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  • Introduction to DNA-seq NGS Analysis Workshop, November 2017

    20 - 21 November 2017

    Leicester, United Kingdom

    Elixir node event
    Introduction to DNA-seq NGS Analysis Workshop, November 2017 https://tess.elixir-europe.org/events/introduction-to-dna-seq-ngs-analysis-workshop-november-2017 This two day course serves as the first in a larger two-part course in conjunction with our Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop in December 2017, as well as a standalone introduction to DNA-seq. Attendees will receive an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping) and refinement using DNA-seq data. The course will conclude with a basic introduction to variant calling as a lead-in to the December workshop. 2017-11-20 09:00:00 UTC 2017-11-21 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Genetics University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] DNA-seqbioinformatics
  • Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017

    4 - 5 December 2017

    Leicester, United Kingdom

    Elixir node event
    Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017 https://tess.elixir-europe.org/events/exome-variants-copy-number-calling-variant-annotation-and-reporting-workshop-december-2017 This course is aimed at clinicians and wet-lab biologists who are involved in research projects requiring the analysis of exome data, interpretation of sequence variation identified during genomic analyses, and preparing accurate sequence variation descriptions for publication, clinical reporting and data basing. Attendees will receive an introduction to calling variants and copy number alterations from exome sequencing data alignment files, reference sequences, variation nomenclature, variant annotation, variant effect prediction, and clinical and publication reporting recommendations. This course serves as the second in a two-part workshop. The first part, an Introduction to DNA-seq, will be held in November 2017. While attendance of the November workshop is not a pre-requisite, familiarity with the topics it covers will be necessary. 2017-12-04 09:00:00 UTC 2017-12-05 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Exome sequencing University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] []
  • Linux bootcamp

    5 - 7 November 2018

    Linux bootcamp https://tess.elixir-europe.org/events/linux-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2018-11-05 13:00:00 UTC 2018-11-07 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Introduction to Statistics with GraphPad Prism

    29 November 2018

    Introduction to Statistics with GraphPad Prism https://tess.elixir-europe.org/events/introduction-to-statistics-with-graphpad-prism For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Course Full. 2018-11-29 09:30:00 UTC 2018-11-29 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • SeqMonk extra

    5 December 2018

    SeqMonk extra https://tess.elixir-europe.org/events/seqmonk-extra For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Course Full. 2018-12-05 09:30:00 UTC 2018-12-05 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • Intro to R Bootcamp

    14 - 17 January 2019

    Intro to R Bootcamp https://tess.elixir-europe.org/events/intro-to-r-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-01-14 13:00:00 UTC 2019-01-17 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • ELIXIR Data Carpentry - Ljubljana

    29 - 30 January 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Data Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-data-carpentry-ljubljana **ELIXIR Data Carpentry for Genomics - Ljubljana** **29-30 Jan 2019, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia)** **ELIXIR Data Carpentry for Genomics** is a course intended for all those who would like to learn more about the basics of data processing and data management in the field of genomics. The course will be in English. **The limit of participants is 20.** If there are more applicants than available places, the participants will be selected based on their institutional and geographic background, while also taking into account the time of their registration. The course is free of charge. You can find more info about the course on the [**ELIXIR-SI eLearning Platform (EeLP)**](https://elixir.mf.uni-lj.si/course/view.php?id=44). The course will take place in the computer classroom at the **Institute of Biostatistics and Medical Informatics (IBMI)**, Faculty of Medicine, Vrazov trg 2, Ljubljana. Sessions will be intensive and hands-on, and taught by experienced data carpentry instructors. Instructors will be **Vasilis Lenis (University of Plymouth, UK)** and **Živa Ramšak (ELIXIR Slovenia; National Institute of Biology Ljubljana)**. The course is recommended for anyone who would like to learn more about how to process and manage big scale genomic data. **Program topics:** * Introduction - Presentation of ELIXIR Slovenia and ELIXIR-SI eLearning Platform * Project management in genomics and introduction to cloud computing * Introduction to Linux/Unix command line * Data wrangling and processing for genomics The course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR Hub** and **Data & Software Carpentry**. 2019-01-29 08:15:00 UTC 2019-01-30 12:30:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia Ljubljana Slovenia SI-1000 Genomics Data management Computer science University of Ljubljana, Faculty of Medicine ELIXIR EXCELERATE Life Science ResearchersPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearninggenomicsData carpentry
  • NGS Analysis for Biologists Bootcamp

    11 - 14 February 2019

    NGS Analysis for Biologists Bootcamp https://tess.elixir-europe.org/events/ngs-analysis-for-biologists-bootcamp For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-02-11 13:00:00 UTC 2019-02-14 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-software-carpentry-ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data & Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](https://elixir.mf.uni-lj.si/course/view.php?id=46)**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • Metadynminer webinar

    31 May 2019

    Elixir node event
    Metadynminer webinar https://tess.elixir-europe.org/events/metadynminer-webinar **Metadynminer** is an R package for analysis and visualization of metadynamics results. It can load results from Plumed, a popular open-source metadynamics package. We will show basic and advanced options how to use Metadynminer and present plans for a future version. **Agenda:** - 20 min presentation - 10 min discussion 2019-05-31 15:00:00 UTC 2019-05-31 15:30:00 UTC UCT Prague Statistics and probability UCT Prague Mr. Vojtech Spiwok, UCT Prague (Vojtech.Spiwok@vscht.cz) ELIXIR-CZ bioinformaticiansStatistics workshops_and_courses first_come_first_served metadynamics R-programmingWebinar
  • Genome assembly and annotation course 5

    1 - 5 July 2019

    Milan, Italy

    Elixir node event
    Genome assembly and annotation course 5 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-5 A **genome assembly and annotation course** will take place on **July 1-5, 2019** in **Milan, Italy**, hosted by the Italian ELIXIR Node in cooperation with other ELIXIR nodes that are involved in the ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and annotation experts in Europe will be teaching at the course. The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue with a step-by-step description of all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using Unix/Linux command line. After the course, the participants will have knowledge of commonly used assembly practices and tools. They will be able to run assembly and annotation projects on their own. **Prerequisites:** - **Working knowledge of Unix/Linux command line** - **As part of the course agenda, course participants will prepare a short presentation about their own projects.** Optionally, they may also bring their own data. **Instructions how to register for the course are available on the [ELIXIR-SI eLearning Platform (EELP)](https://elixir.mf.uni-lj.si/course/view.php?id=45).** You will be able to access the course after you register and your registration is approved by the course organizers. 2019-07-01 09:00:00 UTC 2019-07-05 17:00:00 UTC ELIXIR Italy University of Milano-Bicocca, Building U7, Lab 715, Milan, Italy University of Milano-Bicocca, Building U7, Lab 715 Milan Città Metropolitana di Milano Italy Genomics University of Milano-Bicocca, Italy General questions: gianluca.dellavedova@unimib.it Questions about the course agenda: henrik.lantz@nbis.se National Research Council of ItalyINRANBIS - National Bioinformatics Infrastructure SwedenELIXIR EXCELERATE life scientistsResearchersPhD students 24 workshops_and_courses registration_of_interest Genomics AssemblyTrainingeLearningEeLP
  • Methylation Data Analysis

    6 November 2019

    Methylation Data Analysis https://tess.elixir-europe.org/events/creating-scientific-figures For more details please see https://www.bioinformatics.babraham.ac.uk/cgi-bin/public/course_dates.cgi. Course status: Spaces Available. 2019-11-06 09:30:00 UTC 2019-11-06 17:30:00 UTC Babraham Campus Babraham Campus CB22 3AT [] mailto:babraham.bioinformatics@babraham.ac.uk [] [] [] [] []
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