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  • EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists

    14 - 19 February 2016

    Cambridge, United Kingdom

    Elixir node event
    EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists https://tess.elixir-europe.org/events/embo-practical-course-on-metabolomics-bioinformatics-for-life-scientists This course will provide an overview of key issues that affect metabolomics studies, handling dataset and procedures for the analysis of metabolomics data using bioinformatics tools. 2016-02-14 09:00:00 UTC 2016-02-19 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Maria Bacadare Goitia [] [] workshops_and_courses [] HDRUK
  • Introduction to Integrative Omics

    7 - 10 March 2016

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Integrative Omics https://tess.elixir-europe.org/events/introduction-to-integrative-omics This course will provide participants with an introduction to methods for working with a number of ‘omics’ data types in a more integrated manner, with an emphasis on data visualisation. 2016-03-07 09:00:00 UTC 2016-03-10 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] [] workshops_and_courses [] HDRUK
  • Advanced RNA-Seq and ChiP-Seq Data Analysis 2016

    18 - 21 April 2016

    Cambridge, United Kingdom

    Elixir node event
    Advanced RNA-Seq and ChiP-Seq Data Analysis 2016 https://tess.elixir-europe.org/events/advanced-rna-seq-and-chip-seq-data-analysis-2016 The aim of this course is to familiarise the participants with advanced data analysis methodologies and provide hands-on training on the latest analytical approaches. 2016-04-18 09:00:00 UTC 2016-04-21 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] workshops_and_courses [] HDRUK
  • Bioinformatics for Principal Investigators

    7 - 9 June 2016

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Principal Investigators https://tess.elixir-europe.org/events/bioinformatics-for-principal-investigators This course will provide a high-level overview of the latest bioinformatics resources and methods, highlighting how bioinformatics can impact research and providing guidance on building bioinformatics into research strategy. 2016-06-07 09:00:00 UTC 2016-06-09 12:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] workshops_and_courses [] HDRUK
  • Summer School in Bioinformatics

    13 - 17 June 2016

    Cambridge, United Kingdom

    Elixir node event
    Summer School in Bioinformatics https://tess.elixir-europe.org/events/summer-school-in-bioinformatics-0ad14a00-b558-4f5c-a023-0a2e2a101c4b This jointly run summer school will provide an introduction to the use of bioinformatics in biological research using publicly available data resources and tools. 2016-06-13 09:00:00 UTC 2016-06-17 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Lucy Criddle [] [] workshops_and_courses [] HDRUK
  • Cancer Genomics

    27 June - 1 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-0eb1ba95-3543-467c-af1e-846cdbe704a4 This course will focus on the analysis of data from genomic studies of Cancer. 2016-06-27 09:00:00 UTC 2016-07-01 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] workshops_and_courses [] HDRUK
  • In Silico Systems Biology

    3 - 8 July 2016

    Cambridge, United Kingdom

    Elixir node event
    In Silico Systems Biology https://tess.elixir-europe.org/events/in-silico-systems-biology-ad07bbff-d9eb-4454-a3ad-9ef54ffef89f This course will provide participants with an overview of modelling approaches and an introduction to network analysis. 2016-07-03 09:00:00 UTC 2016-07-08 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Yvonne Thornton [] [] workshops_and_courses [] HDRUK
  • Analysis of High-Throughput Sequencing Data

    5 - 10 September 2016

    Hinxton

    Elixir node event
    Analysis of High-Throughput Sequencing Data https://tess.elixir-europe.org/events/analysis-of-high-throughput-sequencing-data The aim of this course is to familiarise the participants with advanced data analysis methodologies and provide hands-on training on the latest analytical approaches. 2016-09-05 09:00:00 UTC 2016-09-10 12:00:00 UTC Cathy Hemmings, Hinxton Cathy Hemmings Hinxton [] Cathy Hemmings [] [] workshops_and_courses [] HDRUK
  • Introduction to Next Generation Sequencing (October)

    3 - 6 October 2016

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Next Generation Sequencing (October) https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing This course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data. 2016-10-03 09:00:00 UTC 2016-10-06 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] [] workshops_and_courses [] HDRUK
  • Genome assembly and annotation course

    12 - 14 October 2016

    Prague, Czechia

    Elixir node event
    Genome assembly and annotation course https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course ELIXIR Genome assembly and annotation course, Oct 12-14 2016 at the IOCB, Prague, Czech Republic 2016-10-12 09:00:00 UTC 2016-10-14 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Genomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Unix/Linux Tutorial for Beginners

    17 - 19 October 2016

    Elixir node event
    Unix/Linux Tutorial for Beginners https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-b1fe99bb-880f-43eb-8d81-7366ba9a5d0c ELIXIR tutorial "Unix/Linux Tutorial for Beginners", Oct 17-19, 2016 2016-10-17 09:00:00 UTC 2016-10-19 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Metagenomics Bioinformatics

    18 - 20 October 2016

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics Bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including both marker gene and whole gene shotgun (WGS) approaches. Delegates will gain hands-on experience using a range of data resources and tools, interspersed with lectures. Additionally, there will be the opportunity to discuss the challenges facing researchers in the field. 2016-10-18 09:00:00 UTC 2016-10-20 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] workshops_and_courses [] HDRUK
  • Train-the-Trainer course

    28 - 30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Train-the-Trainer course https://tess.elixir-europe.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Linux Command line course

    30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Linux Command line course https://tess.elixir-europe.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Proteomics Bioinformatics

    4 - 9 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Proteomics Bioinformatics https://tess.elixir-europe.org/events/proteomics-bioinformatics Participants will be able to go from MS spectra, to identifying peptides and finally to lists of protein identifiers that can be analysed further using a wide range of resources. 2016-12-04 09:00:00 UTC 2016-12-09 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Yvonne Thornton [] [] workshops_and_courses [] HDRUK
  • RNA-seq data analysis using Chipster

    31 January 2017

    Elixir node event
    RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-chipster ELIXIR tutorial “RNA-seq data analysis using Chipster”, Jan 31, 2017 2017-01-31 09:00:00 UTC 2017-01-31 17:00:00 UTC IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI Transcriptomics Genomics IOCB PragueUniversity of Ljubljana, Faculty of Medicine [] Researchers workshops_and_courses registration_of_interest transcriptomics RNA-SeqeLearningEeLP
  • How to get the most out of your microarray experiment. A Webinar

    14 February 2017

    Elixir node event
    How to get the most out of your microarray experiment. A Webinar https://tess.elixir-europe.org/events/how-to-get-the-most-out-of-your-microarray-experiment-a-webinar ELIXIR webinar "How to get the most out of your microarray experiment", Feb 14, 2017 2017-02-14 12:30:00 UTC 2017-02-14 15:00:00 UTC NBIS, SciLifeLab Molecular biology NBISSciLifeLab [] Researchers workshops_and_courses registration_of_interest life sciencesmicroarrayseLearningEeLP
  • PDA17 Proteomics Data Analysis

    6 March 2017

    Oeiras, Portugal

    Elixir node event
    PDA17 Proteomics Data Analysis https://tess.elixir-europe.org/events/proteomics-data-analysis    IMPORTANT DATES for this Course   Deadline for applications: Feb 25th 2017 (New)   Course date: March 6th - March 10th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering both protein identification and quantification. The core focus will be on shotgun proteomics data. Quantification through isobaric labels (iTRAQ, TMT) and label-free precursor peptide (MS1) ion intensities will also be introduced. The course will rely exclusively on free and user-friendly software, all of which can be directly applied in your lab upon your return from the course. An introduction to available online resources and repositories will also be given. Here you will see how to link the results from proteomic experiments with external data to conduct pathway, gene ontology and interaction analyses. In the course, you will also learn how to submit data to the ProteomeXchange online repositories, and how to browse and reprocess publicly available data from these repositories. The course will provide a solid basis for beginners, but also new perspectives to those already familiar with standard data interpretation procedures in proteomics. Note: this is a highly interactive course. It requires that the participants interact with each other and with the course instructors, in order to reach the learning outcomes in full. Course Pre-requisites The participants should have a basic knowledge about mass spectrometry based proteomics. Experience in analyzing proteomics data is an advantage, but not mandatory. The course does not require advanced computer skills. 2017-03-06 09:30:00 UTC 2017-03-06 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Mass spectrometry Proteomics Instituto Gulbenkian de Ciência bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • PGDH17 Population Genetics and Demographic History: model-based approaches

    13 March 2017

    Oeiras, Portugal

    Elixir node event
    PGDH17 Population Genetics and Demographic History: model-based approaches https://tess.elixir-europe.org/events/pgdh17-population-genetics-and-demographic-history    IMPORTANT DATES for this Course    Deadline for applications: Mar 6th 2017 (New)    Course date: March 13th - March 17th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Genetic and genomic data are increasingly used by ecologists and evolutionary biologists in general. It has thus become important for many biologists with different levels of experience to produce and analyse genetic (and genomic) data. In this course we will take a practical approach to the analysis of genetic and genomic data, but we will also provide some of the theoretical background required to understand the outputs of the software used. This course will be organised so as to mix lectures where important notions are introduced with practicals where freely available software will be used. While this will not be the focus of the course, we will also introduce and discuss genealogical (coalescent-based) simulation methods and those based on forward-in-time simulations. Altogether this will allow to discuss the potentialities and limitations of the tools available to the community. In this five-day course we will introduce the main concepts that underlie many of the models that are frequently used in population genetics. We will focus on the importance of demographic history (e.g. effective sizes and migration patterns) in shaping genetic data. We will go through the basic notions that are central to population genetics, insisting particularly on the statistics used to measure genetic diversity and population differentiation. The course will also cover a short introduction to coalescent theory, Bayesian inference in population genetics and data simulation. We will also introduce two methods that have been recently developed to analyse genomic data. The PSMC of Li and Durbin reconstructs the demographic history of a species or population with the genome of a single individual. The Rehh package is an R implementation of the Extended Haplotype Homozygosity (EHH) test for selective sweeps and looks for signals of selection based on the analysis of genomic regions. Most theory will be put into practice in practical sessions, analyzing real and/or simulated datasets. In these sessions, we will look at measures of genetic diversity and differentiation and use methods to infer demographic history. We will learn how to perform coalescent simulations of genetic/genomic data (using SPAms and ms). We will also show how to simulated data for PSMC analyses. This will allow users to compare the PSMC obtained with real data to those obtained for the models they used. We will also look at how habitat fragmentation can be simulated using an in-house program. Some exercises will make use of R scripts (R being a freely available statistical program). Basic R knowledge is a pre-requisite but we will provide a short introduction to R. The R statistical package is a very powerful tool to analyse data outputs from many population genetics software, and can also be used to simulate genetic data under simple demographic scenarios. Course Pre-requisites Basic molecular population genetics and molecular ecology. Basic R knowldedge. Basic knowledge of genomic data. 2017-03-13 09:30:00 UTC 2017-03-13 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Genomics Population genetics [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • Unix/Linux Tutorial for Beginners 2

    27 - 29 March 2017

    Elixir node event
    Unix/Linux Tutorial for Beginners 2 https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-2 ELIXIR tutorial "Unix/Linux Tutorial for Beginners 2", Mar 27-29, 2017 2017-03-27 09:00:00 UTC 2017-03-29 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Introduction to Next Generation Sequencing Bioinformatics Workshop

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Introduction to Next Generation Sequencing Bioinformatics Workshop https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-bioinformatics-workshop Introduction to Next Generation Sequencing Bioinformatics Workshop MARCH31, 2017 (08:30-17:00) Lokaal H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Preliminary Program 08:30 – 9:00 - Welcome coffee 09:00 – 09:05 – Welcome by Prof. Joris Vermeesch 09:05 - 10:00 - Overview of NGS sequencing methods and technologies Session lead: Jeroen Van Houdt - Genomics Core Leuven 10:00 - 11:00 – Understanding NGS raw data: Fastq format, quality checking, trimming, adapter clipping Session lead: Koen Herten - Genomics Core Leuven 11:00 – 11:30 – Coffee break 11:30 – 12:30 – Read mapping and alignment: SAM format, alignment tools, visualization on IGV Session lead: Koen Herten - Genomics Core Leuven 12:30 – 13:30 – Lunch 13:30 – 15:00 – Variant calling: tools, GATK, quality scores, baserecalibration, VCF files Session lead: Erika Souche & Luc Dehaspe - Genomics Core Leuven 15:00 – 15:30 – Coffee break 15:30 – 17:00 – RNA-Seq data: Differential expression principles, counting, DE table interpretation Session lead: Alvaro Cortés Calabuig – Genomics Core Leuven Places are limited and are assigned on a first-come first-serve policy. The workshop is free of charge for students and members of academic institutions in Belgium. The cost for members of non-academic institutions (VIB, IMEC, pharma, etc.) is 100€. Sandwiches will be offered at lunch time. Late cancellations are subject to an administrative fee of 50€. Participants are required to bring their own laptops. For inquiries, please send an email to alvaro.cortes@uzleuven.be. 2017-03-31 08:30:00 UTC 2017-03-31 17:00:00 UTC Genomics Core KU Leuven/UZ Leuven Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven, Leuven, Belgium Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Leuven Vlaams-Brabant Belgium 3000 High-throughput sequencing KU Leuven alvaro.cortes@uzleuven.be [] Post-DocsPhD 25 workshops_and_courses first_come_first_served []
  • Introduction to Next Generation Sequencing (April)

    3 - 6 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Next Generation Sequencing (April) https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-april-2017 This course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data. 2017-04-03 12:00:00 UTC 2017-04-06 16:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] Bioinformaticians and wet-lab biologists who can program 30 workshops_and_courses registration_of_interest HDRUK
  • Ensembl Browser Workshop- EMBL-EBI 4th April 2017

    4 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Ensembl Browser Workshop- EMBL-EBI 4th April 2017 https://tess.elixir-europe.org/events/ensembl-browser-workshop-embl-ebi-4th-april-2017 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2017-04-04 09:30:00 UTC 2017-04-04 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Helen Sparrow [] Wet-lab Researchers 30 workshops_and_courses registration_of_interest HDRUK
  • ELIXIR-EXCELERATE HPC Train-the-Researcher course

    6 - 7 April 2017

    Málaga, Spain

    Elixir node event
    ELIXIR-EXCELERATE HPC Train-the-Researcher course https://tess.elixir-europe.org/events/elixir-excelerate-hpc-train-the-researcher-course-3af9b3c7-94a5-46ae-a68c-1c73b87049ab ELIXIR-EXCELERATE HPC Train-the-Researcher course, Apr 6-7, 2017, Malaga, Spain 2017-04-06 09:00:00 UTC 2017-04-07 17:00:00 UTC Escuela Técnica Superior de Ingeniería Informática Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur, Málaga, Spain Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur Málaga Málaga Spain Computational biology Computer science Escuela Técnica Superior de Ingeniería Informática, University of Malaga [] life scientistsResearchers workshops_and_courses registration_of_interest high-performance computingtrainingeLearningEeLP
  • Multi-scale study of 3D Chromatin structure

    10 - 11 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Multi-scale study of 3D Chromatin structure https://tess.elixir-europe.org/events/multi-scale-study-of-3d-chromatin-structure This workshop will introduce delegates to a Virtual Research Environment (VRE), created by the Multi-scale complex Genomics project (MuG), to facilitate the analysis and interpretation of the genome. 2017-04-10 09:30:00 UTC 2017-04-11 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] Experimental ResearchersBioinformaticians 30 workshops_and_courses registration_of_interest HDRUK
  • ADER17 - Analysis of Differential Expression with RNAseq

    17 April 2017

    Oeiras, Portugal

    Elixir node event
    ADER17 - Analysis of Differential Expression with RNAseq https://tess.elixir-europe.org/events/ader17-analysis-of-differential-expression-with-rnaseq    IMPORTANT DATES for this Course   Deadline for applications: April 10th 2017   Course dates: April 17th - April 20th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application, until we reach 20 participants. Course description Overview High-throughput technologies allow us to detect transcripts present in a cell or tissue. This course covers practical aspects of the analysis of differential gene expression by RNAseq. Participants will be presented with real world examples and work with them in the training room, covering all the steps of RNAseq analysis, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial steps of secondary analysis, such as functional enrichment of the obtained gene lists. Target Audiences Life Scientists who want to be able to use NGS data to evaluate gene expression (RNAseq). Computational researchers that wish to get acquainted with the concepts and methodologies used in RNAseq are also welcome. Participants are encouraged to bring their own data and will have the opportunity to apply the concepts learned in the course. Pre-requisites Familiarity with elementary statistics and a few basics of scripting in R. Please have a look at the following resources and gauge your ability to use R in statitics at the basic level: Introduction to Data Science with R Videos from Coursera's four week course in R Statistics at Square One - BMJ Basic Unix command line skills, such as being able to navigate in a directory tree and copy files. See, for example, "Session 1" of the Software Carpentry training for a Unix introduction (Shell-novice material from the Software Carpentry Foundation). 2017-04-17 07:30:00 UTC 2017-04-17 07:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 1000-029 Transcriptomics RNA-Seq [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • Advanced RNA-Seq and ChiP-Seq Data Analysis

    24 - 27 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Advanced RNA-Seq and ChiP-Seq Data Analysis https://tess.elixir-europe.org/events/advanced-rna-seq-and-chip-seq-data-analysis-a20a0739-63da-4145-ba49-cd2e4f8a38fa The aim of this course is to familiarise the participants with advanced data analysis methodologies and provide hands-on training on the latest analytical approaches. Lectures will give insight into how biological knowledge can be generated from RNA-seq and ChIP-seq experiments and illustrate different ways of analyzing such data Practicals will consist of computer exercises that will enable the participants to apply statistical methods to the analysis of RNA-seq and ChIP-seq data under the guidance of the lecturers and teaching assistants. 2017-04-24 12:00:00 UTC 2017-04-27 16:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] PhD StudentsPostdoctoral Researchers 30 workshops_and_courses registration_of_interest HDRUK
  • Ensembl Browser Workshop – CRUK Cambridge 2nd May 2017

    2 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Ensembl Browser Workshop – CRUK Cambridge 2nd May 2017 https://tess.elixir-europe.org/events/ensembl-browser-workshop-cruk-cambridge-2nd-may-2017 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2017-05-02 09:30:00 UTC 2017-05-02 17:30:00 UTC Cancer Research UK Cambridge Institute, Cambridge, United Kingdom Cancer Research UK Cambridge Institute Cambridge United Kingdom CB2 0RE [] Gabriella Rustici [] Wet-lab Researchers 30 workshops_and_courses registration_of_interest HDRUK
  • Protein family resources

    3 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Protein family resources https://tess.elixir-europe.org/events/protein-family-resources This workshop will give an introduction to the protein classification and annotation resources provided by EMBL-EBI, with hands-on practical experience of searching and accessing appropriate data and information. 2017-05-03 09:00:00 UTC 2017-05-03 17:15:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD EMBL-EBI [] [] 30 workshops_and_courses registration_of_interest []
  • Computational Molecular Evolution

    8 - 19 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Computational Molecular Evolution https://tess.elixir-europe.org/events/computational-molecular-evolution-85ac2837-cedd-4ca4-851c-084a82dde4ef This hands-on computational course aims to provide early-career stage researchers with the theoretical knowledge and practical skills to carry out molecular evolutionary analyses on sequence data. 2017-05-08 12:00:00 UTC 2017-05-19 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 2 Cambridge United Kingdom CB10 1SD [] Yvonne Thornton [] PhD StudentsPostdoctoral Researchers 30 workshops_and_courses registration_of_interest HDRUK
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