Genome assembly and annotation course 3
23 - 27 October 2017
Oeiras, PortugalGenome assembly and annotation course 3 https://elixir.mf.uni-lj.si/course/view.php?id=25 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-3 ELIXIR Genome assembly and annotation course 3, Oct 23-27 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-10-23 09:00:00 UTC 2017-10-27 17:00:00 UTC ELIXIR PT, Instituto Gulbenkian Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Genomics Instituto Gulbenkian de Ciência  life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomics AssemblyTrainingeLearningEeLP
Hands-on workshop in Marine Metagenomics
26 - 30 November 2018
Tromsø, NorwayHands-on workshop in Marine Metagenomics https://elixir.mf.uni-lj.si/course/view.php?id=43 https://tess.elixir-europe.org/events/hands-on-workshop-in-marine-metagenomics ELIXIR Norway in cooperation with ELIXIR Slovenia is pleased to announce the first Hands-on workshop in Marine Metagenomics. The aim of the workshop is to introduce the participants to the research field of metagenomics with focus on samples from the marine environment. The theoretical part for each subject will be introduced via lectures, followed by a practical Hands-on session. Place: The Arctic University of Norway, each day from 09.00 until 16.00 Target audience: Researcher and students above bachelor level Prerequisite: None, but study or research interest in metagenomics is expected **COURSE FEE: € 250,-** **Deadline for application: November 1, 2018** **[Register here](https://goo.gl/forms/Zw6lk3pAoMdVcykE3)** The maximum number of participants is 20. If the interest for the course is greater than this, we will select participants based on a geographical distribution and on how relevant the workshop will be to the participant. 2018-11-26 09:00:00 UTC 2018-11-30 16:00:00 UTC Arctic University of Norway, ELIXIR Norway, ELIXIR Slovenia Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 1, Tromsø, Norway Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 1 Tromsø Troms Norway 9019 Genomics Metagenomics Marine biology Arctic University of Norway  ResearchersPhD studentsMaster students 20 workshops_and_courses registration_of_interest Marine MetagenomicseLearningEeLP
9 - 13 September 2019
Oeiras, PortugalComputational PANGenomics http://gtpb.igc.gulbenkian.pt/bicourses/2019/CPANG19/index.html https://tess.elixir-europe.org/events/computational-pangenomics Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation as the number of sequenced genomes grows. In particular, they tend to bias us away from the observation of variation in the genomes we study. A general solution to this problem is to use a pangenome that incorporates both sequence and variation from many individuals as our reference system. This pangenome is naturally modelled as a graph with annotations and can provide all the functionality traditionally provided by linear reference genomes. Unlike linear reference genomes, a pangenome readily incorporates both small and large variation, allowing bias-free genotyping at known alleles. In this course, we will explore the use of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types. Such techniques will aid any researcher working on organisms of high genetic diversity or on organisms lacking a high-quality reference genome. This course targets all researchers interested in learning about an exciting paradigm shift in computational genomics. 2019-09-09 09:30:00 UTC 2019-09-13 17:00:00 UTC The Gulbenkian Training Programme in Bioinformatics Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal 2781-901 Instituto Gulbenkian de Ciência, Biodata.pt - Elixir's portuguese node of the european project email@example.com  This course is oriented towards biologists and bioinformaticians. The course will be of particular interest to researchers investigating organisms without a reference genome or populations featuring high levels of genetic diversity. 20 workshops_and_courses registration_of_interest BioinformaticsGenomics
Integrative Biological Interpretation using Proteomics
4 - 7 November 2019
Oeiras, PortugalIntegrative Biological Interpretation using Proteomics http://gtpb.igc.gulbenkian.pt/bicourses/2019/IBIP19/ https://tess.elixir-europe.org/events/integrative-biological-interpretation-using-proteomics Quantitative proteomics by mass spectrometry has become an essential tool for multi-omics studies aiming at answering important biological questions in a system-wide perspective. Proteomics data contain rich and deep information that can become challenging to extract, interpret, and interface with other experimental outcomes. This training course is aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments. We will focus on quality control from an end-user perspective, link to the underlying genomic context, multivariate analysis, protein complexes investigation, and compare different platforms for biological interpretation. After the training, participants will be able to critically interpret results, troubleshoot analyses, and will be ready to successfully attend more specialized training e.g. in proteogenomics or biological network analysis. 2019-11-04 09:30:00 UTC 2019-11-07 18:00:00 UTC The Gulbenkian Training Programme in Bioinformatics, Biodata.pt - Elixir's portuguese node of the european project R. Q.ta Grande 6, 6, Rua Quinta Grande, Oeiras, Portugal R. Q.ta Grande 6, 6, Rua Quinta Grande Oeiras Portugal 2781-901 Instituto Gulbenkian de Ciência firstname.lastname@example.org  This training course is aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments. 20 workshops_and_courses registration_of_interest BioinformaticsProteomics
ELIXIR Norway: Hands-on bioinformatics NeLS workshop
26 November 2019
Tromsø, NorwayELIXIR Norway: Hands-on bioinformatics NeLS workshop https://elixir.mf.uni-lj.si/course/view.php?id=50 https://tess.elixir-europe.org/events/elixir-norway-hands-on-bioinformatics-nels-workshop We are pleased to announce the second hands-on bioinformatics NeLS workshop organised in Tromsø by [ELIXIR Norway](https://www.elixir-norway.org/). The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences - [NeLS](nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in Galaxy. More specifically, we will go through how you can store data in NeLS and upload it directly into Galaxy. We will also construct and run a complete sequence analysis workflow for taxonomic profiling on a metagenomic sample. There are no requirements for programming skills or experience using the command line, as Galaxy provides a web interface for running analysis. 2019-11-26 09:00:00 UTC 2019-11-26 15:00:00 UTC ELIXIR Norway University of Tromsø, Medisin og helsefagbygget (MH øst): Datarom (U7.110), Tromsø, Norway University of Tromsø, Medisin og helsefagbygget (MH øst): Datarom (U7.110) Tromsø Tromsø Norway 9019 Bioinformatics University of Tromsø ELIXIR Norway life scientistsdata managers 20 workshops_and_courses by_invitation bioinformaticsNeLSGalaxyEeLPeLearning
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