fe4358cdeb19 2017-07-27 09:30:00 UTC 2017-07-27 16:30:00 UTC Intersect Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building , Sydney, Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building Sydney Australia Bioinformatics University of New South Wales [] [] workshops_and_courses [] R-programming
  • Genome assembly using Galaxy

    2 - 3 August 2017

    Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy 2017-08-02 09:00:00 UTC 2017-08-03 12:30:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Genome AssemblyGalaxy
  • Software Carpentry - Introduction to Programming in R

    8 August 2017

    Melbourne, Australia

    Software Carpentry - Introduction to Programming in R https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-in-r 2017-08-08 09:30:00 UTC 2017-08-08 16:30:00 UTC Intersect Australia HS3 401, La Trobe University - Bundoora , Melbourne, Australia HS3 401, La Trobe University - Bundoora Melbourne Australia Bioinformatics La Trobe University [] [] workshops_and_courses [] R-programming
  • Introduction to Unix

    9 August 2017

    Sydney, Australia

    Introduction to Unix https://tess.elixir-europe.org/events/introduction-to-unix-6581cad8-4471-413c-9c69-af92ed0034d0 2017-08-09 09:30:00 UTC 2017-08-09 16:30:00 UTC Intersect Australia USYD Camperdown, CPC Room 60.03, Level 6, Charles Perkins Centre D17, Sydney, Australia USYD Camperdown, CPC Room 60.03, Level 6, Charles Perkins Centre D17 Sydney Australia Bioinformatics University of Sydney [] [] workshops_and_courses [] ProgrammingUnix
  • Research Data Management

    16 August - 21 July 2017

    Sydney, Australia

    Research Data Management https://tess.elixir-europe.org/events/research-data-management 2017-08-16 10:00:00 UTC 2017-07-21 13:00:00 UTC Intersect Australia Western Sydney University, Hawkesbury Campus, Londonderry Road, Sydney, Australia Western Sydney University, Hawkesbury Campus, Londonderry Road Sydney Australia Bioinformatics Western Sydney University [] [] workshops_and_courses [] data management
  • Using Databases and SQL

    25 August 2017

    Melbourne, Australia

    Using Databases and SQL https://tess.elixir-europe.org/events/using-databases-and-sql-1bf7416d-eff0-4f81-b51a-f613e41209eb 2017-08-25 09:30:00 UTC 2017-08-25 13:00:00 UTC Intersect Australia HS3 402, La Trobe University, Melbourne Campus, Plenty Road, Melbourne, Australia HS3 402, La Trobe University, Melbourne Campus, Plenty Road Melbourne Australia Bioinformatics La Trobe University [] [] workshops_and_courses [] Biological databases
  • Using Databases and SQL

    28 August - 28 July 2017

    Australia

    Using Databases and SQL https://tess.elixir-europe.org/events/using-databases-and-sql-19c07043-4d60-4ccb-89f1-72dca7078841 2017-08-28 13:30:00 UTC 2017-07-28 16:30:00 UTC Intersect Australia Computer Lab G16-G17, Ground Floor, Wallace Wurth Building, UNSW Sydney, Australia Computer Lab G16-G17, Ground Floor, Wallace Wurth Building, UNSW Sydney Australia Bioinformatics University of New South Wales [] [] workshops_and_courses [] Databases
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