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  • Genome assembly and annotation course

    12 - 14 October 2016

    Prague, Czechia

    Elixir node event
    Genome assembly and annotation course https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course ELIXIR Genome assembly and annotation course, Oct 12-14 2016 at the IOCB, Prague, Czech Republic 2016-10-12 09:00:00 UTC 2016-10-14 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Genomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Unix/Linux Tutorial for Beginners

    17 - 19 October 2016

    Elixir node event
    Unix/Linux Tutorial for Beginners https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-b1fe99bb-880f-43eb-8d81-7366ba9a5d0c ELIXIR tutorial "Unix/Linux Tutorial for Beginners", Oct 17-19, 2016 2016-10-17 09:00:00 UTC 2016-10-19 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Train-the-Trainer course

    28 - 30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Train-the-Trainer course https://tess.elixir-europe.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Linux Command line course

    30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Linux Command line course https://tess.elixir-europe.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • CANCELED: Linux 1 - Introduction to Linux

    23 - 24 January 2017

    Elixir node event
    CANCELED: Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-01-23 09:30:00 UTC 2017-01-24 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • RNA-seq data analysis using Chipster

    31 January 2017

    Elixir node event
    RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-chipster ELIXIR tutorial “RNA-seq data analysis using Chipster”, Jan 31, 2017 2017-01-31 09:00:00 UTC 2017-01-31 17:00:00 UTC IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI Transcriptomics Genomics IOCB PragueUniversity of Ljubljana, Faculty of Medicine [] Researchers workshops_and_courses registration_of_interest transcriptomics RNA-SeqeLearningEeLP
  • How to get the most out of your microarray experiment. A Webinar

    14 February 2017

    Elixir node event
    How to get the most out of your microarray experiment. A Webinar https://tess.elixir-europe.org/events/how-to-get-the-most-out-of-your-microarray-experiment-a-webinar ELIXIR webinar "How to get the most out of your microarray experiment", Feb 14, 2017 2017-02-14 12:30:00 UTC 2017-02-14 15:00:00 UTC NBIS, SciLifeLab Molecular biology NBISSciLifeLab [] Researchers workshops_and_courses registration_of_interest life sciencesmicroarrayseLearningEeLP
  • PDA17 Proteomics Data Analysis

    6 March 2017

    Oeiras, Portugal

    Elixir node event
    PDA17 Proteomics Data Analysis https://tess.elixir-europe.org/events/proteomics-data-analysis    IMPORTANT DATES for this Course   Deadline for applications: Feb 25th 2017 (New)   Course date: March 6th - March 10th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering both protein identification and quantification. The core focus will be on shotgun proteomics data. Quantification through isobaric labels (iTRAQ, TMT) and label-free precursor peptide (MS1) ion intensities will also be introduced. The course will rely exclusively on free and user-friendly software, all of which can be directly applied in your lab upon your return from the course. An introduction to available online resources and repositories will also be given. Here you will see how to link the results from proteomic experiments with external data to conduct pathway, gene ontology and interaction analyses. In the course, you will also learn how to submit data to the ProteomeXchange online repositories, and how to browse and reprocess publicly available data from these repositories. The course will provide a solid basis for beginners, but also new perspectives to those already familiar with standard data interpretation procedures in proteomics. Note: this is a highly interactive course. It requires that the participants interact with each other and with the course instructors, in order to reach the learning outcomes in full. Course Pre-requisites The participants should have a basic knowledge about mass spectrometry based proteomics. Experience in analyzing proteomics data is an advantage, but not mandatory. The course does not require advanced computer skills. 2017-03-06 09:30:00 UTC 2017-03-06 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Mass spectrometry Proteomics Instituto Gulbenkian de Ciência bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • PGDH17 Population Genetics and Demographic History: model-based approaches

    13 March 2017

    Oeiras, Portugal

    Elixir node event
    PGDH17 Population Genetics and Demographic History: model-based approaches https://tess.elixir-europe.org/events/pgdh17-population-genetics-and-demographic-history    IMPORTANT DATES for this Course    Deadline for applications: Mar 6th 2017 (New)    Course date: March 13th - March 17th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. Course description Genetic and genomic data are increasingly used by ecologists and evolutionary biologists in general. It has thus become important for many biologists with different levels of experience to produce and analyse genetic (and genomic) data. In this course we will take a practical approach to the analysis of genetic and genomic data, but we will also provide some of the theoretical background required to understand the outputs of the software used. This course will be organised so as to mix lectures where important notions are introduced with practicals where freely available software will be used. While this will not be the focus of the course, we will also introduce and discuss genealogical (coalescent-based) simulation methods and those based on forward-in-time simulations. Altogether this will allow to discuss the potentialities and limitations of the tools available to the community. In this five-day course we will introduce the main concepts that underlie many of the models that are frequently used in population genetics. We will focus on the importance of demographic history (e.g. effective sizes and migration patterns) in shaping genetic data. We will go through the basic notions that are central to population genetics, insisting particularly on the statistics used to measure genetic diversity and population differentiation. The course will also cover a short introduction to coalescent theory, Bayesian inference in population genetics and data simulation. We will also introduce two methods that have been recently developed to analyse genomic data. The PSMC of Li and Durbin reconstructs the demographic history of a species or population with the genome of a single individual. The Rehh package is an R implementation of the Extended Haplotype Homozygosity (EHH) test for selective sweeps and looks for signals of selection based on the analysis of genomic regions. Most theory will be put into practice in practical sessions, analyzing real and/or simulated datasets. In these sessions, we will look at measures of genetic diversity and differentiation and use methods to infer demographic history. We will learn how to perform coalescent simulations of genetic/genomic data (using SPAms and ms). We will also show how to simulated data for PSMC analyses. This will allow users to compare the PSMC obtained with real data to those obtained for the models they used. We will also look at how habitat fragmentation can be simulated using an in-house program. Some exercises will make use of R scripts (R being a freely available statistical program). Basic R knowledge is a pre-requisite but we will provide a short introduction to R. The R statistical package is a very powerful tool to analyse data outputs from many population genetics software, and can also be used to simulate genetic data under simple demographic scenarios. Course Pre-requisites Basic molecular population genetics and molecular ecology. Basic R knowldedge. Basic knowledge of genomic data. 2017-03-13 09:30:00 UTC 2017-03-13 09:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2781-901 Genomics Population genetics [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • Unix/Linux Tutorial for Beginners 2

    27 - 29 March 2017

    Elixir node event
    Unix/Linux Tutorial for Beginners 2 https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-2 ELIXIR tutorial "Unix/Linux Tutorial for Beginners 2", Mar 27-29, 2017 2017-03-27 09:00:00 UTC 2017-03-29 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Introduction to Next Generation Sequencing Bioinformatics Workshop

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Introduction to Next Generation Sequencing Bioinformatics Workshop https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-bioinformatics-workshop Introduction to Next Generation Sequencing Bioinformatics Workshop MARCH31, 2017 (08:30-17:00) Lokaal H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Preliminary Program 08:30 – 9:00 - Welcome coffee 09:00 – 09:05 – Welcome by Prof. Joris Vermeesch 09:05 - 10:00 - Overview of NGS sequencing methods and technologies Session lead: Jeroen Van Houdt - Genomics Core Leuven 10:00 - 11:00 – Understanding NGS raw data: Fastq format, quality checking, trimming, adapter clipping Session lead: Koen Herten - Genomics Core Leuven 11:00 – 11:30 – Coffee break 11:30 – 12:30 – Read mapping and alignment: SAM format, alignment tools, visualization on IGV Session lead: Koen Herten - Genomics Core Leuven 12:30 – 13:30 – Lunch 13:30 – 15:00 – Variant calling: tools, GATK, quality scores, baserecalibration, VCF files Session lead: Erika Souche & Luc Dehaspe - Genomics Core Leuven 15:00 – 15:30 – Coffee break 15:30 – 17:00 – RNA-Seq data: Differential expression principles, counting, DE table interpretation Session lead: Alvaro Cortés Calabuig – Genomics Core Leuven Places are limited and are assigned on a first-come first-serve policy. The workshop is free of charge for students and members of academic institutions in Belgium. The cost for members of non-academic institutions (VIB, IMEC, pharma, etc.) is 100€. Sandwiches will be offered at lunch time. Late cancellations are subject to an administrative fee of 50€. Participants are required to bring their own laptops. For inquiries, please send an email to alvaro.cortes@uzleuven.be. 2017-03-31 08:30:00 UTC 2017-03-31 17:00:00 UTC Genomics Core KU Leuven/UZ Leuven Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven, Leuven, Belgium Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Leuven Vlaams-Brabant Belgium 3000 High-throughput sequencing KU Leuven alvaro.cortes@uzleuven.be [] Post-DocsPhD 25 workshops_and_courses first_come_first_served []
  • Metagenomics Data Analysis Workshop @ CSC

    3 - 6 April 2017

    Espoo, Finland

    Elixir node event
    Metagenomics Data Analysis Workshop @ CSC https://tess.elixir-europe.org/events/metagenomics-data-analysis-workshop-csc Description Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis methods and advanced computing approaches. This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced. The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody. META-pipe has been developed by ELIXIR-Norway, and it offers tools for pre-processing (Prinseq, FastQC), assembly (MetaRay/Ray, Mira), taxonomic classification (LC-classifier), gene prediction (Glimmer/MGA), functional analysis (Blast, Priam, InterProScan) and visualization (Metarep). META-pipe analysis jobs use a Spark cluster in the cloud for computation. Chipster offers over 360 analysis tools for different kinds of high-thoughput data. For community analysis of amplicon sequencing data it has tools for pre-processing (Prinseq, Trimmomatic, FastQC, Mothur), taxonomic classification (Mothur), and statistical analysis for marker gene studies (R packages vegan, rich, biodiversityR, pegas and labdsv).  The workshop is organized in collaboration with the ELIXIR EXCELERATE project. Lecturers Nils Willassen (ELIXIR-Norway) Espen Robertsen (ELIXIR-Norway) Erik Hjerde (ELIXIR-Norway) Aleksandr Agafonov (ELIXIR-Norway) Anu Mikkonen (University of Jyväskylä) Jenni Hultman (University of Helsinki) Petri Auvinen (University of Helsinki) Jarno Tuimala (RS training) Maria Lehtivaara (CSC) Kimmo Mattila (CSC) Eija Korpelainen (CSC) Program Please note that there might be still small changes to the schedule. Day 1, Monday 3.4.2017: OPTIONAL MODULE - Community analysis of amplicon sequencing data 9:00-10:45 LECTURES Who's there? Community analysis by amplicon sequencing (Anu Mikkonen) Short demo: Using QIIME in parallel fashion in HPC environments (Kimmo Mattila) 10:45-11:00 Coffee break 11:00-12:30 HANDS-ON SESSION: Using the Chipster software to analyze 16S rRNA data (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen) Introduction to Chipster Data preprocessing with Mothur-based tools and FastQC 12:30-13:30 Lunch 13:30-16:30 HANDS-ON SESSION: Using Chipster continues (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen and Jarno Tuimala) // coffee break included Data preprocessing with Mothur-based tools Taxonomic classification with Mothur-based tools Statistical analysis of marker gene data: Comparing diversity and abundance between groups Visualization Day 2, Tuesday 4.4.2017: Sample preparation, sequencing, quality control, filtering and assembly 9:00-12:30 LECTURES 9:00-10:15 Selecting and preparing samples for metaomics (Anu Mikkonen) Your samples are only as good as your sample preparation routines are, and your results are only as valid as your experimental design is. This talk will discuss, showing plenty of real-life examples, all the things that can go wrong before you even send your DNA samples out for the sequencing. The talk includes lots of practical recommendations on what to do before, or sometimes instead of, metagenomics analysis. 10:15-10:45 Sequencing technologies for metagenomics (Petri Auvinen) 10:45-11:00 Coffee break 11:00-11:30 Metagenomics analysis – an overview (Nils Willassen) 11:30-12:00 META-pipe analysis platform overview (Espen Robertsen, Erik Hjerde) 12:00-12:30 Metagenomics in the cloud (Aleksandr Agafonov) 12:30-13:15 Lunch 13:15-16:30 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Quality control and filtering Assembly Validation Day 3, Wednesday 5.4.2017: Taxonomic and functional analysis 9:00-11:30 LECTURES 9:00-9:30 Taxonomic classification (Nils Willassen) 9:30-10:00 Functional assignment (Espen Robertsen) 10:00-10:15 Coffee break 10:15-10:45 New data resources for marine metagenomics (Nils Willassen) 10:45-11:15 The metagenomics data life-cycle: standards and best practice (TBD) 11:15-12:00 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) Introduction, taxonomic classification 12:00-13:00 Lunch 13:00-16:30 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Taxonomic classification continued Functional assignment Day 4, Thursday 6.4.2017: Comparative metagenomics and other analysis 9:00-12:00 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Visualization of data Comparative metagenomics 12:00-13:00 Lunch 13:00-14:30 LECTURES AND WRAP-UP 13:00-13:35 Arctic metagenomes as a scaffold for understanding metatranscriptomic data (Jenni Hultman) 13:35-14:00 Genome assembly from metagenomic reads (Jenni Hultman) 14:00-14:30 Feedback and wrap up   Language:  EnglishPrice:          Free of charge https://events.prace-ri.eu/event/602/ 2017-04-03 06:00:00 UTC 2017-04-06 14:00:00 UTC ELIXIR EXCELERATE project and PRACE CSC Finland Oy, Espoo, Finland CSC Finland Oy Espoo Finland Metagenomics CSC [] Anyone workshops_and_courses registration_of_interest EXCELERATEMarine Metagenomics
  • Metagenomics data analysis

    3 - 6 April 2017

    Elixir node event
    Metagenomics data analysis https://tess.elixir-europe.org/events/metagenomics-data-analysis This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. It has also an optional module on community analysis of amplicon sequencing data. 2017-04-03 09:00:00 UTC 2017-04-06 17:00:00 UTC The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. [] [] [] workshops_and_courses [] []
  • ELIXIR-EXCELERATE HPC Train-the-Researcher course

    6 - 7 April 2017

    Málaga, Spain

    Elixir node event
    ELIXIR-EXCELERATE HPC Train-the-Researcher course https://tess.elixir-europe.org/events/elixir-excelerate-hpc-train-the-researcher-course-3af9b3c7-94a5-46ae-a68c-1c73b87049ab ELIXIR-EXCELERATE HPC Train-the-Researcher course, Apr 6-7, 2017, Malaga, Spain 2017-04-06 09:00:00 UTC 2017-04-07 17:00:00 UTC Escuela Técnica Superior de Ingeniería Informática Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur, Málaga, Spain Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur Málaga Málaga Spain Computational biology Computer science Escuela Técnica Superior de Ingeniería Informática, University of Malaga [] life scientistsResearchers workshops_and_courses registration_of_interest high-performance computingtrainingeLearningEeLP
  • ADER17 - Analysis of Differential Expression with RNAseq

    17 April 2017

    Oeiras, Portugal

    Elixir node event
    ADER17 - Analysis of Differential Expression with RNAseq https://tess.elixir-europe.org/events/ader17-analysis-of-differential-expression-with-rnaseq    IMPORTANT DATES for this Course   Deadline for applications: April 10th 2017   Course dates: April 17th - April 20th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application, until we reach 20 participants. Course description Overview High-throughput technologies allow us to detect transcripts present in a cell or tissue. This course covers practical aspects of the analysis of differential gene expression by RNAseq. Participants will be presented with real world examples and work with them in the training room, covering all the steps of RNAseq analysis, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial steps of secondary analysis, such as functional enrichment of the obtained gene lists. Target Audiences Life Scientists who want to be able to use NGS data to evaluate gene expression (RNAseq). Computational researchers that wish to get acquainted with the concepts and methodologies used in RNAseq are also welcome. Participants are encouraged to bring their own data and will have the opportunity to apply the concepts learned in the course. Pre-requisites Familiarity with elementary statistics and a few basics of scripting in R. Please have a look at the following resources and gauge your ability to use R in statitics at the basic level: Introduction to Data Science with R Videos from Coursera's four week course in R Statistics at Square One - BMJ Basic Unix command line skills, such as being able to navigate in a directory tree and copy files. See, for example, "Session 1" of the Software Carpentry training for a Unix introduction (Shell-novice material from the Software Carpentry Foundation). 2017-04-17 07:30:00 UTC 2017-04-17 07:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 1000-029 Transcriptomics RNA-Seq [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • Advanced Optimization and Threading

    26 - 28 April 2017

    Elixir node event
    Advanced Optimization and Threading https://tess.elixir-europe.org/events/advanced-optimization-and-threading This course will give you the tools and skills needed for writing high performing code for scientific computing. It focuses on techniques that enable you to extract maximum performance from a single node in a modern supercomputer or cluster, which provides the foundation for good performance even for codes running on multiple nodes. 2017-04-26 09:00:00 UTC 2017-04-28 16:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Linux 1 - Introduction to Linux

    15 - 16 May 2017

    Elixir node event
    Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux-20a2b0b6-7ec2-489a-b317-6dd9dbf6131b This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-05-15 09:30:00 UTC 2017-05-16 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • CSC Summer School in High-Performance Computing 2017

    27 June - 5 July 2017

    Elixir node event
    CSC Summer School in High-Performance Computing 2017 https://tess.elixir-europe.org/events/csc-summer-school-in-high-performance-computing-2017 The 8th CSC Summer School brings together undergraduate and graduate students and postdoctoral researchers in different disciplines of scientific computing. The contents consist of lectures and hands-on training on parallel programming, code optimization and other necessary skills in development of scientific software. 2017-06-27 09:00:00 UTC 2017-07-05 17:00:00 UTC Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. [] [] [] workshops_and_courses [] []
  • Protein–lipid interactions: Advanced experimental and computational tools

    2 - 9 July 2017

    Elixir node event
    Protein–lipid interactions: Advanced experimental and computational tools https://tess.elixir-europe.org/events/protein-lipid-interactions-advanced-experimental-and-computational-tools This EMBO practical course will bridge cutting edge experimental and computational tools to study lipid-protein interactions. Advanced PhD students and Postdocs will receive ample opportunities to learn about the increasing importance and benefits of interdisciplinary research in this developing area. Followed by one day of lectures by top scientists in the field, the practical part will be structured into 5 modules, where participants will be able to learn latest wet lab techniques combined with advanced molecular dynamics simulations in small groups. 2017-07-02 18:00:00 UTC 2017-07-09 12:00:00 UTC See the EMBO event page for details. See the EMBO event page for details. [] [] [] workshops_and_courses [] []
  • Variant analysis with GATK

    13 - 15 September 2017

    Elixir node event
    Variant analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-3034974f-dd45-41d0-ac44-3cd647115520 This workshop will focus on the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the "Best Practices" developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. 2017-09-13 09:00:00 UTC 2017-09-15 17:00:00 UTC The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq data analysis

    28 - 29 September 2017

    Elixir node event
    Single cell RNA-seq data analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis This hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools. It consists of two alternative days, please select based on your computational background EITHER 1) 28.9 Single cell RNA-seq data analysis with R (previous experience with R required), OR 2) 29.9 Single cell RNA-seq data analysis with Chipster (suitable for everybody) 2017-09-28 09:00:00 UTC 2017-09-29 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Genome assembly and annotation course 3

    23 - 27 October 2017

    Oeiras, Portugal

    Elixir node event
    Genome assembly and annotation course 3 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-3 ELIXIR Genome assembly and annotation course 3, Oct 23-27 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-10-23 09:00:00 UTC 2017-10-27 17:00:00 UTC ELIXIR PT, Instituto Gulbenkian Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Genomics Instituto Gulbenkian de Ciência [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomics AssemblyTrainingeLearningEeLP
  • GOBLET/ELIXIR-EXCELERATE Workshop on e-learning

    21 November 2017

    Oeiras, Portugal

    Elixir node event
    GOBLET/ELIXIR-EXCELERATE Workshop on e-learning https://tess.elixir-europe.org/events/goblet-elixir-excelerate-workshop-on-e-learning GOBLET/ELIXIR-EXCELERATE Workshop on e-learning, Nov 21, 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-11-21 09:00:00 UTC 2017-11-21 17:00:00 UTC Instituto Gulbenkian, ELIXIR Portugal, GOBLET Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Bioinformatics Instituto Gulbenkian de Ciência [] Researchersteachers workshops_and_courses registration_of_interest TeachingeLearningEeLPbioinformatics
  • Introduction to Biopython

    27 - 28 November 2017

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython-dadfcc53-9c9c-434d-95f5-90d20fad3fae This course provides a short introduction to python programming and Biopython tool library 2017-11-27 09:00:00 UTC 2017-11-28 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Introduction to base R

    5 February 2018

    Elixir node event
    Bioweek: Introduction to base R https://tess.elixir-europe.org/events/bioweek-introduction-to-base-r This course is aimed at people who wish to start learning R programming from scratch. No previous experience with R or other programming languages is expected. 2018-02-05 09:00:00 UTC 2018-02-05 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Data visualisation using RStudio and ggplot

    6 February 2018

    Elixir node event
    Bioweek: Data visualisation using RStudio and ggplot https://tess.elixir-europe.org/events/bioweek-data-visualisation-using-rstudio-and-ggplot In this course you will learn how to clean up, manipulate and visualise your data using the efficient workflows available in RStudio and the tidyverse packages. These central data science skills are usually also called data wrangling and exploratory data analysis. 2018-02-06 09:00:00 UTC 2018-02-06 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Think Tank Hackathon

    6 - 7 February 2018

    Ljubljana, Slovenia

    Elixir node event
    Think Tank Hackathon https://tess.elixir-europe.org/events/think-tank-hackathon CHARME Think Tank Hackathon, Feb 6-7, 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2018-02-06 09:00:00 UTC 2018-02-07 17:00:00 UTC CHARME, ELIXIR Slovenia, NIB University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Bioweek: Computing intensive bioinformatics analysis on Taito

    7 February 2018

    Elixir node event
    Bioweek: Computing intensive bioinformatics analysis on Taito https://tess.elixir-europe.org/events/bioweek-computing-intensive-bioinformatics-analysis-on-taito The Taito supercluster environment provides a good platform for running computing intensive bioinformatics analysis. However, to be able to utilize Taito effectively, you must understand how the batch job system works in Taito. 2018-02-07 09:00:00 UTC 2018-02-07 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Bioweek: Using cPouta cloud in bioinformatics

    8 February 2018

    Elixir node event
    Bioweek: Using cPouta cloud in bioinformatics https://tess.elixir-europe.org/events/bioweek-using-cpouta-cloud-in-bioinformatics This course day provides an introduction to the basic features of the cPouta cloud and demonstrates how a virtual bioinformatics server is set up in cPouta. 2018-02-08 09:00:00 UTC 2018-02-08 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
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