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  • Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL)

    11 - 16 May 2021

    Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) https://tess.elixir-europe.org/events/streamlining-accessibility-and-computability-of-large-scale-genomic-datasets-with-the-nhgri-genome-data-science-analysis-visualization-and-informatics-lab-space-anvil 2021-05-11 09:00:00 UTC 2021-05-16 00:00:00 UTC [] Michael Schatz [] [] [] [] []
  • Galaxy Training Network CoFest

    20 - 21 May 2021

    Galaxy Training Network CoFest https://tess.elixir-europe.org/events/galaxy-training-network-cofest 2021-05-20 09:00:00 UTC 2021-05-21 00:00:00 UTC [] Saskia Hiltemann, Helena Rasche, Bérénice Batut, Jennifer Hillman-Jackson, Delphine Lariviere, Anna Syme, Maria Doyle [] [] [] [] []
  • 9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis

    25 May - 12 June 2021

    České Budějovice, Czechia

    9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis https://tess.elixir-europe.org/events/repeatexplorer-workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2021-05-25 09:00:00 UTC 2021-06-12 00:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia [] Jiří Macas [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served []
  • Metatranscriptomics analysis using microbiome RNA-seq data in Galaxy

    25 - 26 May 2021

    Metatranscriptomics analysis using microbiome RNA-seq data in Galaxy https://tess.elixir-europe.org/events/metatranscriptomics-analysis-using-microbiome-rna-seq-data-in-galaxy-9ba7230f-42c8-43ef-975d-36a1e0726a30 2021-05-25 09:00:00 UTC 2021-05-26 00:00:00 UTC [] Pratik Jagtap, Subina Mehta, Tim Griffin, Magnus Arntzen, Saskia Hiltemann [] [] [] [] []
  • Viral variant calling with Galaxy

    26 - 27 May 2021

    Viral variant calling with Galaxy https://tess.elixir-europe.org/events/viral-variant-calling-with-galaxy 2021-05-26 09:00:00 UTC 2021-05-27 00:00:00 UTC [] Gareth Price, Igor Makunin [] [] [] [] []
  • Annotation automatique de génomes bactériens

    27 - 28 May 2021

    Annotation automatique de génomes bactériens https://tess.elixir-europe.org/events/annotation-automatique-de-genomes-bacteriens-d478a839-1a6d-470e-accd-ef31108fd462 2021-05-27 09:00:00 UTC 2021-05-28 00:00:00 UTC [] Valentin Loux, Jean-François Gibrat, Thomas Lacroix [] [] [] [] []
  • Bacterial variant calling with Galaxy

    27 - 28 May 2021

    Bacterial variant calling with Galaxy https://tess.elixir-europe.org/events/bacterial-variant-calling-with-galaxy 2021-05-27 09:00:00 UTC 2021-05-28 00:00:00 UTC [] Gareth Price, Igor Makunin [] [] [] [] []
  • Comparaison de génomes microbiens

    28 - 29 May 2021

    Comparaison de génomes microbiens https://tess.elixir-europe.org/events/comparaison-de-genomes-microbiens-74b60190-0019-4ab9-bbf0-4e5ff3aec608 2021-05-28 09:00:00 UTC 2021-05-29 00:00:00 UTC [] Valentin Loux, Hélène Chiapello [] [] [] [] []
  • GalaxyNL Meeting 2021

    28 - 29 May 2021

    GalaxyNL Meeting 2021 https://tess.elixir-europe.org/events/galaxynl-meeting-2021 2021-05-28 09:00:00 UTC 2021-05-29 00:00:00 UTC [] Saskia Hiltemann [] [] [] [] []
  • Strengthening the integration of Galaxy in the Tools Ecosystem

    3 - 14 June 2021

    Strengthening the integration of Galaxy in the Tools Ecosystem https://tess.elixir-europe.org/events/elixir-galaxy-community-amp-tools-platform-workshop 2021-06-03 09:00:00 UTC 2021-06-14 00:00:00 UTC [] Frederik Coppens, Björn Grüning and Nicola Soranzo [] [] [] [] []
  • BioExcel Summer School on Biomolecular Simulations

    4 - 11 June 2021

    BioExcel Summer School on Biomolecular Simulations https://tess.elixir-europe.org/events/bioexcel-summer-school-on-biomolecular-simulations-a8333d9f-0f1c-440b-bede-bf6320971623 The summer school will include lectures and hands-on sessions on the following topics: - Molecular Dynamics simulations - Biomolecular Docking - Free energy calculations - Advanced sampling methods (Metadynamics) - BioExcel Building Blocks (BioBB) - Quantum mechanics/molecular mechanics (QM/MM) During the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and/or experts in the use of the software, will provide guidance and support. **Audience and Prerequisites** The summer school is intended for researchers (primarily PhD and post-docs) using or planning to use biomolecular modeling and simulation in their everyday research. Familiarity with Linux and basic knowledge of molecular modelling software is a requirement. 2021-06-04 13:00:00 UTC 2021-06-11 16:10:00 UTC BioExcel Molecular modelling Molecular dynamics [] [] Early Career Researcher 30 workshops_and_courses [] biomolecular simulationsmolecular dynamicsMolecular dockingfree energyQM/MM
  • Metabolomics Data Processing and Data Analysis

    7 June - 2 July 2021

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis-600f05c6-102c-4a4d-bece-76bea2435d8d #Content Overview This online course explores the tools and approaches that are used to process and analyse metabolomics data. You will investigate the challenges that are typically encountered in the analysis of metabolomics data, and provide solutions to overcome these problems. #Topics Covered * An introduction to metabolomics * An overview of the untargeted metabolomics workflow * The influence of experimental design and data acquisition on data analysis and data quality * An overview of processing NMR data * Processing direct infusion mass spectrometry data with a hands-on exercise * Processing liquid chromatography-mass spectrometry data with hands-on exercises * Reporting standards and data repositories * Data analysis, detecting outliers and drift, and pre-treatment methods * Univariate data analysis with a hands-on exercise * Multivariate data analysis (including unsupervised and supervised approaches) with hands-on exercises * The importance of statistical validation of results * Computational approaches for metabolite identification and translation of results into biological knowledge with hands-on exercises * What are the future challenges for data processing and analysis in metabolomics #Software used during the course * Galaxy to process direct infusion mass spectrometry data * XCMS online to process liquid chromatography – mass spectrometry data * MetaboAnalyst in the univariate and multivariate data analysis exercises * Metabolite annotation using PUTMEDID_ID operating in the Taverna workflow environment #Level The course would be ideally suited to MSc / PhD students or scientists who are in the early stages of analysing metabolomics data. No previous knowledge of the data processing and statistical analysis approaches is assumed, but a basic understanding of the metabolome, and the analytical techniques applied in the metabolomics field would be beneficial. A pre-course recommended reading list will be provided. 2021-06-07 09:00:00 UTC 2021-07-02 23:59:00 UTC Metabolomics [] [] [] workshops_and_courses [] MetabolomicsData AnalysisData processing
  • Galaxy for microbiome via ASaiM story - From a local project to a global effort to support microbiome data analysis

    7 - 12 June 2021

    Galaxy for microbiome via ASaiM story - From a local project to a global effort to support microbiome data analysis https://tess.elixir-europe.org/events/galaxy-for-microbiome-via-asaim-story-from-a-local-project-to-a-global-effort-to-support-microbiome-data-analysis 2021-06-07 09:00:00 UTC 2021-06-12 00:00:00 UTC [] Bérénice Batut [] [] [] [] []
  • Analyzing your own data in VectorBase

    10 - 11 June 2021

    Analyzing your own data in VectorBase https://tess.elixir-europe.org/events/analyzing-your-own-data-in-vectorbase 2021-06-10 09:00:00 UTC 2021-06-11 00:00:00 UTC [] Presenters [] [] [] [] []
  • Galaxy Training Workshop

    21 - 26 June 2021

    Galaxy Training Workshop https://tess.elixir-europe.org/events/galaxy-training-workshop 2021-06-21 09:00:00 UTC 2021-06-26 00:00:00 UTC [] Gallantries [] [] [] [] []
  • 2021 Galaxy Community Conference (GCC2021)

    28 June - 11 July 2021

    2021 Galaxy Community Conference (GCC2021) https://tess.elixir-europe.org/events/2021-galaxy-community-conference-bcc2021 2021-06-28 09:00:00 UTC 2021-07-11 00:00:00 UTC [] Organizers [] [] [] [] []
  • Traitement de données de séquences par Galaxy

    2 - 3 July 2021

    Traitement de données de séquences par Galaxy https://tess.elixir-europe.org/events/traitement-de-donnees-de-sequences-par-galaxy-cd40fae3-b1b5-4aa1-bb5c-9edac436262a 2021-07-02 09:00:00 UTC 2021-07-03 00:00:00 UTC [] Yvan Le Bras [] [] [] [] []
  • Analyse de données de métabarcoding

    14 - 18 September 2021

    Analyse de données de métabarcoding https://tess.elixir-europe.org/events/analyse-de-donnees-de-metabarcoding-1e148f18-9ec1-4460-b940-949be6d3ab30 2021-09-14 09:00:00 UTC 2021-09-18 00:00:00 UTC [] Mahendra Mariadassou, Cedric Midoux, Olivier Rué [] [] [] [] []
  • Workflow4Experimenters (W4E) international course 2021

    11 - 16 October 2021

    Workflow4Experimenters (W4E) international course 2021 https://tess.elixir-europe.org/events/workflow4experimenters-w4e-international-course-2021 2021-10-11 09:00:00 UTC 2021-10-16 00:00:00 UTC [] Organizers [] [] [] [] []
  • Workflow4Experimenters (W4E) international course 2021

    11 - 16 October 2021

    Workflow4Experimenters (W4E) international course 2021 https://tess.elixir-europe.org/events/workflow4experimenters-w4e-international-course-2021-f9ce83a8-9473-4e2a-985a-589ea1e54410 2021-10-11 09:00:00 UTC 2021-10-16 00:00:00 UTC [] Organizers [] [] [] [] []

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