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  • PostGIS paikkatietokannan käyttö

    11 - 12 April 2016

    Elixir node event
    PostGIS paikkatietokannan käyttö https://tess.elixir-europe.org/events/postgis-paikkatietokannan-kaytto PostGIS peruskurssi, missä opit asentamaan tietokannan, kyselemään ja analysoimaan sitä SQL-lausekkeilla ja konfiguroimaan muun muassa karttaprojektioihin liittyviä ongelmia. 2016-04-11 09:00:00 UTC 2016-04-12 16:15:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: Running array jobs in Taito

    12 April 2016

    Elixir node event
    Webinar: Running array jobs in Taito https://tess.elixir-europe.org/events/webinar-running-array-jobs-in-taito How to run array jobs in Taito. Join the webinar here: https://connect.funet.fi/webinar 2016-04-12 13:00:00 UTC 2016-04-12 13:30:00 UTC CSC Join the webinar here: https://connect.funet.fi/webinar Join the webinar here: https://connect.funet.fi/webinar [] [] [] [] [] []
  • Elmer FEM Course

    13 - 14 April 2016

    Elixir node event
    Elmer FEM Course https://tess.elixir-europe.org/events/elmer-fem-course Elmer FEM Course presents the basics of the open source finite element software for multi-physical problems. 2016-04-13 09:00:00 UTC 2016-04-14 16:30:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Advanced Threading and Optimization

    18 - 20 April 2016

    Elixir node event
    Advanced Threading and Optimization https://tess.elixir-europe.org/events/advanced-threading-and-optimization The course includes topics on code optimization for x86 platforms and efficient code parallelization using OpenMP threading. Advanced aspects of threading and optimization, such as new features of OpenMP 4.0, will be covered during the course. Some performance aspects of MPI will also be discussed. 2016-04-18 09:00:00 UTC 2016-04-20 16:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: Module system on Taito

    19 April 2016

    Elixir node event
    Webinar: Module system on Taito https://tess.elixir-europe.org/events/webinar-module-system-on-taito This webinar explains how to use the module system on Taito. 2016-04-19 13:00:00 UTC 2016-04-19 13:30:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • Webinar: Using FGCI grid

    26 April 2016

    Elixir node event
    Webinar: Using FGCI grid https://tess.elixir-europe.org/events/webinar-using-fgci-grid This webinar demonstrates, how camputing tasks can be submitted to the The Finnish Grid and Cloud Infrasructuire (FGCI). With the ARC middleware jobs can be submitted to FGCI as well from the servers of CSC and from the users local environment. 2016-04-26 13:30:00 UTC 2016-04-26 14:00:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • Vaadin meetup at CSC

    28 April 2016

    Elixir node event
    Vaadin meetup at CSC https://tess.elixir-europe.org/events/vaadin-meetup-at-csc This time our Vaadin meetup is hosted by CSC, the home of Finland's most powerful computers. We'll first hear how CSC is using Vaadin in their services, then we get a brief introduction to Spring Boot and Vaadin and the remaining time is reserved for informal Q&A and hacking. 2016-04-28 15:00:00 UTC 2016-04-28 18:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Protein Modeling with Discovery Studio

    10 May 2016

    Elixir node event
    Protein Modeling with Discovery Studio https://tess.elixir-europe.org/events/protein-modeling-with-discovery-studio This one day course provides introduction to Discovery Studio protein modeling enviroment. 2016-05-10 09:00:00 UTC 2016-05-10 17:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • POSTPONED: cPouta Cloud Course

    11 May 2016

    Elixir node event
    POSTPONED: cPouta Cloud Course https://tess.elixir-europe.org/events/cpouta-cloud-course This course will give a practical introduction to using CSC's cPouta cloud service. 2016-05-11 09:00:00 UTC 2016-05-11 17:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: How to use Techila with R

    17 May 2016

    Elixir node event
    Webinar: How to use Techila with R https://tess.elixir-europe.org/events/webinar-how-to-use-techila-with-r In this webinar we learn how to run parallel R jobs using the Techila service. 2016-05-17 13:00:00 UTC 2016-05-17 13:30:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • FGCI ARC tutorial

    20 May 2016

    Elixir node event
    FGCI ARC tutorial https://tess.elixir-europe.org/events/fgci-arc-tutorial The tutorial is intended to help users of local clusters benefit from computing resources available at other FGCI (Finnish Grid and Cloud Infrastructure) sites via the NorduGrid ARC middleware. 2016-05-20 10:00:00 UTC 2016-05-20 15:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Introduction to the Techila HPC system - How to use Techila with R

    31 May 2016

    Elixir node event
    Introduction to the Techila HPC system - How to use Techila with R https://tess.elixir-europe.org/events/introduction-to-the-techila-hpc-system-how-to-use-techila-with-r This course will give a practical introduction on how to use the Techila HPC system with R. 2016-05-31 11:00:00 UTC 2016-05-31 15:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Funetin tekniset päivät ja vuosikokous 2016

    1 - 2 June 2016

    Elixir node event
    Funetin tekniset päivät ja vuosikokous 2016 https://tess.elixir-europe.org/events/funetin-tekniset-paivat-ja-vuosikokous-2016 Nämä Funet-jäsenorganisaatioiden edustajille tarkoitetut tapahtumat järjestetään Hankenilla, Helsingissä. Vuosikokouksen (1.6.. iltapäivä) mahdollisille osallistujille on lähetetty erillinen kutsu. 2016-06-01 09:30:00 UTC 2016-06-02 15:00:00 UTC CSC Hanken, Arkadiankatu 22, Helsinki. Katso Lisätiedot (vaatii sisäänkirjautumista) Hanken, Arkadiankatu 22, Helsinki. Katso Lisätiedot (vaatii sisäänkirjautumista) [] [] [] [] [] []
  • Obtaining a Converged Solution with Abaqus

    2 - 3 June 2016

    Elixir node event
    Obtaining a Converged Solution with Abaqus https://tess.elixir-europe.org/events/obtaining-a-converged-solution-with-abaqus Suomenkielinen kurssi Abaquksen käyttöön jo perehtyneille 2016-06-02 09:00:00 UTC 2016-06-03 17:00:00 UTC CSC Kurssi järjestetään CSC:n tiloissa, Keilaranta 14, Espoo. Kurssi järjestetään CSC:n tiloissa, Keilaranta 14, Espoo. [] [] [] [] [] []
  • OpenFOAM Introduction Course

    7 - 8 June 2016

    Elixir node event
    OpenFOAM Introduction Course https://tess.elixir-europe.org/events/openfoam-introduction-course OpenFOAM introduction course at University of Oulu 2016-06-07 09:00:00 UTC 2016-06-08 16:15:00 UTC CSC Mikroluokka YL124 Mikroluokka YL124 [] [] [] [] [] []
  • INTEGRATE Summer School 2016

    7 - 10 June 2016

    Elixir node event
    INTEGRATE Summer School 2016 https://tess.elixir-europe.org/events/integrate-summer-school-2016 HTS, Medicinal Chemistry, and Cell Biology in the Discovery of New Drugs Active Against Resistant G-negative Bacteria 2016-06-07 10:00:00 UTC 2016-06-10 14:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • ELIXIR-EXCELERATE WP4 F2F Meeting

    8 - 10 June 2016

    Elixir node event
    ELIXIR-EXCELERATE WP4 F2F Meeting https://tess.elixir-europe.org/events/elixir-excelerate-wp4-workshop The ELIXIR-EXCELERATE WP4 F2F meeting in Helsinki will bring together WP4 participants to plan the work distribution and put together the upcoming deliverables. 2016-06-08 12:00:00 UTC 2016-06-10 17:00:00 UTC CSC The event is held mainly at the Hotel Katajanokka in Helsinki. The event is held mainly at the Hotel Katajanokka in Helsinki. [] [] [] [] [] []
  • Finnish OpenFOAM® User Day 2016

    9 June 2016

    Elixir node event
    Finnish OpenFOAM® User Day 2016 https://tess.elixir-europe.org/events/finnish-openfoam-user-day-2016 Annual OpenFOAM user meeting 2016-06-09 09:00:00 UTC 2016-06-09 17:00:00 UTC CSC Lecture room L4 Lecture room L4 [] [] [] [] [] []
  • ELIXIR Workshop Genomics

    7 - 8 November 2016

    Bruxelles, Belgium

    Elixir node event
    ELIXIR Workshop Genomics https://tess.elixir-europe.org/events/elixir-workshop-genomics Goal The fast generation of large amounts of data is fundamentally changing the way how research is done today. Many domains of research are challenged with managing, analyzing and sharing genomics data. This is not just a challenge, it is an oppurtunity to implement this workshop for researchers to learn basic handling of genomics concepts, skills and tools. This workshop is aimed at researchers in the life sciences at all career stage and is designed for learners with little to no prior knowledge of Linux and command line tools or biological networks in Cytoscape. A basic knowledge of programming in R is recommended. ​ Workshop Topics The main ambition or this workshop is that researchers get more familiar with genomics data and handle it in a more efficient way. The following topics will be covered during the workshop.   DAY 1 Introduction to Linux and the command line The first session will introduce you to the use of Linux and the command line for managing and analyzing genomics data.   DAY 2​ Data manipulation in R This session gives an introduction to the use of the R packages plyr and ggplot2 for data manipulation and subsequent graphing. Initiation Cytoscape In this tutorial, you will be introduced to the basics of Cytoscape (how to make a network, change the visualisation parameters such as the layout, ...), and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. 2016-11-07 09:00:00 UTC 2016-11-08 17:00:00 UTC ELIXIR Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise, Bruxelles, Belgium Belgian Science Policy (BELSPO), 231, Avenue Louise Bruxelles Belgium Data visualisation Molecular interactions, pathways and networks Bioinformatics VIB christof.debo@vib.be ELIXIR-BE PhD studentsPost Docs [] [] Cytoscape R-programming Linux
  • Advances in Cell Engineerign, Imaging and Screening

    17 - 18 November 2016

    Leuven, Belgium

    Elixir node event
    Advances in Cell Engineerign, Imaging and Screening https://tess.elixir-europe.org/events/advances-in-cell-engineerign-imaging-and-screening Advances in Cell Engineering, Imaging and Screening A VIB Tools & Technologies Conference EARLY BIRD DEADLINE: OCTOBER 6, 2016 VIB’s Tools and Technologies meetings provide a forum for top academic speakers and scientists from both established and emerging companies to present their latest scientific achievements and exciting technological solutions. The first edition of Advances in Cell Engineering, Imaging and Screening will bring together some of the most highly regarded Academics and Companies in the field. The conference will focus on novel technologies through presentations in several sessions: New imaging and microscopy tools Super-resolution Imaging IPS and cell reprogramming 3D cell culture and organoids Cell manipulation In vivo cell-based assays Cytometry High Content Screening. In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions, the conference dinner @ 'The Faculty Club' and our ‘Meet the Expert’ session! Meet the Expert session with: ‘Prof. Christine Mummery - Leiden University Medical Center, NL’ We offer all junior researchers the opportunity to join our ‘Meet the Expert' session with Prof. Christine Mummery. During an informal round table discussion on the 17th of November, PhD students and postdocs will have the exclusive opportunity to ask any question/advise related to their research and careers. If you are interested in joining the session, then send an e-mail to conferences@vib.be. Seating is very limited so make sure to reserve a spot soon. 2016-11-17 09:00:00 UTC 2016-11-18 18:00:00 UTC VIB Conferences Kinepolis Leuven, Leuven, Belgium Kinepolis Leuven Leuven Vlaanderen Belgium 3000 Proteomics Data visualisation Biology Microbiology Genomics Physiology Systems biology Immunology [] Merck Pall Life Sciences Thermofisher Scientific VyCap Zeiss Alvéole Analisis BD Bioké Hamamatsu JSR Life Sciences Leica Lonza Molecular devices Westbuirg [] meetings_and_conferencesworkshops_and_courses [] []
  • CANCELED: Linux 1 - Introduction to Linux

    23 - 24 January 2017

    Elixir node event
    CANCELED: Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-01-23 09:30:00 UTC 2017-01-24 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • CLC Bio Main Workbench, Leuven

    17 February 2017

    Leuven, Belgium

    Elixir node event
    CLC Bio Main Workbench, Leuven https://tess.elixir-europe.org/events/clc-bio-main-workbench-leuven You will learn to: work with the CLC Main Workbench user interface: create folders, import data, adjust settings... open sequences, view and manipulate annotations align sequences and perform BLAST searches virtually PCR-amplify a gene and insert it into a vector assemble sequences generated by Sanger sequencing into contigs and find conflicts between sequence reads​ 2017-02-17 13:00:00 UTC 2017-02-17 16:00:00 UTC VIB Bioinformatics Core O&N4 room 07.339 Gasthuisberg, Leuven, Belgium O&N4 room 07.339 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • GATK workshop

    20 - 22 February 2017

    Leuven, Belgium

    Elixir node event
    GATK workshop https://tess.elixir-europe.org/events/gatk-workshop This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. You will learn  why each step is essential to the variant discovery process what are the operations performed on the data at each step how to use the GATK tools to get the most accurate and reliable results out of your dataset. • samtools Familiarity with Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non-human data, and we will address some questions regarding adaptations that are needed for analysis of non-human data, but we will not go into much detail on those points​. The training will take 3 days, you can register for each day separately 2017-02-20 09:30:00 UTC 2017-02-22 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Vlaams-Brabant Belgium 3010 Sequence analysis [] [] [] [] [] GATKBroad's Genome Analysis Toolkit
  • Hands-on introduction to Perl programming

    6 - 13 March 2017

    Leuven, Belgium

    Elixir node event
    Hands-on introduction to Perl programming https://tess.elixir-europe.org/events/hands-on-introduction-to-perl-programming Learning the basics of Perl programming: different variables, reading files, writing files, regex. Being able to write small scripts to parse text files Using Perl in windows. Day 2 an example about parsing through a list of files introduction into Perl one-liners subroutines and libraries downloading and using libraries ​​​ 2017-03-06 09:30:00 UTC 2017-03-13 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Revolutionizing Next-Generation Sequencing (2nd edition)

    20 - 21 March 2017

    Antwerpen, Belgium

    Elixir node event
    Revolutionizing Next-Generation Sequencing (2nd edition) https://tess.elixir-europe.org/events/revolutionizing-next-generation-sequencing-2nd-edition Revolutionizing Next-Generation Sequencing (2nd edition) A VIB Tools & Technologies Conference Enabled by better cost-performance curves and novel technology developments, Next-Generation Sequencing technologies keep on pushing the boundaries of our scientific knowledge. The NGS-field is still expanding and to take advantage of new opportunities offered by these technologies in life sciences, VIB Conferences will host the second edition of Revolutionizing Next-Generation Sequencing: Tools and Technologies. After a sold-out 2015 edition, RNGS17 will look at emerging tools and approaches for: Large-scale Sequencing Applications for Current and Emerging Next-Generation Sequencing Platforms Single-Cell Genomics Epigenetics Next-gen Transcriptomics technologies Ultra-long reads and Assembly Computational genomics and data analysis In addition to a great scientific and technology program, the conference will provide ample opportunities to network during the breaks, poster sessions, the conference dinner and our ‘Meet the Expert’ session! You can find more info about the sold out first edition in our event archive. 2017-03-20 08:45:00 UTC 2017-03-21 17:45:00 UTC VIB Conferences Koningin Astridplein 20, 20, Koningin Astridplein, Antwerpen, Belgium Koningin Astridplein 20, 20, Koningin Astridplein Antwerpen Anwerpen Belgium 2018 Epigenomics VIB www.vibconferences.be conferences@vib.be Bluebee Covaris Perkin Elmer SeqLL BD Bioké Diagenode Labcyte Multiplicom Takara Westburg To see all our sponsors please visit www.vibconferences.be PhD'sAcademicsPost-DocsIndustry meetings_and_conferences first_come_first_served Structural genomicsPreclinical and clinical studiesclinical sequencingPopulation geneticsSingle Cell GenomicsDNA-seqSequencingApplied NGSEpigenomicsGenome structureGenome MappingTranscriptomicsData Analysis
  • Prep course for Biopython

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Prep course for Biopython https://tess.elixir-europe.org/events/prep-course-for-biopython This training is an introduction to the Biopython training. This training is intended for people who have no experience with Linux and will teach them all knowledge of Linux command line that is required to successfully follow the Biopython training. If you want to follow  the Biopython training​ and you have no experience with Linux command line, you have to follow this introduction.  2017-03-31 09:30:00 UTC 2017-03-31 17:00:00 UTC VIB Bioinformatics Core O&N4 room 06.239 Gasthuisberg, Leuven, Belgium O&N4 room 06.239 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Metagenomics Data Analysis Workshop @ CSC

    3 - 6 April 2017

    Espoo, Finland

    Elixir node event
    Metagenomics Data Analysis Workshop @ CSC https://tess.elixir-europe.org/events/metagenomics-data-analysis-workshop-csc Description Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis methods and advanced computing approaches. This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced. The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody. META-pipe has been developed by ELIXIR-Norway, and it offers tools for pre-processing (Prinseq, FastQC), assembly (MetaRay/Ray, Mira), taxonomic classification (LC-classifier), gene prediction (Glimmer/MGA), functional analysis (Blast, Priam, InterProScan) and visualization (Metarep). META-pipe analysis jobs use a Spark cluster in the cloud for computation. Chipster offers over 360 analysis tools for different kinds of high-thoughput data. For community analysis of amplicon sequencing data it has tools for pre-processing (Prinseq, Trimmomatic, FastQC, Mothur), taxonomic classification (Mothur), and statistical analysis for marker gene studies (R packages vegan, rich, biodiversityR, pegas and labdsv).  The workshop is organized in collaboration with the ELIXIR EXCELERATE project. Lecturers Nils Willassen (ELIXIR-Norway) Espen Robertsen (ELIXIR-Norway) Erik Hjerde (ELIXIR-Norway) Aleksandr Agafonov (ELIXIR-Norway) Anu Mikkonen (University of Jyväskylä) Jenni Hultman (University of Helsinki) Petri Auvinen (University of Helsinki) Jarno Tuimala (RS training) Maria Lehtivaara (CSC) Kimmo Mattila (CSC) Eija Korpelainen (CSC) Program Please note that there might be still small changes to the schedule. Day 1, Monday 3.4.2017: OPTIONAL MODULE - Community analysis of amplicon sequencing data 9:00-10:45 LECTURES Who's there? Community analysis by amplicon sequencing (Anu Mikkonen) Short demo: Using QIIME in parallel fashion in HPC environments (Kimmo Mattila) 10:45-11:00 Coffee break 11:00-12:30 HANDS-ON SESSION: Using the Chipster software to analyze 16S rRNA data (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen) Introduction to Chipster Data preprocessing with Mothur-based tools and FastQC 12:30-13:30 Lunch 13:30-16:30 HANDS-ON SESSION: Using Chipster continues (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen and Jarno Tuimala) // coffee break included Data preprocessing with Mothur-based tools Taxonomic classification with Mothur-based tools Statistical analysis of marker gene data: Comparing diversity and abundance between groups Visualization Day 2, Tuesday 4.4.2017: Sample preparation, sequencing, quality control, filtering and assembly 9:00-12:30 LECTURES 9:00-10:15 Selecting and preparing samples for metaomics (Anu Mikkonen) Your samples are only as good as your sample preparation routines are, and your results are only as valid as your experimental design is. This talk will discuss, showing plenty of real-life examples, all the things that can go wrong before you even send your DNA samples out for the sequencing. The talk includes lots of practical recommendations on what to do before, or sometimes instead of, metagenomics analysis. 10:15-10:45 Sequencing technologies for metagenomics (Petri Auvinen) 10:45-11:00 Coffee break 11:00-11:30 Metagenomics analysis – an overview (Nils Willassen) 11:30-12:00 META-pipe analysis platform overview (Espen Robertsen, Erik Hjerde) 12:00-12:30 Metagenomics in the cloud (Aleksandr Agafonov) 12:30-13:15 Lunch 13:15-16:30 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Quality control and filtering Assembly Validation Day 3, Wednesday 5.4.2017: Taxonomic and functional analysis 9:00-11:30 LECTURES 9:00-9:30 Taxonomic classification (Nils Willassen) 9:30-10:00 Functional assignment (Espen Robertsen) 10:00-10:15 Coffee break 10:15-10:45 New data resources for marine metagenomics (Nils Willassen) 10:45-11:15 The metagenomics data life-cycle: standards and best practice (TBD) 11:15-12:00 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) Introduction, taxonomic classification 12:00-13:00 Lunch 13:00-16:30 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Taxonomic classification continued Functional assignment Day 4, Thursday 6.4.2017: Comparative metagenomics and other analysis 9:00-12:00 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Visualization of data Comparative metagenomics 12:00-13:00 Lunch 13:00-14:30 LECTURES AND WRAP-UP 13:00-13:35 Arctic metagenomes as a scaffold for understanding metatranscriptomic data (Jenni Hultman) 13:35-14:00 Genome assembly from metagenomic reads (Jenni Hultman) 14:00-14:30 Feedback and wrap up   Language:  EnglishPrice:          Free of charge https://events.prace-ri.eu/event/602/ 2017-04-03 06:00:00 UTC 2017-04-06 14:00:00 UTC ELIXIR EXCELERATE project and PRACE CSC Finland Oy, Espoo, Finland CSC Finland Oy Espoo Finland Metagenomics CSC [] Anyone workshops_and_courses registration_of_interest EXCELERATEMarine Metagenomics
  • Metagenomics data analysis

    3 - 6 April 2017

    Elixir node event
    Metagenomics data analysis https://tess.elixir-europe.org/events/metagenomics-data-analysis This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. It has also an optional module on community analysis of amplicon sequencing data. 2017-04-03 09:00:00 UTC 2017-04-06 17:00:00 UTC The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. [] [] [] workshops_and_courses [] []
  • Electronic Lab Notebook Introduction - Ghent

    18 April 2017

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-638a1f0b-2d27-4f09-b291-72bee6d64baa 2017-04-18 10:00:00 UTC 2017-04-18 12:00:00 UTC VIB Bioinformatics Core PC room V114 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • RNA-Seq prep course

    25 April 2017

    Leuven, Belgium

    Elixir node event
    RNA-Seq prep course https://tess.elixir-europe.org/events/rna-seq-prep-course 2017-04-25 09:30:00 UTC 2017-04-25 16:00:00 UTC VIB Bioinformatics Core Gasthuisberg O&N4 room 07.339, Leuven, Belgium Gasthuisberg O&N4 room 07.339 Leuven Belgium 3000 [] [] [] [] [] []
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