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16 events found

Event types: Workshops and courses 

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Scientific topics: Computer science  or Genomics 

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Content provider: Birmingham Metabolomics Tra...  or ELIXIR Slovenia  or ELIXIR-SI eLearning Platfor... 

  • Genome assembly and annotation course

    12 - 14 October 2016

    Prague, Czechia

    Elixir node event
    Genome assembly and annotation course https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course ELIXIR Genome assembly and annotation course, Oct 12-14 2016 at the IOCB, Prague, Czech Republic 2016-10-12 09:00:00 UTC 2016-10-14 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Genomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Unix/Linux Tutorial for Beginners

    17 - 19 October 2016

    Elixir node event
    Unix/Linux Tutorial for Beginners https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-b1fe99bb-880f-43eb-8d81-7366ba9a5d0c ELIXIR tutorial "Unix/Linux Tutorial for Beginners", Oct 17-19, 2016 2016-10-17 09:00:00 UTC 2016-10-19 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Train-the-Trainer course

    28 - 30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Train-the-Trainer course https://tess.elixir-europe.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Linux Command line course

    30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Linux Command line course https://tess.elixir-europe.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • RNA-seq data analysis using Chipster

    31 January 2017

    Elixir node event
    RNA-seq data analysis using Chipster https://tess.elixir-europe.org/events/rna-seq-data-analysis-using-chipster ELIXIR tutorial “RNA-seq data analysis using Chipster”, Jan 31, 2017 2017-01-31 09:00:00 UTC 2017-01-31 17:00:00 UTC IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI Transcriptomics Genomics IOCB PragueUniversity of Ljubljana, Faculty of Medicine [] Researchers workshops_and_courses registration_of_interest transcriptomics RNA-SeqeLearningEeLP
  • Unix/Linux Tutorial for Beginners 2

    27 - 29 March 2017

    Elixir node event
    Unix/Linux Tutorial for Beginners 2 https://tess.elixir-europe.org/events/unix-linux-tutorial-for-beginners-2 ELIXIR tutorial "Unix/Linux Tutorial for Beginners 2", Mar 27-29, 2017 2017-03-27 09:00:00 UTC 2017-03-29 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • ELIXIR-EXCELERATE HPC Train-the-Researcher course

    6 - 7 April 2017

    Málaga, Spain

    Elixir node event
    ELIXIR-EXCELERATE HPC Train-the-Researcher course https://tess.elixir-europe.org/events/elixir-excelerate-hpc-train-the-researcher-course-3af9b3c7-94a5-46ae-a68c-1c73b87049ab ELIXIR-EXCELERATE HPC Train-the-Researcher course, Apr 6-7, 2017, Malaga, Spain 2017-04-06 09:00:00 UTC 2017-04-07 17:00:00 UTC Escuela Técnica Superior de Ingeniería Informática Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur, Málaga, Spain Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur Málaga Málaga Spain Computational biology Computer science Escuela Técnica Superior de Ingeniería Informática, University of Malaga [] life scientistsResearchers workshops_and_courses registration_of_interest high-performance computingtrainingeLearningEeLP
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Think Tank Hackathon

    6 - 7 February 2018

    Ljubljana, Slovenia

    Elixir node event
    Think Tank Hackathon https://tess.elixir-europe.org/events/think-tank-hackathon CHARME Think Tank Hackathon, Feb 6-7, 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2018-02-06 09:00:00 UTC 2018-02-07 17:00:00 UTC CHARME, ELIXIR Slovenia, NIB University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Introductory Linux Tutorial for Life Sciences 3

    13 - 15 February 2018

    Elixir node event
    Introductory Linux Tutorial for Life Sciences 3 https://tess.elixir-europe.org/events/introductory-linux-tutorial-for-life-sciences-3 ELIXIR tutorial "Introductory Linux Tutorial for Life Sciences 3", Feb 13-15, 2018 2018-02-13 09:00:00 UTC 2018-02-15 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Beacon - 2018 AHM Workshop

    7 June 2018

    Berlin, Germany

    Elixir node event
    Beacon - 2018 AHM Workshop https://tess.elixir-europe.org/events/beacon-2018-ahm-workshop ELIXIR workshop "Beacon", Jun 7 2018 at the ELIXIR AHM 2018, Berlin, Germany 2018-06-07 09:00:00 UTC 2018-06-07 13:00:00 UTC ELIXIR Germany and Beacon community Hotel Berlin Berlin, 17, Lützowplatz, Berlin, Germany Hotel Berlin Berlin, 17, Lützowplatz Berlin Berlin Germany Genomics Hotel Berlin Berlin [] life scientistsResearchers 30 workshops_and_courses registration_of_interest genomicsdata managementeLearningEeLP
  • ELIXIR TtR course: Basic genomics using advanced analysis tools

    20 - 21 December 2018

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR TtR course: Basic genomics using advanced analysis tools https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si [] life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
  • ELIXIR Data Carpentry - Ljubljana

    29 - 30 January 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Data Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-data-carpentry-ljubljana **ELIXIR Data Carpentry for Genomics - Ljubljana** **29-30 Jan 2019, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia)** **ELIXIR Data Carpentry for Genomics** is a course intended for all those who would like to learn more about the basics of data processing and data management in the field of genomics. The course will be in English. **The limit of participants is 20.** If there are more applicants than available places, the participants will be selected based on their institutional and geographic background, while also taking into account the time of their registration. The course is free of charge. You can find more info about the course on the [**ELIXIR-SI eLearning Platform (EeLP)**](https://elixir.mf.uni-lj.si/course/view.php?id=44). The course will take place in the computer classroom at the **Institute of Biostatistics and Medical Informatics (IBMI)**, Faculty of Medicine, Vrazov trg 2, Ljubljana. Sessions will be intensive and hands-on, and taught by experienced data carpentry instructors. Instructors will be **Vasilis Lenis (University of Plymouth, UK)** and **Živa Ramšak (ELIXIR Slovenia; National Institute of Biology Ljubljana)**. The course is recommended for anyone who would like to learn more about how to process and manage big scale genomic data. **Program topics:** * Introduction - Presentation of ELIXIR Slovenia and ELIXIR-SI eLearning Platform * Project management in genomics and introduction to cloud computing * Introduction to Linux/Unix command line * Data wrangling and processing for genomics The course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR Hub** and **Data & Software Carpentry**. 2019-01-29 08:15:00 UTC 2019-01-30 12:30:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia Ljubljana Slovenia SI-1000 Genomics Data management Computer science University of Ljubljana, Faculty of Medicine ELIXIR EXCELERATE Life Science ResearchersPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearninggenomicsData carpentry
  • Workshop on High-Content Imaging and Data Science for Virtual Screening and Drug Discovery

    13 - 17 May 2019

    Bled, Slovenia

    Elixir node event
    Workshop on High-Content Imaging and Data Science for Virtual Screening and Drug Discovery https://tess.elixir-europe.org/events/workshop-on-high-content-imaging-and-data-science-for-virtual-screening-and-drug-discovery High-throughput phenotypic screening, based on high-content imaging, is increasingly often used as a tool for drug discovery. Compound screens are used to find hits that produce the desired phenotypes in relevant cellular assays. Genomic screens are used to elucidate the underlying molecular pathways and identify suitable drug targets. Since high-content screening produces a lot of data, data science approaches such as statistics, machine learning and neural networks can help interpret the collected data. Just as virtual screening can be performed in chemoinformatics (learning predictive models for QSAR - quantitative structure-activity relations) from data obtained through compound screens, similar approaches can be taken in the context of high-throughput phenotypic screening. This will be the first event of its kind in the region of Slovenia and Friuli-Venezia-Giulia. The event will bring together a group of experts covering different topics in the fields of high-content screening, image analysis, chemoinformatics and machine learning. This will allow graduate students and researchers from both academia and industry to familiarize themselves with these cutting-edge topics. The workshop will have an impact on both the academic and industrial sector in the region (e.g. biotech companies of all sizes). The workshop is part of the INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN (Big Data and Disease Models: A Cross- border Platform for Validated Biotech Industry Kits), which brings together experts on the topic from academia and industry. 2019-05-13 09:00:00 UTC 2019-05-17 18:00:00 UTC Jozef Stefan Institute, Ljubljana, Slovenia Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia, Bled, Slovenia Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia Bled Gorenjska Slovenia SI-4260 Drug discovery Genomics Rikli Balance Hotel elixir@mf.uni-lj.si European UnionINTERREG V-A Italy-Slovenia 2014-2020 project TRAIN PhD studentsGraduate studentsResearchersBusiness EntrepreneursBiotechnology CompaniesPharmaceutical Industry workshops_and_courses registration_of_interest INTERREGPhenotypic screeningData analysisVirtual ScreeningHigh-content imaging
  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-software-carpentry-ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data & Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](https://elixir.mf.uni-lj.si/course/view.php?id=46)**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • Genome assembly and annotation course 5

    1 - 5 July 2019

    Milan, Italy

    Elixir node event
    Genome assembly and annotation course 5 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-5 A **genome assembly and annotation course** will take place on **July 1-5, 2019** in **Milan, Italy**, hosted by the Italian ELIXIR Node in cooperation with other ELIXIR nodes that are involved in the ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and annotation experts in Europe will be teaching at the course. The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue with a step-by-step description of all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using Unix/Linux command line. After the course, the participants will have knowledge of commonly used assembly practices and tools. They will be able to run assembly and annotation projects on their own. **Prerequisites:** - **Working knowledge of Unix/Linux command line** - **As part of the course agenda, course participants will prepare a short presentation about their own projects.** Optionally, they may also bring their own data. **Instructions how to register for the course are available on the [ELIXIR-SI eLearning Platform (EELP)](https://elixir.mf.uni-lj.si/course/view.php?id=45).** You will be able to access the course after you register and your registration is approved by the course organizers. 2019-07-01 09:00:00 UTC 2019-07-05 17:00:00 UTC ELIXIR Italy University of Milano-Bicocca, Building U7, Lab 715, Milan, Italy University of Milano-Bicocca, Building U7, Lab 715 Milan Città Metropolitana di Milano Italy Genomics University of Milano-Bicocca, Italy General questions: gianluca.dellavedova@unimib.it Questions about the course agenda: henrik.lantz@nbis.se National Research Council of ItalyINRANBIS - National Bioinformatics Infrastructure SwedenELIXIR EXCELERATE life scientistsResearchersPhD students 24 workshops_and_courses registration_of_interest Genomics AssemblyTrainingeLearningEeLP
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