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28 events found

Country: Slovenia  or Australia 

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Content provider: Birmingham Metabolomics Tra...  or ELIXIR Slovenia  or Galaxy Project  or BioExcel 

  • Train-the-Trainer course

    28 - 30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Train-the-Trainer course https://tess.elixir-europe.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Linux Command line course

    30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Linux Command line course https://tess.elixir-europe.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Think Tank Hackathon

    6 - 7 February 2018

    Ljubljana, Slovenia

    Elixir node event
    Think Tank Hackathon https://tess.elixir-europe.org/events/think-tank-hackathon CHARME Think Tank Hackathon, Feb 6-7, 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2018-02-06 09:00:00 UTC 2018-02-07 17:00:00 UTC CHARME, ELIXIR Slovenia, NIB University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Introductory Linux Tutorial for Life Sciences 3

    13 - 15 February 2018

    Elixir node event
    Introductory Linux Tutorial for Life Sciences 3 https://tess.elixir-europe.org/events/introductory-linux-tutorial-for-life-sciences-3 ELIXIR tutorial "Introductory Linux Tutorial for Life Sciences 3", Feb 13-15, 2018 2018-02-13 09:00:00 UTC 2018-02-15 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    20 - 21 March 2018

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-d546bbf9-c5a9-4fe3-b453-33bfab644894 2018-03-20 09:00:00 UTC 2018-03-21 00:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St, Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 [] Christina Hall [] [] [] [] []
  • Variant Calling with Galaxy & the GVL for beginners

    21 - 22 March 2018

    Carlton, Australia

    Variant Calling with Galaxy & the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-the-gvl-for-beginners-8debd5bf-4a06-4b05-a560-74476e99ab9e 2018-03-21 09:00:00 UTC 2018-03-22 00:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan Street, Carlton, Carlton, Australia Melbourne Bioinformatics, 187 Grattan Street, Carlton Carlton Australia 3053 [] Christina Hall [] [] [] [] []
  • RNA-Seq analysis using Galaxy

    1 - 3 May 2018

    The University of Queensland, St Lucia, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy-9be69c3b-453e-4854-a167-9d36c06744c0 2018-05-01 09:00:00 UTC 2018-05-03 00:00:00 UTC QFAB Bioinformatics Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Australia Room 3.146, Queensland Bioscience Precinct The University of Queensland, St Lucia Brisbane Australia [] training@qfab.org [] [] [] [] []
  • Variant detection using Galaxy

    15 - 17 May 2018

    The University of Queensland, St Lucia, Australia

    Variant detection using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-671d68aa-778d-464a-9ef1-f0cf0bb58c7e 2018-05-15 09:00:00 UTC 2018-05-17 00:00:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Australia Room 3.141, Queensland Bioscience Precinct The University of Queensland, St Lucia Brisbane Australia [] training@qfab.org [] [] [] [] []
  • Genome assembly using Galaxy

    29 - 31 May 2018

    The University of Queensland, St Lucia, Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-fed836a4-65cc-4886-9bb7-8214b396a99d 2018-05-29 09:00:00 UTC 2018-05-31 00:00:00 UTC QFAB Bioinformatics Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Australia Room 3.146, Queensland Bioscience Precinct The University of Queensland, St Lucia Brisbane Australia [] training@qfab.org [] [] workshops_and_courses [] []
  • PRACE HPC Workshop 2018 - Parallel computing in bioinformatics research

    30 May 2018

    Ljubljana, Slovenia

    Elixir node event
    PRACE HPC Workshop 2018 - Parallel computing in bioinformatics research https://tess.elixir-europe.org/events/prace-hpc-workshop-2018-parallel-computing-in-bioinformatics-research HPC PRACE workshop "Parallel computing in bioinformatics research", May 30, 2018 at the HPC PraceDays2018, Ljubljana, Slovenia 2018-05-30 14:00:00 UTC 2018-05-30 16:30:00 UTC PRACE Faculty of Law, University of Ljubljana, Poljanski nasip 2, Ljubljana, Slovenia Faculty of Law, University of Ljubljana, Poljanski nasip 2 Ljubljana Slovenia Comparative genomics University of Ljubljana, Faculty of Law [] life scientistsResearchers 30 workshops_and_courses registration_of_interest comparative genomicshigh-performance computingtrainingeLearningEeLP
  • RNA-Seq analysis using Galaxy

    7 - 9 August 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-4bdade29-08f1-43f1-9565-80c67e622d6d 2018-08-07 09:00:00 UTC 2018-08-09 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Genome assembly using Galaxy

    4 - 6 September 2018

    Brisbane, Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-4c8c0590-499b-4945-a1be-19e94725fe48 2018-09-04 09:00:00 UTC 2018-09-06 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia , Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Variant detection using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    Variant detection using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy-19aa16bf-f8a0-4693-bbfb-53bf379662af 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.146 Queensland Bioscience Precinct The University of Queensland St Lucia , Brisbane, Australia Room 3.146 Queensland Bioscience Precinct The University of Queensland St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] [] [] []
  • RNA-Seq analysis using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-99676e29-b720-4387-b14e-a1ae64b772ad 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 Bioinformatics University of Queensland training@qfab.org [] [] workshops_and_courses [] Galaxy RNA-Seqbioinformatics
  • Genome assembly using Galaxy

    2 - 4 October 2018

    Brisbane , Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-7e279e19-4b6c-4274-bd0f-e620536bbbba 2018-10-02 09:00:00 UTC 2018-10-04 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane , Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Introduction to Galaxy & the Genomics Virtual Laboratory

    18 - 19 October 2018

    Melbourne, Australia

    Introduction to Galaxy & the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-the-genomics-virtual-laboratory 2018-10-18 09:00:00 UTC 2018-10-19 00:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 [] Melbourne Bioinformatics [] [] [] [] []
  • Introduction to Galaxy Australia – Metagenomics

    14 - 15 November 2018

    Various, Australia

    Introduction to Galaxy Australia – Metagenomics https://tess.elixir-europe.org/events/ucsc-genome-browser-a-full-featured-genomic-data-system Led by Robert Kuhn, Associate Director of UCSC Genome Browser, Training and Outreach, Genome Browser licensing. This workshop provides hands-on instruction in the use of the UCSC Genome Browser, which is a widely used platform for interpreting many types of genome-wide data for a large number of organisms. In the context of human genetics, aggregated data from hundreds of projects are available, including short and long variants (SNPs and CNVs), benign and pathogenic variants from several large databases, and metagenomic data such as histone- and DNA modification. The Browser provides a consistent interface and gene models for mouse and more than 120 other animals. The workshop will also demonstrate recently added features including display of exons only, display of discontinuous regions of the genome and the simultaneous, joint configuration of multiple wiggle files, such as are used to display RNA-seq data. This session will be offered at several EMBL-ABR Nodes around Australia, with expert hands-on help provided at each venue. 2018-11-14 09:00:00 UTC 2018-11-15 00:00:00 UTC EMBL-ABR Australia, Various, Australia Australia Various Various Australia [] [] [] workshops_and_courses [] []
  • ELIXIR TtR course: Basic genomics using advanced analysis tools

    20 - 21 December 2018

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR TtR course: Basic genomics using advanced analysis tools https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si [] life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
  • Introduction to Galaxy & the Genomics Virtual Laboratory

    21 - 22 March 2019

    Melbourne, Australia

    Introduction to Galaxy & the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomics-virtual-laboratory-3b2532e3-a1fc-414c-9bb4-936bf288ac48 2019-03-21 09:00:00 UTC 2019-03-22 00:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Melbourne City Australia [] enquiries @ melbourne bio informatics . org.au [] [] [] [] []
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    22 - 23 March 2019

    Melbourne , Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-b3ebea1c-63f5-4d2b-9c6e-a7730d4a0239 2019-03-22 09:00:00 UTC 2019-03-23 00:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne , Australia 187 Grattan St, 187, Grattan Street Melbourne Australia [] enquiries @ melbourne bio informatics . org.au [] [] [] [] []
  • Genome Browsers and using UCSC genome Browser tools

    25 - 26 March 2019

    Melbourne, Australia

    Genome Browsers and using UCSC genome Browser tools https://tess.elixir-europe.org/events/genome-browsers-and-using-ucsc-genome-browser-tools-e7d28a75-046c-4e5d-9132-6880c7f35d67 2019-03-25 09:00:00 UTC 2019-03-26 00:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia [] enquiries @ melbourne bio informatics . org.au [] [] [] [] []
  • Introduction to Variant Calling with Galaxy & the GVL

    26 - 27 March 2019

    Melbourne, Australia

    Introduction to Variant Calling with Galaxy & the GVL https://tess.elixir-europe.org/events/introduction-to-variant-calling-with-galaxy-the-gvl 2019-03-26 09:00:00 UTC 2019-03-27 00:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia [] enquiries @ melbourne bio informatics . org.au [] [] [] [] []
  • Workshop on High-Content Imaging and Data Science for Virtual Screening and Drug Discovery

    13 - 17 May 2019

    Bled, Slovenia

    Elixir node event
    Workshop on High-Content Imaging and Data Science for Virtual Screening and Drug Discovery https://tess.elixir-europe.org/events/workshop-on-high-content-imaging-and-data-science-for-virtual-screening-and-drug-discovery High-throughput phenotypic screening, based on high-content imaging, is increasingly often used as a tool for drug discovery. Compound screens are used to find hits that produce the desired phenotypes in relevant cellular assays. Genomic screens are used to elucidate the underlying molecular pathways and identify suitable drug targets. Since high-content screening produces a lot of data, data science approaches such as statistics, machine learning and neural networks can help interpret the collected data. Just as virtual screening can be performed in chemoinformatics (learning predictive models for QSAR - quantitative structure-activity relations) from data obtained through compound screens, similar approaches can be taken in the context of high-throughput phenotypic screening. This will be the first event of its kind in the region of Slovenia and Friuli-Venezia-Giulia. The event will bring together a group of experts covering different topics in the fields of high-content screening, image analysis, chemoinformatics and machine learning. This will allow graduate students and researchers from both academia and industry to familiarize themselves with these cutting-edge topics. The workshop will have an impact on both the academic and industrial sector in the region (e.g. biotech companies of all sizes). The workshop is part of the INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN (Big Data and Disease Models: A Cross- border Platform for Validated Biotech Industry Kits), which brings together experts on the topic from academia and industry. 2019-05-13 09:00:00 UTC 2019-05-17 18:00:00 UTC Jozef Stefan Institute, Ljubljana, Slovenia Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia, Bled, Slovenia Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia Bled Gorenjska Slovenia SI-4260 Drug discovery Genomics Rikli Balance Hotel elixir@mf.uni-lj.si European UnionINTERREG V-A Italy-Slovenia 2014-2020 project TRAIN PhD studentsGraduate studentsResearchersBusiness EntrepreneursBiotechnology CompaniesPharmaceutical Industry workshops_and_courses registration_of_interest INTERREGPhenotypic screeningData analysisVirtual ScreeningHigh-content imaging
  • Introduction to Galaxy & Galaxy Workflows

    23 - 24 September 2020

    Australia

    Introduction to Galaxy & Galaxy Workflows https://tess.elixir-europe.org/events/introduction-to-galaxy-galaxy-workflows 2020-09-23 09:00:00 UTC 2020-09-24 00:00:00 UTC Melbourne Bioinformatics Australia Australia [] Simon Gladman [] [] [] [] []
  • Galaxy Australia: enabling online data analysis for the research community

    4 - 5 November 2020

    Australia

    Galaxy Australia: enabling online data analysis for the research community https://tess.elixir-europe.org/events/webinar-galaxy-australia-enabling-online-data-analysis-for-the-research-community Galaxy is your ultimate research buddy - an online platform for biological research that gives you access to computational data analysis tools and workflows without the need for programming experience. It is supported by a rich collection of training materials and an active community of scientists. In this webinar we explore how Galaxy can transform your research through access to high performance computing power coupled with open, reproducible computational workflows and support from the Galaxy community. We’ll look at real-life examples of how Galaxy workflows are being applied to integrative meta-omics of microbial communities and how Galaxy is being leveraged to address the global challenges of COVID-19 research. Presenters: Dr Gareth Price, Service Manager, Galaxy Australia & Dr Johan Gustafsson, Bioinformatics Engagement Officer, Australian BioCommons Who the webinar is for: This webinar is suitable for life-science researchers. No prior knowledge of Galaxy or programming is required. 2020-11-04 09:00:00 UTC 2020-11-05 00:00:00 UTC Australian BioCommons Australia Australia [] Gareth Price, Johan Gustafsson [] Life Science Researchers workshops_and_courses first_come_first_served []
  • RNA-seq: from reads to differentially expressed genes

    23 - 25 February 2021

    Australia

    RNA-seq: from reads to differentially expressed genes https://tess.elixir-europe.org/events/workshop-rna-seq-from-reads-to-differentially-expressed-genes An introduction to RNA-seq analysis using the Galaxy Australia web platform **About this workshop** RNA-seq is a popular method for simultaneously measuring and comparing the expression of tens of thousands of genes in multiple samples. There are many steps involved in analysing RNA-Seq data. The analysis begins with sequencing reads (FASTQ files). These are usually aligned to a reference genome. The number of reads mapped to each gene can then be counted. This results in a table of counts, which is what we perform statistical analyses on to determine differentially expressed genes and pathways. This practical workshop provides a hands-on introduction to RNA-seq analysis from reads to counts, to differential expression. The workshop makes use of Galaxy, an online platform for biological research that allows people to use computational data analysis tools and workflows without the need for programming experience. The workshop materials are based on the following Galaxy training workshops: - [RNA-seq reads to counts](https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.html) - [RNA-seq counts to genes](https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.html) **Who the workshop is for** Researchers who have, or will soon acquire, RNA-seq short read data that they need to analyse themselves. No prior experience with RNA-seq analysis is required. The workshop requires you to be familiar with using and navigating Galaxy Australia. If you are new to the Galaxy platform (an online platform for computational analysis) we recommend that you work through the Galaxy 101 For Everyone tutorial in advance of the workshop. **Date/Time: 23 - 24 February 2:00 - 5:00 pm AEDT** **How to apply** The workshop is free but due to anticipated high demand, participation is subject to application with selection. Places are strictly limited to 30 participants. Ineligible or incomplete applications will not be considered. For your application to be considered you must: - Have an Australian institutional email address - Have, or will soon acquire, RNA-seq data - Complete the application form Applications will be reviewed by the organising committee and all applicants will be informed of the status of their application (successful, waiting list, unsuccessful) by Tuesday 16 February 2021. Please complete the application form if you are interested in attending this workshop. Applications close 5pm AEDT Friday 5 February 2021. **[Apply here](https://biocommons-rnaseq.eventbrite.com.au/)** The workshop is presented by the [Australian Biocommons](https://www.biocommons.org.au/) and [Melbourne Bioinformatics](https://www.melbournebioinformatics.org.au/) with the assistance of a network of Facilitators from around Australia. This event is part of a series of [bioinformatics training events](https://www.biocommons.org.au/events). If you'd like to hear when registrations open for other events, please [subscribe to Australian Biocommons](https://www.biocommons.org.au/subscribe). 2021-02-23 09:00:00 UTC 2021-02-25 00:00:00 UTC Australian BioCommons Australia, Australia Australia Australia [] Jessica Chung, Tom Harrop [] Biologists 30 workshops_and_courses registration_of_interest []
  • Plant genomics: chloroplast genome assembly using Galaxy Australia

    21 - 22 April 2021

    Australia

    Plant genomics: chloroplast genome assembly using Galaxy Australia https://tess.elixir-europe.org/events/workshop-plant-genomics-chloroplast-genome-assembly-using-galaxy-australia It is becoming increasingly practical to use large genomic data sets to answer research questions in plant biology, but it can be difficult to know where to start. In this workshop, you will perform a genome assembly using chloroplast sequencing data and the Galaxy Australia web platform. You'll have the opportunity to try out the workflows on the same or other data, using the free Galaxy platform and its tools. Galaxy is an online platform for biological research that allows people to use computational data analysis tools and workflows without the need for programming experience. The material covered in this workshop is freely available through the Galaxy Training Network. The workshop will be held via Zoom and involve a combination of presentations by the lead trainer and smaller breakout groups supported by experienced facilitators. **Lead trainer:** Dr Anna Syme, Bioinformatician, Australian BioCommons, Melbourne Bioinformatics, University of Melbourne. Anna has a long history as a research scientist and has recently worked at the Royal Botanic Gardens Victoria. Her work on the Bioplatforms Australia project, Genomics for Australian Plants, and her current Australian BioCommons role sees her contributing to workforce transition of researchers working with genomic data. **Learning objectives** By the end of the workshop you should be able to: - Assemble a chloroplast genome from a test dataset of Oxford Nanopore long sequencing reads - Polish the assembly with short Illumina sequencing reads - View the assembly in a genome browser and an assembly graph viewer - Describe how common tools can be combined to produce a workflow for genome assembly **Who the workshop is for** This workshop is suitable for Australian researchers with an interest in using Galaxy Australia for genome assembly. The workshop requires some prior knowledge of genome assembly and the basics of using Galaxy Australia. If you are new to these topics we recommend that you work through the following tutorials in advance: - [A short introduction to Galaxy] (https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-short/tutorial.html) - [Introduction to Genome Assembly] (https://training.galaxyproject.org/training-material/topics/assembly/tutorials/general-introduction/tutorial.html) Additional tutorials on genome assembly can be found on the Galaxy Training Network. **Date/Time:** 21 April 1:00pm - 4:00pm AEST **How to join** The workshop is free but places are strictly limited and registration requires an Australian institutional email address. [Register here] (https://plant-genomics-galaxy.eventbrite.com.au/) The workshop is presented by the Australian Biocommons and Melbourne Bioinformatics with the assistance of a network of Facilitators from around Australia. This event is part of a series of bioinformatics training events in partnership with Galaxy Australia. If you'd like to hear when registrations open for other events, please subscribe to Australian Biocommons. 2021-04-21 09:00:00 UTC 2021-04-22 00:00:00 UTC Australian BioCommons Australia, Australia Australia Australia [] Anna Syme [] [] 30 workshops_and_courses first_come_first_served []

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