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  • Introduction to DNA-seq NGS Analysis Workshop, November 2017

    20 - 21 November 2017

    Leicester, United Kingdom

    Elixir node event
    Introduction to DNA-seq NGS Analysis Workshop, November 2017 https://tess.elixir-europe.org/events/introduction-to-dna-seq-ngs-analysis-workshop-november-2017 This two day course serves as the first in a larger two-part course in conjunction with our Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop in December 2017, as well as a standalone introduction to DNA-seq. Attendees will receive an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping) and refinement using DNA-seq data. The course will conclude with a basic introduction to variant calling as a lead-in to the December workshop. 2017-11-20 09:00:00 UTC 2017-11-21 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Genetics University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] DNA-seqbioinformatics
  • Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017

    4 - 5 December 2017

    Leicester, United Kingdom

    Elixir node event
    Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017 https://tess.elixir-europe.org/events/exome-variants-copy-number-calling-variant-annotation-and-reporting-workshop-december-2017 This course is aimed at clinicians and wet-lab biologists who are involved in research projects requiring the analysis of exome data, interpretation of sequence variation identified during genomic analyses, and preparing accurate sequence variation descriptions for publication, clinical reporting and data basing. Attendees will receive an introduction to calling variants and copy number alterations from exome sequencing data alignment files, reference sequences, variation nomenclature, variant annotation, variant effect prediction, and clinical and publication reporting recommendations. This course serves as the second in a two-part workshop. The first part, an Introduction to DNA-seq, will be held in November 2017. While attendance of the November workshop is not a pre-requisite, familiarity with the topics it covers will be necessary. 2017-12-04 09:00:00 UTC 2017-12-05 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Exome sequencing University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] []
  • Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling

    14 - 15 May 2018

    Liverpool, United Kingdom

    Elixir node event
    Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling https://tess.elixir-europe.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool
  • Linux bootcamp

    5 - 7 November 2018

    Linux bootcamp https://tess.elixir-europe.org/events/linux-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2018-11-05 13:00:00 UTC 2018-11-07 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Introduction to Statistics with GraphPad Prism

    29 November 2018

    Introduction to Statistics with GraphPad Prism https://tess.elixir-europe.org/events/introduction-to-statistics-with-graphpad-prism For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Course Full. 2018-11-29 09:30:00 UTC 2018-11-29 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • SeqMonk extra

    5 December 2018

    SeqMonk extra https://tess.elixir-europe.org/events/seqmonk-extra For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Course Full. 2018-12-05 09:30:00 UTC 2018-12-05 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Intro to R Bootcamp

    14 - 17 January 2019

    Intro to R Bootcamp https://tess.elixir-europe.org/events/intro-to-r-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-01-14 13:00:00 UTC 2019-01-17 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • NGS Analysis for Biologists Bootcamp

    11 - 14 February 2019

    NGS Analysis for Biologists Bootcamp https://tess.elixir-europe.org/events/ngs-analysis-for-biologists-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-02-11 13:00:00 UTC 2019-02-14 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Methylation Data Analysis

    6 November 2019

    Methylation Data Analysis https://tess.elixir-europe.org/events/creating-scientific-figures For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-11-06 09:30:00 UTC 2019-11-06 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
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